Rmu_sc0013532.1_g000002

Belongs to the universal ribosomal protein uL3 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013532.1
Physical Location & Seq
Forward (+)
5219 .. 10699
5481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013532.1_g000002.1.cds

Sequence Viewer

Length: 1479 bp
atgttactcaactctcaaaaggagatgtcaccccatgacctccgatcatcagacctccccggtctccagatcaaaacattaagcaaatcgctctggacccaaaatgttaaaccaaaacaaaaggagatgtcaccctgtgacctccgaatcatccgacctccccgaatcggaaaatccggtcggatcccgaagcctagactttgggcgctccgatctgctacttcaggtgacccattgagcaacccaccaccacagggaggtcatgctcgccgctgccgctctctcaagctcaggagaaggaggaggagaatgtctcacaggaagtttgagcaccccaggcatggatcccttggatttcttccaaggaagcgagctgctcgtcacagaggaaaagtgaaggctttccccaaggatgacccatccaagccctgcaagctgactgctttccttggttacaaggctgggatgactcacattgtcagggatgtcgagaagcctggatcaaagctgcacaagaaggagacatgtgaggctgtcactatcattgaggctcctccaatggtcgttgttggtgttgtgggttatgtgaagacaccccgcggccttcgttctttgaacacagtgtgggctcagcatctcagtgaggaggttaagaggaggttttacaagaactggtgcaagtccaagaagaaggcttttgcaaagtactccaagacctatgaaactgacgaaggaaagaagaatattgaagggcagtttgagaaactgattaaatatgctactgttattcgagttttggctcacactcagatcaggaagatgaagggtttgaagcagaagaaagcacatctcatggagatccaggtgaatggtggcacaattgctcaaaaggttgaatttgcaaaaagcttctttgagaagcaaatccctattgatgccgtcttccagaaagatgaaatgattgacatcattggtgtgaccaagggtaagggttatgaaggtgttgttactcgttggggtgtcacccggcttccccgtaagacccataggggtctgcgtaaggtcgcttgtattggtgcatggcatcctgccagagtttcatttacagttgccagggctggtcaaaatggataccatcaccgtactgaaatgaacaagaaaatttacaagcttggaaaggctggacaagagtcacacactgctgtcactgagtttgacaggactgagaaggacatcactccaattggtggcttcccccattatggtgtggtgaaagatgactacattctgatcaagggatgctgtgttggacccaagaagagggttgttacacttcgccagtccctgctcaagcagacctcccgtcttgctcttgaggatatcaagctcaagttcatcgatacctcctcaaagttcgggcatggtcgcttccagactacacaggagaaacagaagtactatggacgactcaaggcataa

Protein Analysis

492

Amino Acids

56.12

Weight (kDa)

10.42

Isoelectric Point (pI)

44.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1247
AccBSI CCGCTC 1 cut(s) 279
AccII CGCG 1 cut(s) 600
AciI CCGC 4 cut(s) 271, 277, 598, 600
AclWI GGATC 6 cut(s) 178, 191, 339, 352, 508, 853
AcsI RAATTY 2 cut(s) 896, 1161
AcuI CTGAAG 1 cut(s) 207
AdeI CACNNNGTG 2 cut(s) 137, 624
AfaI GTAC 3 cut(s) 707, 1144, 1457
AfiI CCNNNNNNNGG 7 cut(s) 167, 254, 257, 341, 1247, 1262, 1320
AflIII ACRYGT 1 cut(s) 524
AgsI TTSAA 4 cut(s) 616, 749, 832, 896
AhdI GACNNNNNGTC 1 cut(s) 1362
AjnI CCWGG 4 cut(s) 335, 496, 861, 1112
AluBI AGCT 7 cut(s) 289, 374, 436, 508, 909, 1171, 1387
AluI AGCT 7 cut(s) 289, 374, 436, 508, 909, 1171, 1387
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 3 cut(s) 68, 318, 515
AlwI GGATC 6 cut(s) 178, 191, 339, 352, 508, 853
AlwNI CAGNNNCTG 1 cut(s) 1345
AoxI GGCC 1 cut(s) 601
ApeKI GCWGC 3 cut(s) 273, 374, 508
ApoI RAATTY 2 cut(s) 896, 1161
Asp700I GAANNNNTTC 1 cut(s) 401
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 2 cut(s) 96, 1310
AsuC2I CCSGG 2 cut(s) 60, 1027
AsuHPI GGTGA 7 cut(s) 21, 123, 239, 877, 1015, 1130, 1282
AvaII GGWCC 2 cut(s) 96, 1310
BamHI GGATCC 2 cut(s) 183, 344
BanII GRGCYC 1 cut(s) 631
BbsI GAAGAC 2 cut(s) 596, 934
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 3 cut(s) 260, 361, 495
BccI CCATC 2 cut(s) 427, 1143
BceAI ACGGC 1 cut(s) 923
BciT130I CCWGG 4 cut(s) 337, 498, 863, 1114
BciVI GTATCC 1 cut(s) 1124
BclI TGATCA 1 cut(s) 1290
BcnI CCSGG 2 cut(s) 60, 1027
BcoDI GTCTC 3 cut(s) 68, 318, 515
BfaI CTAG 1 cut(s) 195
BfoI RGCGCY 1 cut(s) 209
BfuI GTATCC 1 cut(s) 1124
BisI GCNGC 6 cut(s) 271, 274, 277, 375, 509, 601
BlpI GCTNAGC 1 cut(s) 630
BlsI GCNGC 6 cut(s) 272, 275, 278, 376, 510, 602
BmcAI AGTACT 2 cut(s) 707, 1457
Bme1390I CCNGG 6 cut(s) 60, 337, 498, 863, 1027, 1114
Bme18I GGWCC 2 cut(s) 96, 1310
BmeRI GACNNNNNGTC 1 cut(s) 1362
BmgT120I GGNCC 2 cut(s) 96, 1310
BmiI GGNNCC 5 cut(s) 98, 185, 346, 552, 1312
BmrFI CCNGG 6 cut(s) 60, 337, 498, 863, 1027, 1114
BmsI GCATC 4 cut(s) 643, 925, 1093, 1289
BoxI GACNNNNGTC 1 cut(s) 1189
BpiI GAAGAC 2 cut(s) 596, 934
BplI GAGNNNNNCTC 2 cut(s) 298, 330
BpmI CTGGAG 1 cut(s) 50
Bpu10I CCTNAGC 1 cut(s) 290
Bpu1102I GCTNAGC 1 cut(s) 630
BpuEI CTTGAG 5 cut(s) 269, 1334, 1373, 1394, 1454
BpuMI CCSGG 2 cut(s) 60, 1027
Bsa29I ATCGAT 1 cut(s) 1398
BsaBI GATNNNNATC 1 cut(s) 965
BsaI GGTCTC 1 cut(s) 68
BsaJI CCNNGG 9 cut(s) 58, 335, 349, 362, 408, 448, 598, 981, 1113
BsaWI WCCGGW 1 cut(s) 176
Bsc4I CCNNNNNNNGG 7 cut(s) 167, 254, 257, 341, 1247, 1262, 1320
Bse1I ACTGG 2 cut(s) 677, 1339
Bse8I GATNNNNATC 1 cut(s) 965
BseBI CCWGG 4 cut(s) 337, 498, 863, 1114
BseCI ATCGAT 1 cut(s) 1398
BseDI CCNNGG 9 cut(s) 58, 335, 349, 362, 408, 448, 598, 981, 1113
BseGI GGATG 7 cut(s) 150, 418, 419, 471, 490, 1084, 1304
BseJI GATNNNNATC 1 cut(s) 965
BseLI CCNNNNNNNGG 7 cut(s) 167, 254, 257, 341, 1247, 1262, 1320
BseMII CTCAG 6 cut(s) 304, 644, 652, 821, 1200, 1215
BseNI ACTGG 2 cut(s) 677, 1339
BseRI GAGGAG 6 cut(s) 316, 319, 543, 659, 670, 1396
BseXI GCAGC 3 cut(s) 260, 361, 495
BseYI CCCAGC 1 cut(s) 461
BsgI GTGCAG 1 cut(s) 494
Bsh1236I CGCG 1 cut(s) 600
Bsh1285I CGRYCG 1 cut(s) 181
BshFI GGCC 1 cut(s) 603
BshVI ATCGAT 1 cut(s) 1398
BsiEI CGRYCG 1 cut(s) 181
BsiHKAI GWGCWC 1 cut(s) 333
BsiSI CCGG 3 cut(s) 60, 177, 1027
BslFI GGGAC 1 cut(s) 1327
BslI CCNNNNNNNGG 7 cut(s) 167, 254, 257, 341, 1247, 1262, 1320
BsmAI GTCTC 3 cut(s) 68, 318, 515
BsmFI GGGAC 1 cut(s) 1327
BsnI GGCC 1 cut(s) 603
Bso31I GGTCTC 1 cut(s) 68
Bsp1286I GDGCHC 2 cut(s) 333, 631
Bsp143I GATC 9 cut(s) 44, 69, 183, 212, 344, 500, 810, 858, 1290
Bsp1720I GCTNAGC 1 cut(s) 630
BspACI CCGC 4 cut(s) 271, 277, 598, 600
BspANI GGCC 1 cut(s) 603
BspCNI CTCAG 6 cut(s) 303, 643, 651, 820, 1201, 1216
BspDI ATCGAT 1 cut(s) 1398
BspFNI CGCG 1 cut(s) 600
BspLI GGNNCC 5 cut(s) 98, 185, 346, 552, 1312
BspPI GGATC 6 cut(s) 178, 191, 339, 352, 508, 853
BspTNI GGTCTC 1 cut(s) 68
BsrBI CCGCTC 1 cut(s) 279
BsrI ACTGG 2 cut(s) 677, 1339
BssECI CCNNGG 9 cut(s) 58, 335, 349, 362, 408, 448, 598, 981, 1113
BssMI GATC 9 cut(s) 44, 69, 183, 212, 344, 500, 810, 858, 1290
BssT1I CCWWGG 5 cut(s) 349, 362, 408, 448, 981
Bst2UI CCWGG 4 cut(s) 337, 498, 863, 1114
Bst4CI ACNGT 4 cut(s) 622, 784, 1108, 1142
Bst6I CTCTTC 1 cut(s) 1313
BstC8I GCNNGC 3 cut(s) 268, 372, 434
BstDEI CTNAG 6 cut(s) 290, 630, 638, 807, 1209, 1224
BstDSI CCRYGG 1 cut(s) 598
BstEII GGTNACC 1 cut(s) 227
BstF5I GGATG 7 cut(s) 150, 418, 419, 471, 490, 1084, 1304
BstFNI CGCG 1 cut(s) 600
BstH2I RGCGCY 1 cut(s) 209
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 9 cut(s) 47, 72, 186, 215, 347, 503, 813, 861, 1293
BstMAI GTCTC 3 cut(s) 68, 318, 515
BstMBI GATC 9 cut(s) 44, 69, 183, 212, 344, 500, 810, 858, 1290
BstMCI CGRYCG 1 cut(s) 181
BstMWI GCNNNNNNNGC 3 cut(s) 276, 337, 433
BstNI CCWGG 4 cut(s) 337, 498, 863, 1114
BstNSI RCATGY 1 cut(s) 528
BstPAI GACNNNNGTC 1 cut(s) 1189
BstPI GGTNACC 1 cut(s) 227
BstSCI CCNGG 6 cut(s) 58, 335, 496, 861, 1025, 1112
BstUI CGCG 1 cut(s) 600
BstV1I GCAGC 3 cut(s) 260, 361, 495
BstV2I GAAGAC 2 cut(s) 596, 934
BstX2I RGATCY 3 cut(s) 183, 344, 858
BstXI CCANNNNNNTGG 1 cut(s) 869
BstYI RGATCY 3 cut(s) 183, 344, 858
Bsu15I ATCGAT 1 cut(s) 1398
BsuI GTATCC 1 cut(s) 1124
BsuRI GGCC 1 cut(s) 603
BsuTUI ATCGAT 1 cut(s) 1398
BtgI CCRYGG 1 cut(s) 598
BtsCI GGATG 7 cut(s) 150, 418, 419, 471, 490, 1084, 1304
BtsI GCAGTG 1 cut(s) 1197
BtsIMutI CAGTG 4 cut(s) 627, 646, 1197, 1206
Cac8I GCNNGC 3 cut(s) 268, 372, 434
CaiI CAGNNNCTG 1 cut(s) 1345
CfoI GCGC 1 cut(s) 208
Cfr13I GGNCC 2 cut(s) 96, 1310
Cfr42I CCGCGG 1 cut(s) 601
ClaI ATCGAT 1 cut(s) 1398
Csp6I GTAC 3 cut(s) 706, 1143, 1456
CviAII CATG 7 cut(s) 35, 263, 341, 525, 853, 1080, 1421
CviQI GTAC 3 cut(s) 706, 1143, 1456
DdeI CTNAG 6 cut(s) 290, 630, 638, 807, 1209, 1224
DpnI GATC 9 cut(s) 46, 71, 185, 214, 346, 502, 812, 860, 1292
DpnII GATC 9 cut(s) 44, 69, 183, 212, 344, 500, 810, 858, 1290
DraIII CACNNNGTG 2 cut(s) 137, 624
DriI GACNNNNNGTC 1 cut(s) 1362
Eam1104I CTCTTC 1 cut(s) 1313
Eam1105I GACNNNNNGTC 1 cut(s) 1362
EarI CTCTTC 1 cut(s) 1313
Eco130I CCWWGG 5 cut(s) 349, 362, 408, 448, 981
Eco24I GRGCYC 1 cut(s) 631
Eco31I GGTCTC 1 cut(s) 68
Eco32I GATATC 1 cut(s) 1381
Eco47I GGWCC 2 cut(s) 96, 1310
Eco57I CTGAAG 1 cut(s) 207
Eco91I GGTNACC 1 cut(s) 227
EcoO65I GGTNACC 1 cut(s) 227
EcoRII CCWGG 4 cut(s) 335, 496, 861, 1112
EcoRV GATATC 1 cut(s) 1381
EcoT14I CCWWGG 5 cut(s) 349, 362, 408, 448, 981
EcoT38I GRGCYC 1 cut(s) 631
ErhI CCWWGG 5 cut(s) 349, 362, 408, 448, 981
FaeI CATG 7 cut(s) 38, 266, 344, 528, 856, 1083, 1424
FaqI GGGAC 1 cut(s) 1327
FatI CATG 7 cut(s) 34, 262, 340, 524, 852, 1079, 1420
FauI CCCGC 1 cut(s) 605
FbaI TGATCA 1 cut(s) 1290
Fnu4HI GCNGC 6 cut(s) 271, 274, 277, 375, 509, 601
FokI GGATG 7 cut(s) 137, 406, 425, 478, 497, 1071, 1311
FriOI GRGCYC 1 cut(s) 631
Fsp4HI GCNGC 6 cut(s) 271, 274, 277, 375, 509, 601
FspBI CTAG 1 cut(s) 195
GlaI GCGC 1 cut(s) 207
GluI GCNGC 6 cut(s) 271, 274, 277, 375, 509, 601
GsaI CCCAGC 1 cut(s) 465
GsuI CTGGAG 1 cut(s) 50
HaeII RGCGCY 1 cut(s) 209
HaeIII GGCC 1 cut(s) 603
HapII CCGG 3 cut(s) 60, 177, 1027
HhaI GCGC 1 cut(s) 208
Hin1II CATG 7 cut(s) 38, 266, 344, 528, 856, 1083, 1424
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HindIII AAGCTT 2 cut(s) 907, 1169
HinfI GANTC 5 cut(s) 147, 165, 469, 1190, 1467
HpaII CCGG 3 cut(s) 60, 177, 1027
HphI GGTGA 7 cut(s) 21, 123, 239, 877, 1015, 1130, 1282
Hpy188I TCNGA 9 cut(s) 44, 52, 146, 155, 170, 183, 212, 810, 1290
Hpy188III TCNNGA 9 cut(s) 67, 94, 187, 292, 490, 814, 946, 1373, 1432
HpyCH4III ACNGT 4 cut(s) 622, 784, 1108, 1142
HpyCH4V TGCA 6 cut(s) 432, 511, 678, 701, 902, 1079
HpyF10VI GCNNNNNNNGC 3 cut(s) 276, 337, 433
HpyF3I CTNAG 6 cut(s) 290, 630, 638, 807, 1209, 1224
Hsp92II CATG 7 cut(s) 38, 266, 344, 528, 856, 1083, 1424
HspAI GCGC 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 1290
KspI CCGCGG 1 cut(s) 601
Kzo9I GATC 9 cut(s) 44, 69, 183, 212, 344, 500, 810, 858, 1290
LmnI GCTCC 2 cut(s) 213, 556
Lsp1109I GCAGC 3 cut(s) 260, 361, 495
LweI GCATC 4 cut(s) 643, 925, 1093, 1289
MaeI CTAG 1 cut(s) 195
MalI GATC 9 cut(s) 46, 71, 185, 214, 346, 502, 812, 860, 1292
MbiI CCGCTC 1 cut(s) 279
MboI GATC 9 cut(s) 44, 69, 183, 212, 344, 500, 810, 858, 1290
MboII GAAGA 8 cut(s) 350, 601, 700, 751, 829, 850, 934, 1330
MfeI CAATTG 2 cut(s) 879, 1242
MflI RGATCY 3 cut(s) 183, 344, 858
MhlI GDGCHC 2 cut(s) 333, 631
MluCI AATT 4 cut(s) 879, 896, 1161, 1242
MlyI GAGTC 3 cut(s) 463, 1199, 1461
MmeI TCCRAC 3 cut(s) 161, 178, 1288
MroXI GAANNNNTTC 1 cut(s) 401
MseI TTAA 4 cut(s) 80, 108, 651, 771
MslI CAYNNNNRTG 3 cut(s) 639, 974, 1263
MspA1I CMGCKG 2 cut(s) 273, 600
MspI CCGG 3 cut(s) 60, 177, 1027
MspR9I CCNGG 6 cut(s) 60, 337, 498, 863, 1027, 1114
MunI CAATTG 2 cut(s) 879, 1242
MvaI CCWGG 4 cut(s) 337, 498, 863, 1114
MvnI CGCG 1 cut(s) 600
MwoI GCNNNNNNNGC 3 cut(s) 276, 337, 433
NciI CCSGG 2 cut(s) 60, 1027
NdeII GATC 9 cut(s) 44, 69, 183, 212, 344, 500, 810, 858, 1290
NlaIII CATG 7 cut(s) 38, 266, 344, 528, 856, 1083, 1424
NlaIV GGNNCC 5 cut(s) 98, 185, 346, 552, 1312
NspI RCATGY 1 cut(s) 528
PciI ACATGT 1 cut(s) 524
PdmI GAANNNNTTC 1 cut(s) 401
PfeI GAWTC 2 cut(s) 147, 165
PflMI CCANNNNNTGG 1 cut(s) 1247
PkrI GCNGC 6 cut(s) 272, 275, 278, 376, 510, 602
PleI GAGTC 3 cut(s) 463, 1198, 1461
PpsI GAGTC 3 cut(s) 463, 1198, 1461
PscI ACATGT 1 cut(s) 524
PshAI GACNNNNGTC 1 cut(s) 1189
Psp6I CCWGG 4 cut(s) 335, 496, 861, 1112
PspEI GGTNACC 1 cut(s) 227
PspFI CCCAGC 1 cut(s) 461
PspGI CCWGG 4 cut(s) 335, 496, 861, 1112
PspN4I GGNNCC 5 cut(s) 98, 185, 346, 552, 1312
PspPI GGNCC 2 cut(s) 96, 1310
PstNI CAGNNNCTG 1 cut(s) 1345
PsuI RGATCY 3 cut(s) 183, 344, 858
RsaI GTAC 3 cut(s) 707, 1144, 1457
RsaNI GTAC 3 cut(s) 706, 1143, 1456
RseI CAYNNNNRTG 3 cut(s) 639, 974, 1263
SacII CCGCGG 1 cut(s) 601
SaqAI TTAA 4 cut(s) 80, 108, 651, 771
SatI GCNGC 6 cut(s) 271, 274, 277, 375, 509, 601
Sau3AI GATC 9 cut(s) 44, 69, 183, 212, 344, 500, 810, 858, 1290
Sau96I GGNCC 2 cut(s) 96, 1310
ScaI AGTACT 2 cut(s) 707, 1457
SchI GAGTC 3 cut(s) 463, 1199, 1461
ScrFI CCNGG 6 cut(s) 60, 337, 498, 863, 1027, 1114
SduI GDGCHC 2 cut(s) 333, 631
SfaNI GCATC 4 cut(s) 643, 925, 1093, 1289
Sfr303I CCGCGG 1 cut(s) 601
SgrBI CCGCGG 1 cut(s) 601
SinI GGWCC 2 cut(s) 96, 1310
SmiMI CAYNNNNRTG 3 cut(s) 639, 974, 1263
SmlI CTYRAG 5 cut(s) 284, 1349, 1373, 1388, 1469
SmoI CTYRAG 5 cut(s) 284, 1349, 1373, 1388, 1469
Sse9I AATT 4 cut(s) 879, 896, 1161, 1242
SsiI CCGC 4 cut(s) 271, 277, 598, 600
SspI AATATT 1 cut(s) 745
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 6 cut(s) 58, 335, 496, 861, 1025, 1112
StyI CCWWGG 5 cut(s) 349, 362, 408, 448, 981
TaaI ACNGT 4 cut(s) 622, 784, 1108, 1142
TaqI TCGA 3 cut(s) 489, 790, 1398
TasI AATT 4 cut(s) 879, 896, 1161, 1242
TatI WGTACW 2 cut(s) 705, 1455
TauI GCSGC 3 cut(s) 273, 279, 603
TfiI GAWTC 2 cut(s) 147, 165
Tru1I TTAA 4 cut(s) 80, 108, 651, 771
Tru9I TTAA 4 cut(s) 80, 108, 651, 771
TscAI CASTG 4 cut(s) 627, 646, 1204, 1213
TseI GCWGC 3 cut(s) 273, 374, 508
TspDTI ATGAA 7 cut(s) 735, 836, 969, 1011, 1089, 1166, 1384
TspRI CASTG 4 cut(s) 627, 646, 1204, 1213
Van91I CCANNNNNTGG 1 cut(s) 1247
VpaK11BI GGWCC 2 cut(s) 96, 1310
XapI RAATTY 2 cut(s) 896, 1161
XceI RCATGY 1 cut(s) 528
XcmI CCANNNNNNNNNTGG 1 cut(s) 869
XmnI GAANNNNTTC 1 cut(s) 401
XspI CTAG 1 cut(s) 195
ZrmI AGTACT 2 cut(s) 707, 1457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.