Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8485815.1

Orthogroup ID

OG0001100

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2047

Gene Structure 2047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8485815.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1085 bp

tgaaggcattccccagagataatccaatgacatcttgcagattgactgctttcctgggatacaaagcaggaatgacccatattgttagagatgttgaaaagccaggatcaaagctacacaaaaaggaaacatgtgaagcagttacagttattgaaacaccacccatggtggttgttggggttgtgggttatgtgaagacaccccgtggtctccgttctttggacacagtttgggcccagcacctgagtgaggaggtgaagagaagattctacaagaactggtgtaaatctaaaaagaaggcattcactaagcactcgaacaaatacgagagtgaaaatgggaaaagggacatccacgcccaattggagaaaatgaaaaagtactgctctgtgattcgtgttttagcccacactcagattagaaaaatgaagggactgaagcagaagaaagcccatttgatggagattcaggtgaatggtggagatattgcaaagaaggttgactatgcttacagcttctttgagaagcagattcctgttgatgctgttttccagaaagatgagatgattgacattattggggtgacaaagggaaaaggctatgagggtgtggttactcgctggggtgtcactcgtcttccccgtaagacccatcgtgggcttagaaaagtagcctgcattggtgcttggcatccagctagggtttcgtttactgttgccagggctgggcagaatggctaccatcatcgtactgagatgaacaagaagatatacaagcttggaaagtctgggcaggagtctcactctgcaatgaccgagtttgacaggacggagaaggatattacgcccatgggtggtttcccacattatggtggggtgaaagaggattatcttgtcataaagggctgctgtgtaggtccgaaaaagcgagttgttaccttgaggcagtcacttttgaagcagacatcacgggttgccatggaggagataaagctcaagttcattgatacgtcatccaaatttggccatggtcgtttccaaactacacaagagaaggcaaggttctatggccggctcaaggcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L3

Protein Analysis

360

Amino Acids

41.05

Weight (kDa)

10.01

Isoelectric Point (pI)

32.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G61580
fragaria_vesca	FvH4_2g13300 FvH4_2g13300 FvH4_2g13300 FvH4_6g25400 FvH4_6g25400 FvH4_6g25400 FvH4_6g25400
malus_domestica	MD04G1044600.v1.1 MD08G1242000.v1.1 MD15G1435700.v1.1
prunus_persica	Prupe.1G579300_v2.0.a1 Prupe.1G579300_v2.0.a1 Prupe.8G036200_v2.0.a1 Prupe.8G036200_v2.0.a1
pyrus_communis	pycom15g38440
rosa_chinensis	RchiOBHm_Chr2g0125851 RchiOBHm_Chr6g0274741 RchiOBHm_Chr7g0220671
rosa_laevigata	RLG00000002211
rosa_multiflora	Rmu_co8485815.1_g000001 Rmu_sc0006216.1_g000001 Rmu_sc0006223.1_g000009 Rmu_sc0013532.1_g000002 Rmu_ssc0000189.1_g000006
rosa_roxburghii	Rroxscaffold_2G00117610 Rroxscaffold_2G00117670 Rroxscaffold_3G00239250 Rroxscaffold_7G00193980
rosa_rugosa	Rorug02G0259500 Rorug02G0259600 Rorug02G0259700 Rorug02G0259800 Rorug02G0259900 Rorug06G0083600 Rorug07G0195800 Rorug07G0195900 Rorug07G0196000.1 Rorug07G0196100
rosa_samantha	Rh2CG307400 Rh6AG199400 Rh6BG203200 Rh6CG203400 Rh7AG336800 Rh7BG327700 Rh7CG354800 Rh7DG333400
rosa_wichuraiana	Rw2G025710 Rw6G017340 Rw7G028730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	459, 868
AclWI	GGATC	1 cut(s)	114
AcoI	YGGCCR	2 cut(s)	1023, 1068
AcsI	RAATTY	1 cut(s)	1018
AcuI	CTGAAG	1 cut(s)	457
AdeI	CACNNNGTG	1 cut(s)	205
AfaI	GTAC	2 cut(s)	382, 750
AfiI	CCNNNNNNNGG	8 cut(s)	219, 249, 459, 656, 725, 853, 868, 1077
AflIII	ACRYGT	1 cut(s)	130
AgsI	TTSAA	3 cut(s)	97, 154, 957
AjnI	CCWGG	3 cut(s)	53, 102, 718
AleI	CACNNNNGTG	1 cut(s)	245
AluBI	AGCT	5 cut(s)	114, 515, 697, 777, 993
AluI	AGCT	5 cut(s)	114, 515, 697, 777, 993
Alw26I	GTCTC	2 cut(s)	214, 803
AlwI	GGATC	1 cut(s)	114
AlwNI	CAGNNNCTG	1 cut(s)	243
AoxI	GGCC	3 cut(s)	233, 1023, 1068
ApaI	GGGCCC	1 cut(s)	237
ApeKI	GCWGC	1 cut(s)	905
ApoI	RAATTY	1 cut(s)	1018
Asp700I	GAANNNNTTC	2 cut(s)	7, 301
AspS9I	GGNCC	3 cut(s)	233, 234, 916
AsuHPI	GGTGA	4 cut(s)	267, 483, 594, 888
AvaII	GGWCC	1 cut(s)	916
BaeGI	GKGCMC	1 cut(s)	237
BalI	TGGCCA	1 cut(s)	1025
BanII	GRGCYC	1 cut(s)	237
BbsI	GAAGAC	2 cut(s)	202, 628
BbvI	GCAGC	1 cut(s)	892
BccI	CCATC	3 cut(s)	453, 659, 749
BciT130I	CCWGG	3 cut(s)	55, 104, 720
BciVI	GTATCC	1 cut(s)	52
BcoDI	GTCTC	2 cut(s)	214, 803
BfaI	CTAG	1 cut(s)	698
BfuI	GTATCC	1 cut(s)	52
BisI	GCNGC	1 cut(s)	906
BlsI	GCNGC	1 cut(s)	907
BmcAI	AGTACT	1 cut(s)	382
Bme1390I	CCNGG	3 cut(s)	55, 104, 720
Bme18I	GGWCC	1 cut(s)	916
BmgT120I	GGNCC	3 cut(s)	233, 234, 916
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	3 cut(s)	55, 104, 720
BmsI	GCATC	2 cut(s)	531, 699
BpiI	GAAGAC	2 cut(s)	202, 628
BplI	GAGNNNNNCTC	2 cut(s)	787, 819
BpuEI	CTTGAG	3 cut(s)	960, 979, 1060
BsaI	GGTCTC	1 cut(s)	214
BsaJI	CCNNGG	7 cut(s)	54, 164, 204, 719, 848, 977, 1026
Bsc4I	CCNNNNNNNGG	8 cut(s)	219, 249, 459, 656, 725, 853, 868, 1077
Bse118I	RCCGGY	1 cut(s)	1070
Bse1I	ACTGG	1 cut(s)	283
Bse3DI	GCAATG	1 cut(s)	815
BseBI	CCWGG	3 cut(s)	55, 104, 720
BseDI	CCNNGG	7 cut(s)	54, 164, 204, 719, 848, 977, 1026
BseGI	GGATG	3 cut(s)	350, 690, 1012
BseLI	CCNNNNNNNGG	8 cut(s)	219, 249, 459, 656, 725, 853, 868, 1077
BseMI	GCAATG	1 cut(s)	815
BseMII	CTCAG	3 cut(s)	235, 427, 743
BseNI	ACTGG	1 cut(s)	283
BseRI	GAGGAG	2 cut(s)	265, 997
BseSI	GKGCMC	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	892
BseYI	CCCAGC	3 cut(s)	236, 620, 724
BshFI	GGCC	3 cut(s)	235, 1025, 1070
BsiSI	CCGG	1 cut(s)	1071
BslFI	GGGAC	2 cut(s)	361, 446
BslI	CCNNNNNNNGG	8 cut(s)	219, 249, 459, 656, 725, 853, 868, 1077
BsmAI	GTCTC	2 cut(s)	214, 803
BsmFI	GGGAC	2 cut(s)	361, 446
BsmI	GAATGC	2 cut(s)	7, 301
BsnI	GGCC	3 cut(s)	235, 1025, 1070
Bso31I	GGTCTC	1 cut(s)	214
Bsp120I	GGGCCC	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	1 cut(s)	106
Bsp19I	CCATGG	4 cut(s)	164, 848, 977, 1026
BspANI	GGCC	3 cut(s)	235, 1025, 1070
BspCNI	CTCAG	3 cut(s)	236, 426, 744
BspLI	GGNNCC	1 cut(s)	235
BspPI	GGATC	1 cut(s)	114
BspTNI	GGTCTC	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	815
BsrFI	RCCGGY	1 cut(s)	1070
BsrI	ACTGG	1 cut(s)	283
BssAI	RCCGGY	1 cut(s)	1070
BssECI	CCNNGG	7 cut(s)	54, 164, 204, 719, 848, 977, 1026
BssMI	GATC	1 cut(s)	106
BssT1I	CCWWGG	4 cut(s)	164, 848, 977, 1026
Bst2UI	CCWGG	3 cut(s)	55, 104, 720
Bst4CI	ACNGT	3 cut(s)	147, 228, 714
Bst6I	CTCTTC	1 cut(s)	253
BstC8I	GCNNGC	2 cut(s)	675, 1072
BstDEI	CTNAG	5 cut(s)	244, 308, 413, 661, 752
BstDSI	CCRYGG	5 cut(s)	164, 204, 848, 977, 1026
BstENI	CCTNNNNNAGG	1 cut(s)	247
BstF5I	GGATG	3 cut(s)	350, 690, 1012
BstKTI	GATC	1 cut(s)	109
BstMAI	GTCTC	2 cut(s)	214, 803
BstMBI	GATC	1 cut(s)	106
BstNI	CCWGG	3 cut(s)	55, 104, 720
BstNSI	RCATGY	1 cut(s)	134
BstSCI	CCNGG	3 cut(s)	53, 102, 718
BstSLI	GKGCMC	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	892
BstV2I	GAAGAC	2 cut(s)	202, 628
BsuI	GTATCC	1 cut(s)	52
BsuRI	GGCC	3 cut(s)	235, 1025, 1070
BtgI	CCRYGG	5 cut(s)	164, 204, 848, 977, 1026
BtsCI	GGATG	3 cut(s)	350, 690, 1012
Cac8I	GCNNGC	2 cut(s)	675, 1072
CaiI	CAGNNNCTG	1 cut(s)	243
Cfr10I	RCCGGY	1 cut(s)	1070
Cfr13I	GGNCC	3 cut(s)	233, 234, 916
Csp6I	GTAC	2 cut(s)	381, 749
CviAII	CATG	5 cut(s)	131, 165, 849, 978, 1027
CviQI	GTAC	2 cut(s)	381, 749
DdeI	CTNAG	5 cut(s)	244, 308, 413, 661, 752
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
DraIII	CACNNNGTG	1 cut(s)	205
EaeI	YGGCCR	2 cut(s)	1023, 1068
Eam1104I	CTCTTC	1 cut(s)	253
EarI	CTCTTC	1 cut(s)	253
Eco130I	CCWWGG	4 cut(s)	164, 848, 977, 1026
Eco24I	GRGCYC	1 cut(s)	237
Eco31I	GGTCTC	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	916
Eco57I	CTGAAG	1 cut(s)	457
EcoNI	CCTNNNNNAGG	1 cut(s)	247
EcoRII	CCWGG	3 cut(s)	53, 102, 718
EcoT14I	CCWWGG	4 cut(s)	164, 848, 977, 1026
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	4 cut(s)	164, 848, 977, 1026
FaeI	CATG	5 cut(s)	134, 168, 852, 981, 1030
FaqI	GGGAC	2 cut(s)	361, 446
FatI	CATG	5 cut(s)	130, 164, 848, 977, 1026
Fnu4HI	GCNGC	1 cut(s)	906
FokI	GGATG	3 cut(s)	337, 677, 999
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	1 cut(s)	906
FspBI	CTAG	1 cut(s)	698
GluI	GCNGC	1 cut(s)	906
GsaI	CCCAGC	3 cut(s)	240, 624, 728
HaeIII	GGCC	3 cut(s)	235, 1025, 1070
HapII	CCGG	1 cut(s)	1071
Hin1II	CATG	5 cut(s)	134, 168, 852, 981, 1030
HincII	GTYRAC	1 cut(s)	501
HindII	GTYRAC	1 cut(s)	501
HindIII	AAGCTT	1 cut(s)	775
HinfI	GANTC	5 cut(s)	266, 393, 465, 531, 796
HpaII	CCGG	1 cut(s)	1071
HphI	GGTGA	4 cut(s)	267, 483, 594, 888
Hpy166II	GTNNAC	2 cut(s)	501, 710
Hpy188I	TCNGA	2 cut(s)	416, 920
Hpy188III	TCNNGA	1 cut(s)	552
Hpy8I	GTNNAC	2 cut(s)	501, 710
HpyAV	CCTTC	5 cut(s)	291, 423, 489, 828, 1047
HpyCH4III	ACNGT	3 cut(s)	147, 228, 714
HpyCH4IV	ACGT	1 cut(s)	1009
HpyCH4V	TGCA	4 cut(s)	38, 490, 677, 808
HpyF3I	CTNAG	5 cut(s)	244, 308, 413, 661, 752
HpySE526I	ACGT	1 cut(s)	1009
Hsp92II	CATG	5 cut(s)	134, 168, 852, 981, 1030
KroI	GCCGGC	1 cut(s)	1070
KroNI	GCCGGC	1 cut(s)	1072
Kzo9I	GATC	1 cut(s)	106
Lsp1109I	GCAGC	1 cut(s)	892
LweI	GCATC	2 cut(s)	531, 699
MaeI	CTAG	1 cut(s)	698
MaeII	ACGT	1 cut(s)	1009
MaeIII	GTNAC	6 cut(s)	141, 582, 612, 627, 933, 947
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	6 cut(s)	207, 270, 275, 456, 628, 777
MfeI	CAATTG	1 cut(s)	361
MhlI	GDGCHC	1 cut(s)	237
MlsI	TGGCCA	1 cut(s)	1025
MluCI	AATT	2 cut(s)	361, 1018
MluNI	TGGCCA	1 cut(s)	1025
MlyI	GAGTC	1 cut(s)	805
MnlI	CCTC	6 cut(s)	243, 246, 597, 876, 935, 975
Mox20I	TGGCCA	1 cut(s)	1025
MroNI	GCCGGC	1 cut(s)	1070
MroXI	GAANNNNTTC	2 cut(s)	7, 301
MscI	TGGCCA	1 cut(s)	1025
MslI	CAYNNNNRTG	2 cut(s)	245, 869
Msp20I	TGGCCA	1 cut(s)	1025
MspI	CCGG	1 cut(s)	1071
MspR9I	CCNGG	3 cut(s)	55, 104, 720
MunI	CAATTG	1 cut(s)	361
Mva1269I	GAATGC	2 cut(s)	7, 301
MvaI	CCWGG	3 cut(s)	55, 104, 720
NaeI	GCCGGC	1 cut(s)	1072
NcoI	CCATGG	4 cut(s)	164, 848, 977, 1026
NdeII	GATC	1 cut(s)	106
NgoMIV	GCCGGC	1 cut(s)	1070
NlaIII	CATG	5 cut(s)	134, 168, 852, 981, 1030
NlaIV	GGNNCC	1 cut(s)	235
NmuCI	GTSAC	3 cut(s)	582, 627, 947
NspI	RCATGY	1 cut(s)	134
OliI	CACNNNNGTG	1 cut(s)	245
PciI	ACATGT	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	639
PctI	GAATGC	2 cut(s)	7, 301
PdiI	GCCGGC	1 cut(s)	1072
PdmI	GAANNNNTTC	2 cut(s)	7, 301
PfeI	GAWTC	4 cut(s)	266, 393, 465, 531
PflMI	CCANNNNNTGG	2 cut(s)	459, 868
PkrI	GCNGC	1 cut(s)	907
PleI	GAGTC	1 cut(s)	804
PpsI	GAGTC	1 cut(s)	804
PscI	ACATGT	1 cut(s)	130
Psp6I	CCWGG	3 cut(s)	53, 102, 718
PspFI	CCCAGC	3 cut(s)	236, 620, 724
PspGI	CCWGG	3 cut(s)	53, 102, 718
PspN4I	GGNNCC	1 cut(s)	235
PspOMI	GGGCCC	1 cut(s)	233
PspPI	GGNCC	3 cut(s)	233, 234, 916
PstNI	CAGNNNCTG	1 cut(s)	243
RsaI	GTAC	2 cut(s)	382, 750
RsaNI	GTAC	2 cut(s)	381, 749
RseI	CAYNNNNRTG	2 cut(s)	245, 869
SatI	GCNGC	1 cut(s)	906
Sau3AI	GATC	1 cut(s)	106
Sau96I	GGNCC	3 cut(s)	233, 234, 916
ScaI	AGTACT	1 cut(s)	382
SchI	GAGTC	1 cut(s)	805
ScrFI	CCNGG	3 cut(s)	55, 104, 720
SduI	GDGCHC	1 cut(s)	237
SfaNI	GCATC	2 cut(s)	531, 699
SinI	GGWCC	1 cut(s)	916
SmiMI	CAYNNNNRTG	2 cut(s)	245, 869
SmlI	CTYRAG	3 cut(s)	939, 994, 1075
SmoI	CTYRAG	3 cut(s)	939, 994, 1075
Sse9I	AATT	2 cut(s)	361, 1018
SspMI	CTAG	1 cut(s)	698
StyD4I	CCNGG	3 cut(s)	53, 102, 718
StyI	CCWWGG	4 cut(s)	164, 848, 977, 1026
TaaI	ACNGT	3 cut(s)	147, 228, 714
TaiI	ACGT	1 cut(s)	1012
TaqI	TCGA	1 cut(s)	316
TaqII	GACCGA	1 cut(s)	829
TasI	AATT	2 cut(s)	361, 1018
TatI	WGTACW	1 cut(s)	380
TfiI	GAWTC	4 cut(s)	266, 393, 465, 531
TseFI	GTSAC	3 cut(s)	582, 627, 947
TseI	GCWGC	1 cut(s)	905
Tsp45I	GTSAC	3 cut(s)	582, 627, 947
TspDTI	ATGAA	4 cut(s)	388, 442, 772, 990
TspGWI	ACGGA	2 cut(s)	202, 844
Van91I	CCANNNNNTGG	2 cut(s)	459, 868
VpaK11BI	GGWCC	1 cut(s)	916
XagI	CCTNNNNNAGG	1 cut(s)	247
XapI	RAATTY	1 cut(s)	1018
XceI	RCATGY	1 cut(s)	134
XmnI	GAANNNNTTC	2 cut(s)	7, 301
XspI	CTAG	1 cut(s)	698
ZrmI	AGTACT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.