Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001100

Physical Location & Seq

Genomic Coordinates Reverse (-)

11104616 .. 11106310

Gene Structure 1695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0083600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGATCAAGTTGGAGCAGTACGCACCTACTCTCTTTGTCATTATTATTGGAATTCAATATATAAGTAGTAGCTCACTCCACTTCATTTCTCACTACCCCAACCTTATAGCGGTCGGCTACTTTTTAAGTTATCAACCTCCTTTATATATTAGCATGGAGTACTTTCGCCTCGTTTCCGTCTGCGCTTTTCTCTATGTCGCATTAGCACTGTTGGGAAGAAGCTATGCCTCTAATGATGTATCATGGGGTTCTTACTGGCAGTCAGCTTTCCCAAAAACTGCGATACCCAAAACCCTACAAGAACTTCTACATCCGGACAACTGGATCGAAGGGAAAAGTAGATACACTGGGTTCAGCAAGGACGATCTAAACATCAACACCTTGCTAGTTTCCGGATCTGCATTTCCAACTATTGGTAAAGATAGCTATGCCGAGGCCGCCTCCGGAAAAATCCAAGTCGAGCCAGATGTGACTACTTTCTTTTTAGAAAAGGATCTGCGACTGGGGAAGAAGATGACCCTGCACTTCCCCAAAACCACAGTTGCCGCCGAGATCTTGCCTCGTAAAGTCGCCAAGTCCATACCCTTTTCGACGAACAAGCTGCCGCAGATTCTCAACCACTTTGCGGTGAAACCCAACTCCGTGGAAGCAGAAGTGATCAAACAGACGATCGAAGACTGCGAGGCTCCAAGCATCAAAGGGGAAGACAAGTACTGCGCCACGTCGTTGGAATCCTTGGTCGATTTTACCGTTTCGAAGCTCGGTAAATACGTGCAGGTGCATTCCACAGAGGTCGAAAACGAAAACAAACAGGAATATAAGATTGGAAAGGGAGCTGTGCAGCGAATTGGAGACAGGTCAGTGGTTTGTCACAAGCAGAAGTACGTGTATGCGGTTTTTTACTGCCATGAAATTCACTCAACTAGGGCTTACGTGGTTCCTTTGGTGGGTGCTGATGGAACTAAAGCTGAAGCAGTAGCTGTTTGCCACACTGATACAAGAACATGGAACAACAAGCATTTTGCTTTCCAGGCCCTCAAAATAAAGCCGGGAACACTTCCTATTTGTCACTTCTTGCCTAGTGGAAACCTTGTGTGGGTTCCAAACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L3

Protein Analysis

370

Amino Acids

41.43

Weight (kDa)

8.74

Isoelectric Point (pI)

36.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BURP	PF03181	160 - 368	1.5e-84	BURP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G61580
fragaria_vesca	FvH4_2g13300 FvH4_2g13300 FvH4_2g13300 FvH4_6g25400 FvH4_6g25400 FvH4_6g25400 FvH4_6g25400
malus_domestica	MD04G1044600.v1.1 MD08G1242000.v1.1 MD15G1435700.v1.1
prunus_persica	Prupe.1G579300_v2.0.a1 Prupe.1G579300_v2.0.a1 Prupe.8G036200_v2.0.a1 Prupe.8G036200_v2.0.a1
pyrus_communis	pycom15g38440
rosa_chinensis	RchiOBHm_Chr2g0125851 RchiOBHm_Chr6g0274741 RchiOBHm_Chr7g0220671
rosa_laevigata	RLG00000002211
rosa_multiflora	Rmu_co8485815.1_g000001 Rmu_sc0006216.1_g000001 Rmu_sc0006223.1_g000009 Rmu_sc0013532.1_g000002 Rmu_ssc0000189.1_g000006
rosa_roxburghii	Rroxscaffold_2G00117610 Rroxscaffold_2G00117670 Rroxscaffold_3G00239250 Rroxscaffold_7G00193980
rosa_rugosa	Rorug02G0259500 Rorug02G0259600 Rorug02G0259700 Rorug02G0259800 Rorug02G0259900 Rorug06G0083600 Rorug07G0195800 Rorug07G0195900 Rorug07G0196000.1 Rorug07G0196100
rosa_samantha	Rh2CG307400 Rh6AG199400 Rh6BG203200 Rh6CG203400 Rh7AG336800 Rh7BG327700 Rh7CG354800 Rh7DG333400
rosa_wichuraiana	Rw2G025710 Rw6G017340 Rw7G028730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	766
Acc36I	ACCTGC	1 cut(s)	766
AccB7I	CCANNNNNTGG	1 cut(s)	413
AccIII	TCCGGA	3 cut(s)	313, 392, 443
AciI	CCGC	6 cut(s)	110, 438, 546, 605, 626, 893
AclWI	GGATC	3 cut(s)	332, 403, 501
AcsI	RAATTY	2 cut(s)	51, 912
AcuI	CTGAAG	1 cut(s)	990
AfaI	GTAC	4 cut(s)	20, 161, 713, 884
AfiI	CCNNNNNNNGG	5 cut(s)	109, 413, 625, 947, 1096
AflIII	ACRYGT	1 cut(s)	885
AgsI	TTSAA	1 cut(s)	56
AjiI	CACGTC	1 cut(s)	723
AjnI	CCWGG	1 cut(s)	1029
AjuI	GAANNNNNNNTTGG	2 cut(s)	807, 839
AluBI	AGCT	9 cut(s)	72, 222, 266, 426, 601, 760, 836, 968, 980
AluI	AGCT	9 cut(s)	72, 222, 266, 426, 601, 760, 836, 968, 980
Alw26I	GTCTC	1 cut(s)	846
AlwI	GGATC	3 cut(s)	332, 403, 501
AlwNI	CAGNNNCTG	1 cut(s)	980
Aor13HI	TCCGGA	3 cut(s)	313, 392, 443
AoxI	GGCC	2 cut(s)	435, 1032
ApeKI	GCWGC	2 cut(s)	601, 841
ApoI	RAATTY	2 cut(s)	51, 912
AspLEI	GCGC	2 cut(s)	185, 719
AspS9I	GGNCC	1 cut(s)	1033
AsuC2I	CCSGG	1 cut(s)	1050
AsuHPI	GGTGA	1 cut(s)	640
AsuII	TTCGAA	1 cut(s)	755
BbsI	GAAGAC	2 cut(s)	681, 711
BbvI	GCAGC	2 cut(s)	588, 853
BccI	CCATC	1 cut(s)	950
BcgI	CGANNNNNNTGC	2 cut(s)	583, 617
BciT130I	CCWGG	1 cut(s)	1031
BclI	TGATCA	2 cut(s)	3, 657
BcnI	CCSGG	1 cut(s)	1050
BcoDI	GTCTC	1 cut(s)	846
BfaI	CTAG	3 cut(s)	386, 924, 1080
BfuAI	ACCTGC	1 cut(s)	766
BglII	AGATCT	1 cut(s)	552
BisI	GCNGC	5 cut(s)	438, 546, 602, 605, 842
BlsI	GCNGC	5 cut(s)	439, 547, 603, 606, 843
BmcAI	AGTACT	2 cut(s)	161, 713
Bme1390I	CCNGG	2 cut(s)	1031, 1050
BmgBI	CACGTC	1 cut(s)	723
BmgT120I	GGNCC	1 cut(s)	1033
BmiI	GGNNCC	3 cut(s)	687, 939, 1101
BmrFI	CCNGG	2 cut(s)	1031, 1050
BmrI	ACTGGG	2 cut(s)	357, 512
BmsI	GCATC	1 cut(s)	702
BmuI	ACTGGG	2 cut(s)	357, 512
BpiI	GAAGAC	2 cut(s)	681, 711
BplI	GAGNNNNNCTC	2 cut(s)	425, 457
Bpu14I	TTCGAA	1 cut(s)	755
BpuMI	CCSGG	1 cut(s)	1050
BsaAI	YACGTR	3 cut(s)	772, 886, 934
BsaJI	CCNNGG	3 cut(s)	432, 642, 735
BsaWI	WCCGGW	3 cut(s)	313, 392, 443
Bsc4I	CCNNNNNNNGG	5 cut(s)	109, 413, 625, 947, 1096
Bse1I	ACTGG	4 cut(s)	260, 326, 352, 507
BseAI	TCCGGA	3 cut(s)	313, 392, 443
BseBI	CCWGG	1 cut(s)	1031
BseDI	CCNNGG	3 cut(s)	432, 642, 735
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	5 cut(s)	109, 413, 625, 947, 1096
BseNI	ACTGG	4 cut(s)	260, 326, 352, 507
BseXI	GCAGC	2 cut(s)	588, 853
BsgI	GTGCAG	3 cut(s)	506, 794, 860
Bsh1285I	CGRYCG	2 cut(s)	114, 672
BshFI	GGCC	2 cut(s)	437, 1034
BsiEI	CGRYCG	2 cut(s)	114, 672
BsiSI	CCGG	4 cut(s)	314, 393, 444, 1049
BslI	CCNNNNNNNGG	5 cut(s)	109, 413, 625, 947, 1096
BsmAI	GTCTC	1 cut(s)	846
BsmI	GAATGC	1 cut(s)	781
BsnI	GGCC	2 cut(s)	437, 1034
Bsp119I	TTCGAA	1 cut(s)	755
Bsp13I	TCCGGA	3 cut(s)	313, 392, 443
Bsp143I	GATC	8 cut(s)	3, 324, 364, 395, 493, 552, 657, 669
BspACI	CCGC	6 cut(s)	110, 438, 546, 605, 626, 893
BspANI	GGCC	2 cut(s)	437, 1034
BspEI	TCCGGA	3 cut(s)	313, 392, 443
BspLI	GGNNCC	3 cut(s)	687, 939, 1101
BspMI	ACCTGC	1 cut(s)	766
BspPI	GGATC	3 cut(s)	332, 403, 501
BspT104I	TTCGAA	1 cut(s)	755
BsrI	ACTGG	4 cut(s)	260, 326, 352, 507
BssECI	CCNNGG	3 cut(s)	432, 642, 735
BssMI	GATC	8 cut(s)	3, 324, 364, 395, 493, 552, 657, 669
BssT1I	CCWWGG	1 cut(s)	735
Bst2UI	CCWGG	1 cut(s)	1031
Bst4CI	ACNGT	3 cut(s)	210, 541, 751
BstBAI	YACGTR	3 cut(s)	772, 886, 934
BstBI	TTCGAA	1 cut(s)	755
BstDSI	CCRYGG	1 cut(s)	642
BstF5I	GGATG	1 cut(s)	310
BstHHI	GCGC	2 cut(s)	185, 719
BstKTI	GATC	8 cut(s)	6, 327, 367, 398, 496, 555, 660, 672
BstMAI	GTCTC	1 cut(s)	846
BstMBI	GATC	8 cut(s)	3, 324, 364, 395, 493, 552, 657, 669
BstMCI	CGRYCG	2 cut(s)	114, 672
BstMWI	GCNNNNNNNGC	2 cut(s)	437, 1031
BstNI	CCWGG	1 cut(s)	1031
BstSCI	CCNGG	2 cut(s)	1029, 1048
BstV1I	GCAGC	2 cut(s)	588, 853
BstV2I	GAAGAC	2 cut(s)	681, 711
BstX2I	RGATCY	3 cut(s)	395, 493, 552
BstXI	CCANNNNNNTGG	2 cut(s)	643, 727
BstYI	RGATCY	3 cut(s)	395, 493, 552
BsuRI	GGCC	2 cut(s)	437, 1034
BtgI	CCRYGG	1 cut(s)	642
BtrI	CACGTC	1 cut(s)	723
BtsCI	GGATG	1 cut(s)	310
BtsIMutI	CAGTG	4 cut(s)	206, 345, 867, 990
BveI	ACCTGC	1 cut(s)	766
CaiI	CAGNNNCTG	1 cut(s)	980
CfoI	GCGC	2 cut(s)	185, 719
Cfr13I	GGNCC	1 cut(s)	1033
Csp6I	GTAC	4 cut(s)	19, 160, 712, 883
CviAII	CATG	4 cut(s)	154, 243, 908, 1005
CviQI	GTAC	4 cut(s)	19, 160, 712, 883
DpnI	GATC	8 cut(s)	5, 326, 366, 397, 495, 554, 659, 671
DpnII	GATC	8 cut(s)	3, 324, 364, 395, 493, 552, 657, 669
Eco130I	CCWWGG	1 cut(s)	735
Eco57I	CTGAAG	1 cut(s)	990
EcoO109I	RGGNCCY	1 cut(s)	1033
EcoRI	GAATTC	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	1029
EcoT14I	CCWWGG	1 cut(s)	735
ErhI	CCWWGG	1 cut(s)	735
FaeI	CATG	4 cut(s)	157, 246, 911, 1008
FatI	CATG	4 cut(s)	153, 242, 907, 1004
FbaI	TGATCA	2 cut(s)	3, 657
Fnu4HI	GCNGC	5 cut(s)	438, 546, 602, 605, 842
FokI	GGATG	1 cut(s)	297
Fsp4HI	GCNGC	5 cut(s)	438, 546, 602, 605, 842
FspBI	CTAG	3 cut(s)	386, 924, 1080
GlaI	GCGC	2 cut(s)	184, 718
GluI	GCNGC	5 cut(s)	438, 546, 602, 605, 842
HaeIII	GGCC	2 cut(s)	437, 1034
HapII	CCGG	4 cut(s)	314, 393, 444, 1049
HhaI	GCGC	2 cut(s)	185, 719
Hin1II	CATG	4 cut(s)	157, 246, 911, 1008
Hin6I	GCGC	2 cut(s)	183, 717
HinP1I	GCGC	2 cut(s)	183, 717
HinfI	GANTC	2 cut(s)	610, 731
HpaII	CCGG	4 cut(s)	314, 393, 444, 1049
HphI	GGTGA	1 cut(s)	640
Hpy188III	TCNNGA	3 cut(s)	314, 393, 444
Hpy99I	CGWCG	2 cut(s)	595, 727
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	3 cut(s)	210, 541, 751
HpyCH4IV	ACGT	4 cut(s)	722, 771, 885, 933
HpyCH4V	TGCA	5 cut(s)	401, 523, 775, 781, 841
HpyF10VI	GCNNNNNNNGC	2 cut(s)	437, 1031
HpySE526I	ACGT	4 cut(s)	722, 771, 885, 933
Hsp92II	CATG	4 cut(s)	157, 246, 911, 1008
HspAI	GCGC	2 cut(s)	183, 717
Kpn2I	TCCGGA	3 cut(s)	313, 392, 443
Ksp22I	TGATCA	2 cut(s)	3, 657
Kzo9I	GATC	8 cut(s)	3, 324, 364, 395, 493, 552, 657, 669
LmnI	GCTCC	3 cut(s)	13, 691, 833
Lsp1109I	GCAGC	2 cut(s)	588, 853
LweI	GCATC	1 cut(s)	702
MaeI	CTAG	3 cut(s)	386, 924, 1080
MaeII	ACGT	4 cut(s)	722, 771, 885, 933
MaeIII	GTNAC	3 cut(s)	469, 869, 1067
MalI	GATC	8 cut(s)	5, 326, 366, 397, 495, 554, 659, 671
MboI	GATC	8 cut(s)	3, 324, 364, 395, 493, 552, 657, 669
MboII	GAAGA	5 cut(s)	228, 520, 523, 686, 716
MflI	RGATCY	3 cut(s)	395, 493, 552
MluCI	AATT	3 cut(s)	51, 846, 912
MmeI	TCCRAC	2 cut(s)	431, 708
MnlI	CCTC	9 cut(s)	147, 179, 238, 427, 451, 570, 676, 784, 1046
MroI	TCCGGA	3 cut(s)	313, 392, 443
MseI	TTAA	1 cut(s)	125
MspI	CCGG	4 cut(s)	314, 393, 444, 1049
MspR9I	CCNGG	2 cut(s)	1031, 1050
Mva1269I	GAATGC	1 cut(s)	781
MvaI	CCWGG	1 cut(s)	1031
MwoI	GCNNNNNNNGC	2 cut(s)	437, 1031
NciI	CCSGG	1 cut(s)	1050
NdeII	GATC	8 cut(s)	3, 324, 364, 395, 493, 552, 657, 669
NlaIII	CATG	4 cut(s)	157, 246, 911, 1008
NlaIV	GGNNCC	3 cut(s)	687, 939, 1101
NmeAIII	GCCGAG	2 cut(s)	457, 574
NmuCI	GTSAC	3 cut(s)	469, 869, 1067
NspV	TTCGAA	1 cut(s)	755
PaqCI	CACCTGC	1 cut(s)	766
PcsI	WCGNNNNNNNCGW	3 cut(s)	678, 747, 768
PctI	GAATGC	1 cut(s)	781
PfeI	GAWTC	2 cut(s)	610, 731
PflMI	CCANNNNNTGG	1 cut(s)	413
PkrI	GCNGC	5 cut(s)	439, 547, 603, 606, 843
Ple19I	CGATCG	1 cut(s)	672
Ppu21I	YACGTR	3 cut(s)	772, 886, 934
Psp6I	CCWGG	1 cut(s)	1029
PspGI	CCWGG	1 cut(s)	1029
PspN4I	GGNNCC	3 cut(s)	687, 939, 1101
PspPI	GGNCC	1 cut(s)	1033
PstNI	CAGNNNCTG	1 cut(s)	980
PsuI	RGATCY	3 cut(s)	395, 493, 552
PvuI	CGATCG	1 cut(s)	672
RsaI	GTAC	4 cut(s)	20, 161, 713, 884
RsaNI	GTAC	4 cut(s)	19, 160, 712, 883
SaqAI	TTAA	1 cut(s)	125
SatI	GCNGC	5 cut(s)	438, 546, 602, 605, 842
Sau3AI	GATC	8 cut(s)	3, 324, 364, 395, 493, 552, 657, 669
Sau96I	GGNCC	1 cut(s)	1033
ScaI	AGTACT	2 cut(s)	161, 713
ScrFI	CCNGG	2 cut(s)	1031, 1050
SfaNI	GCATC	1 cut(s)	702
SfuI	TTCGAA	1 cut(s)	755
Sse9I	AATT	3 cut(s)	51, 846, 912
SsiI	CCGC	6 cut(s)	110, 438, 546, 605, 626, 893
SspMI	CTAG	3 cut(s)	386, 924, 1080
StyD4I	CCNGG	2 cut(s)	1029, 1048
StyI	CCWWGG	1 cut(s)	735
TaaI	ACNGT	3 cut(s)	210, 541, 751
TaiI	ACGT	4 cut(s)	725, 774, 888, 936
TaqI	TCGA	7 cut(s)	327, 459, 590, 672, 741, 755, 795
TasI	AATT	3 cut(s)	51, 846, 912
TatI	WGTACW	2 cut(s)	159, 711
TauI	GCSGC	3 cut(s)	440, 548, 607
TfiI	GAWTC	2 cut(s)	610, 731
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TscAI	CASTG	4 cut(s)	213, 352, 867, 997
TseFI	GTSAC	3 cut(s)	469, 869, 1067
TseI	GCWGC	2 cut(s)	601, 841
Tsp45I	GTSAC	3 cut(s)	469, 869, 1067
TspDTI	ATGAA	2 cut(s)	73, 924
TspGWI	ACGGA	2 cut(s)	166, 631
TspRI	CASTG	4 cut(s)	213, 352, 867, 997
Van91I	CCANNNNNTGG	1 cut(s)	413
XapI	RAATTY	2 cut(s)	51, 912
XspI	CTAG	3 cut(s)	386, 924, 1080
ZrmI	AGTACT	2 cut(s)	161, 713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.