Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001100

Physical Location & Seq

Genomic Coordinates Reverse (-)

27277140 .. 27283840

Gene Structure 6701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0259600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGTTCTGGAGGGAACGTGAGAGGGAGAACAAAGATCAAAACGGTAGCGGACCGCCTTCTGGGCAGGTTCGAGTTCTTGTTGTTGGCGACTCAGGTGTTGGAAAAACTTCTCTTGTTCATTTGATTGTCAATGGTTCTTCCACTGCCCGCCCTCCTCAAACAGTAGGATGTTCAGTTGGTGTAAAGCATACTACTTATGGGAATTCTGGAAGCTCGTCAAGCAGCATTAAAGGTGACGCTGAGAGAGAATTCTTTATAGAACTCTGGGATATATGTGGACATGATAGATACAAAGAATGCCGGTCTCTTTTTTATTCCCAAATAAATGGTGTAATCTTTGTTCATGATCTCTCCCAAAGAAGGACAAAAACTGGCTTGCACAAGTGGGCAGCTGAGATATCTGCAACTGGGACATTTTCAGCTCCTCTAGGATCTGGAGGTCCTGGTGGTCTTCCTGTGCCGTATATTGTTATTGGTAACAAAGCTGATATTGCTGCAAAGGAGGGTACAAGGGGAAGCAGTGGCAATCTTGTTGACGTTGCCCGACAGTGGGTTGAGAAGCAAGGCTTGCTTCCATCAAGTGAGGAACTTCCACTGACGGAAAGTTTTCCTGGAGCTGGAGGCCTTATTGCGGCTGCCAAAGAAGCAAGATATGACAAGGAAGCTGTGATGAAATTCTTCCGAATGTTGATTAGGAGACGATATTTTTCTGATGATTTACCTGCACAAAGTCCATGGTCTATTTCTCCGGTTGAAAGTCCTGCTCAGACTGTAGATGAAAATTGGAGTGATGAGGATCATTCATACAGGAAGAAGAGCAGTTTACACGGCGATCCTTACAACTACAATATGCTCCCTCCTCTTCCAGCACAACGCAATCTGACACCACCTCCCACGCTTTATCCACAGCAGCCAGTTGCAGTTTCTGAAAATTACAGCATCCCTAGATTTGCGTATTCTAGTTACCCAGAAATCAGCAGTGCTGCCAGATCAAAGCGCTCAGATATCAATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L3

Protein Analysis

338

Amino Acids

37.04

Weight (kDa)

8.31

Isoelectric Point (pI)

53.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Roc	PF08477	24 - 137	6.3e-17	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	24 - 170	1e-15	Ras family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G61580
fragaria_vesca	FvH4_2g13300 FvH4_2g13300 FvH4_2g13300 FvH4_6g25400 FvH4_6g25400 FvH4_6g25400 FvH4_6g25400
malus_domestica	MD04G1044600.v1.1 MD08G1242000.v1.1 MD15G1435700.v1.1
prunus_persica	Prupe.1G579300_v2.0.a1 Prupe.1G579300_v2.0.a1 Prupe.8G036200_v2.0.a1 Prupe.8G036200_v2.0.a1
pyrus_communis	pycom15g38440
rosa_chinensis	RchiOBHm_Chr2g0125851 RchiOBHm_Chr6g0274741 RchiOBHm_Chr7g0220671
rosa_laevigata	RLG00000002211
rosa_multiflora	Rmu_co8485815.1_g000001 Rmu_sc0006216.1_g000001 Rmu_sc0006223.1_g000009 Rmu_sc0013532.1_g000002 Rmu_ssc0000189.1_g000006
rosa_roxburghii	Rroxscaffold_2G00117610 Rroxscaffold_2G00117670 Rroxscaffold_3G00239250 Rroxscaffold_7G00193980
rosa_rugosa	Rorug02G0259500 Rorug02G0259600 Rorug02G0259700 Rorug02G0259800 Rorug02G0259900 Rorug06G0083600 Rorug07G0195800 Rorug07G0195900 Rorug07G0196000.1 Rorug07G0196100
rosa_samantha	Rh2CG307400 Rh6AG199400 Rh6BG203200 Rh6CG203400 Rh7AG336800 Rh7BG327700 Rh7CG354800 Rh7DG333400
rosa_wichuraiana	Rw2G025710 Rw6G017340 Rw7G028730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	55, 730
AciI	CCGC	4 cut(s)	48, 53, 148, 632
AclWI	GGATC	3 cut(s)	439, 804, 827
AcsI	RAATTY	3 cut(s)	202, 248, 674
AfaI	GTAC	1 cut(s)	508
AfeI	AGCGCT	1 cut(s)	998
AfiI	CCNNNNNNNGG	6 cut(s)	59, 360, 549, 550, 617, 631
AgsI	TTSAA	1 cut(s)	755
AjnI	CCWGG	2 cut(s)	442, 610
AluBI	AGCT	6 cut(s)	213, 392, 422, 485, 617, 665
AluI	AGCT	6 cut(s)	213, 392, 422, 485, 617, 665
Alw26I	GTCTC	2 cut(s)	309, 691
AlwI	GGATC	3 cut(s)	439, 804, 827
AlwNI	CAGNNNCTG	1 cut(s)	926
Aor51HI	AGCGCT	1 cut(s)	998
AoxI	GGCC	1 cut(s)	622
ApeKI	GCWGC	6 cut(s)	222, 389, 494, 635, 910, 983
ApoI	RAATTY	3 cut(s)	202, 248, 674
Asp700I	GAANNNNTTC	3 cut(s)	106, 606, 677
AspLEI	GCGC	1 cut(s)	999
AspS9I	GGNCC	2 cut(s)	50, 440
AsuHPI	GGTGA	1 cut(s)	245
AvaII	GGWCC	2 cut(s)	50, 440
BbsI	GAAGAC	1 cut(s)	443
BbvI	GCAGC	6 cut(s)	234, 401, 481, 622, 922, 970
BccI	CCATC	1 cut(s)	583
BceAI	ACGGC	2 cut(s)	445, 844
BciT130I	CCWGG	2 cut(s)	444, 612
BcoDI	GTCTC	2 cut(s)	309, 691
BfaI	CTAG	3 cut(s)	428, 945, 960
BfmI	CTRYAG	1 cut(s)	771
BfoI	RGCGCY	1 cut(s)	1000
BfuAI	ACCTGC	2 cut(s)	55, 730
BglI	GCCNNNNNGGC	1 cut(s)	61
BisI	GCNGC	7 cut(s)	223, 390, 495, 633, 636, 911, 984
BlsI	GCNGC	7 cut(s)	224, 391, 496, 634, 637, 912, 985
Bme1390I	CCNGG	2 cut(s)	444, 612
Bme18I	GGWCC	2 cut(s)	50, 440
BmgT120I	GGNCC	2 cut(s)	50, 440
BmrFI	CCNGG	2 cut(s)	444, 612
BmrI	ACTGGG	1 cut(s)	417
BmsI	GCATC	1 cut(s)	948
BmuI	ACTGGG	1 cut(s)	417
BpiI	GAAGAC	1 cut(s)	443
BpmI	CTGGAG	4 cut(s)	28, 456, 633, 639
BsaBI	GATNNNNATC	1 cut(s)	795
BsaI	GGTCTC	1 cut(s)	309
BsaJI	CCNNGG	1 cut(s)	734
BsaWI	WCCGGW	1 cut(s)	748
BsaXI	ACNNNNNCTCC	3 cut(s)	31, 874, 904
Bsc4I	CCNNNNNNNGG	6 cut(s)	59, 360, 549, 550, 617, 631
Bse118I	RCCGGY	1 cut(s)	300
Bse1I	ACTGG	3 cut(s)	376, 412, 914
Bse8I	GATNNNNATC	1 cut(s)	795
BseBI	CCWGG	2 cut(s)	444, 612
BseDI	CCNNGG	1 cut(s)	734
BseGI	GGATG	2 cut(s)	173, 939
BseJI	GATNNNNATC	1 cut(s)	795
BseLI	CCNNNNNNNGG	6 cut(s)	59, 360, 549, 550, 617, 631
BseMII	CTCAG	5 cut(s)	105, 231, 384, 779, 1014
BseNI	ACTGG	3 cut(s)	376, 412, 914
BseRI	GAGGAG	3 cut(s)	144, 414, 849
BseXI	GCAGC	6 cut(s)	234, 401, 481, 622, 922, 970
BsgI	GTGCAG	1 cut(s)	708
BshFI	GGCC	1 cut(s)	624
BsiSI	CCGG	2 cut(s)	301, 749
BslFI	GGGAC	1 cut(s)	424
BslI	CCNNNNNNNGG	6 cut(s)	59, 360, 549, 550, 617, 631
BsmAI	GTCTC	2 cut(s)	309, 691
BsmBI	CGTCTC	1 cut(s)	691
BsmFI	GGGAC	1 cut(s)	424
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	624
Bso31I	GGTCTC	1 cut(s)	309
Bsp143I	GATC	6 cut(s)	34, 346, 431, 796, 832, 989
Bsp19I	CCATGG	1 cut(s)	734
BspACI	CCGC	4 cut(s)	48, 53, 148, 632
BspANI	GGCC	1 cut(s)	624
BspCNI	CTCAG	5 cut(s)	104, 232, 385, 778, 1013
BspHI	TCATGA	1 cut(s)	343
BspMI	ACCTGC	2 cut(s)	55, 730
BspPI	GGATC	3 cut(s)	439, 804, 827
BspQI	GCTCTTC	1 cut(s)	809
BspTNI	GGTCTC	1 cut(s)	309
BsrFI	RCCGGY	1 cut(s)	300
BsrI	ACTGG	3 cut(s)	376, 412, 914
BssAI	RCCGGY	1 cut(s)	300
BssECI	CCNNGG	1 cut(s)	734
BssMI	GATC	6 cut(s)	34, 346, 431, 796, 832, 989
BssT1I	CCWWGG	1 cut(s)	734
Bst2UI	CCWGG	2 cut(s)	444, 612
Bst4CI	ACNGT	4 cut(s)	44, 163, 549, 772
Bst6I	CTCTTC	2 cut(s)	809, 867
BstAPI	GCANNNNNTGC	1 cut(s)	568
BstC8I	GCNNGC	3 cut(s)	148, 377, 569
BstDEI	CTNAG	5 cut(s)	91, 240, 393, 765, 1000
BstDSI	CCRYGG	1 cut(s)	734
BstF5I	GGATG	2 cut(s)	173, 939
BstH2I	RGCGCY	1 cut(s)	1000
BstHHI	GCGC	1 cut(s)	999
BstKTI	GATC	6 cut(s)	37, 349, 434, 799, 835, 992
BstMAI	GTCTC	2 cut(s)	309, 691
BstMBI	GATC	6 cut(s)	34, 346, 431, 796, 832, 989
BstMWI	GCNNNNNNNGC	5 cut(s)	61, 219, 491, 568, 644
BstNI	CCWGG	2 cut(s)	444, 612
BstSCI	CCNGG	2 cut(s)	442, 610
BstSFI	CTRYAG	1 cut(s)	771
BstV1I	GCAGC	6 cut(s)	234, 401, 481, 622, 922, 970
BstV2I	GAAGAC	1 cut(s)	443
BstX2I	RGATCY	1 cut(s)	431
BstXI	CCANNNNNNTGG	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	431
BsuRI	GGCC	1 cut(s)	624
BtgI	CCRYGG	1 cut(s)	734
BtsCI	GGATG	2 cut(s)	173, 939
BtsI	GCAGTG	3 cut(s)	141, 526, 985
BtsIMutI	CAGTG	5 cut(s)	141, 526, 554, 593, 985
BveI	ACCTGC	2 cut(s)	55, 730
Cac8I	GCNNGC	3 cut(s)	148, 377, 569
CaiI	CAGNNNCTG	1 cut(s)	926
CciI	TCATGA	1 cut(s)	343
CfoI	GCGC	1 cut(s)	999
Cfr10I	RCCGGY	1 cut(s)	300
Cfr13I	GGNCC	2 cut(s)	50, 440
CpoI	CGGWCCG	1 cut(s)	50
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	507
CspI	CGGWCCG	1 cut(s)	50
CviAII	CATG	3 cut(s)	281, 344, 735
CviQI	GTAC	1 cut(s)	507
DdeI	CTNAG	5 cut(s)	91, 240, 393, 765, 1000
DpnI	GATC	6 cut(s)	36, 348, 433, 798, 834, 991
DpnII	GATC	6 cut(s)	34, 346, 431, 796, 832, 989
Eam1104I	CTCTTC	2 cut(s)	809, 867
EarI	CTCTTC	2 cut(s)	809, 867
Eco130I	CCWWGG	1 cut(s)	734
Eco147I	AGGCCT	1 cut(s)	624
Eco31I	GGTCTC	1 cut(s)	309
Eco32I	GATATC	2 cut(s)	399, 1006
Eco47I	GGWCC	2 cut(s)	50, 440
Eco47III	AGCGCT	1 cut(s)	998
EcoO109I	RGGNCCY	1 cut(s)	440
EcoRI	GAATTC	2 cut(s)	202, 248
EcoRII	CCWGG	2 cut(s)	442, 610
EcoRV	GATATC	2 cut(s)	399, 1006
EcoT14I	CCWWGG	1 cut(s)	734
ErhI	CCWWGG	1 cut(s)	734
Esp3I	CGTCTC	1 cut(s)	691
FaeI	CATG	3 cut(s)	284, 347, 738
FalI	AAGNNNNNCTT	4 cut(s)	551, 583, 555, 587
FaqI	GGGAC	1 cut(s)	424
FatI	CATG	3 cut(s)	280, 343, 734
FauI	CCCGC	1 cut(s)	155
Fnu4HI	GCNGC	7 cut(s)	223, 390, 495, 633, 636, 911, 984
FokI	GGATG	2 cut(s)	180, 926
Fsp4HI	GCNGC	7 cut(s)	223, 390, 495, 633, 636, 911, 984
FspBI	CTAG	3 cut(s)	428, 945, 960
GlaI	GCGC	1 cut(s)	998
GluI	GCNGC	7 cut(s)	223, 390, 495, 633, 636, 911, 984
GsuI	CTGGAG	4 cut(s)	28, 456, 633, 639
HaeII	RGCGCY	1 cut(s)	1000
HaeIII	GGCC	1 cut(s)	624
HapII	CCGG	2 cut(s)	301, 749
HgaI	GACGC	1 cut(s)	245
HhaI	GCGC	1 cut(s)	999
Hin1II	CATG	3 cut(s)	284, 347, 738
Hin6I	GCGC	1 cut(s)	997
HinP1I	GCGC	1 cut(s)	997
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	2 cut(s)	301, 749
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	3 cut(s)	278, 535, 824
Hpy188I	TCNGA	6 cut(s)	683, 712, 768, 882, 928, 1003
Hpy188III	TCNNGA	4 cut(s)	7, 207, 344, 435
Hpy8I	GTNNAC	3 cut(s)	278, 535, 824
HpyAV	CCTTC	2 cut(s)	66, 354
HpyCH4III	ACNGT	4 cut(s)	44, 163, 549, 772
HpyCH4IV	ACGT	2 cut(s)	16, 537
HpyCH4V	TGCA	5 cut(s)	379, 404, 497, 725, 920
HpyF10VI	GCNNNNNNNGC	5 cut(s)	61, 219, 491, 568, 644
HpyF3I	CTNAG	5 cut(s)	91, 240, 393, 765, 1000
HpySE526I	ACGT	2 cut(s)	16, 537
Hsp92II	CATG	3 cut(s)	284, 347, 738
HspAI	GCGC	1 cut(s)	997
Kzo9I	GATC	6 cut(s)	34, 346, 431, 796, 832, 989
LguI	GCTCTTC	1 cut(s)	809
LmnI	GCTCC	3 cut(s)	427, 614, 858
Lsp1109I	GCAGC	6 cut(s)	234, 401, 481, 622, 922, 970
LweI	GCATC	1 cut(s)	948
MaeI	CTAG	3 cut(s)	428, 945, 960
MaeII	ACGT	2 cut(s)	16, 537
MaeIII	GTNAC	3 cut(s)	233, 476, 962
MalI	GATC	6 cut(s)	36, 348, 433, 798, 834, 991
MboI	GATC	6 cut(s)	34, 346, 431, 796, 832, 989
MboII	GAAGA	6 cut(s)	129, 443, 670, 823, 826, 854
MflI	RGATCY	1 cut(s)	431
MluCI	AATT	5 cut(s)	202, 248, 674, 781, 931
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	79
MroXI	GAANNNNTTC	3 cut(s)	106, 606, 677
MseI	TTAA	1 cut(s)	228
MspA1I	CMGCKG	1 cut(s)	392
MspI	CCGG	2 cut(s)	301, 749
MspR9I	CCNGG	2 cut(s)	444, 612
Mva1269I	GAATGC	1 cut(s)	302
MvaI	CCWGG	2 cut(s)	444, 612
MwoI	GCNNNNNNNGC	5 cut(s)	61, 219, 491, 568, 644
NcoI	CCATGG	1 cut(s)	734
NdeII	GATC	6 cut(s)	34, 346, 431, 796, 832, 989
NlaIII	CATG	3 cut(s)	284, 347, 738
NmuCI	GTSAC	1 cut(s)	233
PagI	TCATGA	1 cut(s)	343
PceI	AGGCCT	1 cut(s)	624
PciSI	GCTCTTC	1 cut(s)	809
PctI	GAATGC	1 cut(s)	302
PdmI	GAANNNNTTC	3 cut(s)	106, 606, 677
PfoI	TCCNGGA	1 cut(s)	610
PkrI	GCNGC	7 cut(s)	224, 391, 496, 634, 637, 912, 985
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
PpuMI	RGGWCCY	1 cut(s)	440
Psp5II	RGGWCCY	1 cut(s)	440
Psp6I	CCWGG	2 cut(s)	442, 610
PspGI	CCWGG	2 cut(s)	442, 610
PspPI	GGNCC	2 cut(s)	50, 440
PspPPI	RGGWCCY	1 cut(s)	440
PsrI	GAACNNNNNNTAC	2 cut(s)	324, 356
PstNI	CAGNNNCTG	1 cut(s)	926
PsuI	RGATCY	1 cut(s)	431
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	1 cut(s)	508
RsaNI	GTAC	1 cut(s)	507
Rsr2I	CGGWCCG	1 cut(s)	50
RsrII	CGGWCCG	1 cut(s)	50
SapI	GCTCTTC	1 cut(s)	809
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	7 cut(s)	223, 390, 495, 633, 636, 911, 984
Sau3AI	GATC	6 cut(s)	34, 346, 431, 796, 832, 989
Sau96I	GGNCC	2 cut(s)	50, 440
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	2 cut(s)	444, 612
SfaNI	GCATC	1 cut(s)	948
SfcI	CTRYAG	1 cut(s)	771
SinI	GGWCC	2 cut(s)	50, 440
Sse9I	AATT	5 cut(s)	202, 248, 674, 781, 931
SseBI	AGGCCT	1 cut(s)	624
SsiI	CCGC	4 cut(s)	48, 53, 148, 632
SspMI	CTAG	3 cut(s)	428, 945, 960
StuI	AGGCCT	1 cut(s)	624
StyD4I	CCNGG	2 cut(s)	442, 610
StyI	CCWWGG	1 cut(s)	734
TaaI	ACNGT	4 cut(s)	44, 163, 549, 772
TaiI	ACGT	2 cut(s)	19, 540
TaqI	TCGA	1 cut(s)	70
TasI	AATT	5 cut(s)	202, 248, 674, 781, 931
TauI	GCSGC	1 cut(s)	635
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	5 cut(s)	148, 526, 554, 600, 985
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	6 cut(s)	222, 389, 494, 635, 910, 983
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	5 cut(s)	107, 332, 686, 792, 792
TspGWI	ACGGA	1 cut(s)	614
TspRI	CASTG	5 cut(s)	148, 526, 554, 600, 985
VpaK11BI	GGWCC	2 cut(s)	50, 440
XapI	RAATTY	3 cut(s)	202, 248, 674
XmnI	GAANNNNTTC	3 cut(s)	106, 606, 677
XspI	CTAG	3 cut(s)	428, 945, 960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.