Prupe.8G036200_v2.0.a1

Belongs to the universal ribosomal protein uL3 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
3305650 .. 3308684
3035 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G036200.1

Sequence Viewer

Length: 1170 bp
ATGTCGCACAGGAAGTTTGAGCACCCCAGGCATGGATCCCTTGGGTTTCTTCCAAGGAAGCGAGCTGCTCGTCACAGAGGCAAAGTGAAGGCTTTCCCCAAGGATGACCCATCCAAACCCTGCAAGTTGACTGCTTTTCTTGGTTACAAGGCTGGCATGACTCACATTGTCAGAGATGTCGAGAAACCCGGATCAAAGCTTCACAAGAAGGAGACGTGCGAGGCTGTAACTATTATTGAGGCTCCTCCAATGGTTGTTGTTGGAGTTGTGGGTTATGTGAAGACACCACGTGGCCTTCGCTCTCTGAACACTGTGTGGGCTCAGCATCTTAGTGAGGAGGTGAAGAGGAGGTTCTACAAGAACTGGTGCAAGTCCAAGAAGAAGGCTTTTGCAAAATACTCCAAGAACTACGAAAGTGAAGAGGGAAAGAAGAGCATTGAATCACAGTTTGAGAAACTGATCAAATATGCTACTGTCATTCGTGTTCTGGCTCACACTCAGATCAGGAAGATGAAGGGACTGAAACAGAAGAAGGCACATCTTATGGAGATCCAGGTGAATGGAGGGACTATTGCTCAGAAAGTTGAATTTGCAAAAAGCTTCTTTGAGAAGCAGATCCCTATTGATGCTGTTTTCCAGAAAGATGAGATGATTGACATCATTGGTGTCACAAAGGGTAAAGGTTATGAAGGTGTTGTTACTCGTTGGGGTGTAACTCGTCTTCCCCGTAAGACTCACAGGGGTCTGAGGAAGGTGGCTTGTATTGGTGCCTGGCATCCTGCTAGAGTCTCATTTACAGTTGCCAGGGCTGGTCAGAATGGATACCACCACCGTACTGAGATGAACAAGAAGATTTATAAGCTTGGGAAGGCTGGGCAGGAGTCACACACTGCTGTCACTGAGTTTGACAGGACGGAGAAAGACATTACTCCCATTGGTGGCTTCCCTCACTATGGTGTGGTGAAGGATGATTACATTCTGATTAAGGGATGCTGCGTTGGACCCAAGAAGAGGGTTGTTACTCTTCGCCAGTCCCTGCTCAAGCAGACCTCTCGTCTTGCTCTTGAGGATATTAAACTCAAGTTCATCGATACCTCTTCAAAATTCGGGCACGGTCGCTTCCAGACAACACAGGAGAAACAGAAGTACTATGGTCGCCTCAAGGCATAA

Protein Analysis

390

Amino Acids

44.33

Weight (kDa)

10.14

Isoelectric Point (pI)

31.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 858
AccB1I GGYRCC 1 cut(s) 767
AclWI GGATC 5 cut(s) 30, 43, 199, 544, 610
AcsI RAATTY 2 cut(s) 587, 1103
AcvI CACGTG 1 cut(s) 290
AdeI CACNNNGTG 2 cut(s) 290, 315
AfaI GTAC 2 cut(s) 835, 1148
AfiI CCNNNNNNNGG 4 cut(s) 32, 938, 953, 1011
AgsI TTSAA 3 cut(s) 440, 587, 1101
AhdI GACNNNNNGTC 1 cut(s) 1053
AjiI CACGTC 1 cut(s) 216
AjnI CCWGG 4 cut(s) 26, 552, 770, 803
AleI CACNNNNGTG 1 cut(s) 954
AluBI AGCT 4 cut(s) 65, 199, 600, 862
AluI AGCT 4 cut(s) 65, 199, 600, 862
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 2 cut(s) 206, 793
AlwI GGATC 5 cut(s) 30, 43, 199, 544, 610
AlwNI CAGNNNCTG 1 cut(s) 1036
AoxI GGCC 1 cut(s) 292
ApeKI GCWGC 2 cut(s) 65, 993
ApoI RAATTY 2 cut(s) 587, 1103
Asp700I GAANNNNTTC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 1001
AsuC2I CCSGG 1 cut(s) 189
AsuHPI GGTGA 3 cut(s) 352, 568, 973
AvaII GGWCC 1 cut(s) 1001
BaeGI GKGCMC 1 cut(s) 1113
BamHI GGATCC 1 cut(s) 35
BanI GGYRCC 1 cut(s) 767
BanII GRGCYC 1 cut(s) 322
BarI GAAGNNNNNNTAC 4 cut(s) 705, 737, 956, 988
BbrPI CACGTG 1 cut(s) 290
BbsI GAAGAC 2 cut(s) 287, 713
Bbv12I GWGCWC 1 cut(s) 24
BbvI GCAGC 2 cut(s) 52, 980
BccI CCATC 1 cut(s) 118
BcgI CGANNNNNNTGC 2 cut(s) 1034, 1068
BciT130I CCWGG 4 cut(s) 28, 554, 772, 805
BciVI GTATCC 1 cut(s) 815
BclI TGATCA 1 cut(s) 459
BcnI CCSGG 1 cut(s) 189
BcoDI GTCTC 2 cut(s) 206, 793
BfaI CTAG 1 cut(s) 783
BfuI GTATCC 1 cut(s) 815
BisI GCNGC 2 cut(s) 66, 994
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 2 cut(s) 67, 995
BmcAI AGTACT 1 cut(s) 1148
Bme1390I CCNGG 5 cut(s) 28, 189, 554, 772, 805
Bme18I GGWCC 1 cut(s) 1001
BmeRI GACNNNNNGTC 1 cut(s) 1053
BmgBI CACGTC 1 cut(s) 216
BmgT120I GGNCC 1 cut(s) 1001
BmiI GGNNCC 4 cut(s) 37, 243, 769, 1003
BmrFI CCNGG 5 cut(s) 28, 189, 554, 772, 805
BmsI GCATC 4 cut(s) 334, 616, 784, 980
BpiI GAAGAC 2 cut(s) 287, 713
Bpu1102I GCTNAGC 1 cut(s) 321
BpuEI CTTGAG 4 cut(s) 1025, 1064, 1085, 1145
BpuMI CCSGG 1 cut(s) 189
Bsa29I ATCGAT 1 cut(s) 1089
BsaAI YACGTR 1 cut(s) 290
BsaBI GATNNNNATC 1 cut(s) 656
BsaJI CCNNGG 5 cut(s) 26, 40, 53, 99, 804
Bsc4I CCNNNNNNNGG 4 cut(s) 32, 938, 953, 1011
Bse1I ACTGG 2 cut(s) 368, 1030
Bse8I GATNNNNATC 1 cut(s) 656
BseBI CCWGG 4 cut(s) 28, 554, 772, 805
BseCI ATCGAT 1 cut(s) 1089
BseDI CCNNGG 5 cut(s) 26, 40, 53, 99, 804
BseGI GGATG 5 cut(s) 109, 110, 775, 973, 995
BseJI GATNNNNATC 1 cut(s) 656
BseLI CCNNNNNNNGG 4 cut(s) 32, 938, 953, 1011
BseMII CTCAG 6 cut(s) 335, 512, 590, 737, 828, 891
BseNI ACTGG 2 cut(s) 368, 1030
BseRI GAGGAG 3 cut(s) 234, 350, 361
BseSI GKGCMC 1 cut(s) 1113
BseXI GCAGC 2 cut(s) 52, 980
BseYI CCCAGC 1 cut(s) 872
Bsh1285I CGRYCG 1 cut(s) 1117
BshFI GGCC 1 cut(s) 294
BshNI GGYRCC 1 cut(s) 767
BshVI ATCGAT 1 cut(s) 1089
BsiEI CGRYCG 1 cut(s) 1117
BsiHKAI GWGCWC 1 cut(s) 24
BsiSI CCGG 1 cut(s) 189
BslFI GGGAC 3 cut(s) 531, 580, 1018
BslI CCNNNNNNNGG 4 cut(s) 32, 938, 953, 1011
BsmAI GTCTC 2 cut(s) 206, 793
BsmBI CGTCTC 1 cut(s) 206
BsmFI GGGAC 3 cut(s) 531, 580, 1018
BsnI GGCC 1 cut(s) 294
Bsp1286I GDGCHC 3 cut(s) 24, 322, 1113
Bsp143I GATC 6 cut(s) 35, 191, 459, 501, 549, 615
Bsp1720I GCTNAGC 1 cut(s) 321
BspANI GGCC 1 cut(s) 294
BspCNI CTCAG 6 cut(s) 334, 511, 589, 738, 829, 892
BspDI ATCGAT 1 cut(s) 1089
BspLI GGNNCC 4 cut(s) 37, 243, 769, 1003
BspPI GGATC 5 cut(s) 30, 43, 199, 544, 610
BspQI GCTCTTC 1 cut(s) 425
BspT107I GGYRCC 1 cut(s) 767
BsrI ACTGG 2 cut(s) 368, 1030
BssECI CCNNGG 5 cut(s) 26, 40, 53, 99, 804
BssMI GATC 6 cut(s) 35, 191, 459, 501, 549, 615
BssT1I CCWWGG 3 cut(s) 40, 53, 99
Bst2UI CCWGG 4 cut(s) 28, 554, 772, 805
Bst4CI ACNGT 6 cut(s) 313, 447, 475, 799, 833, 1115
Bst6I CTCTTC 6 cut(s) 338, 414, 425, 1004, 1029, 1102
BstBAI YACGTR 1 cut(s) 290
BstC8I GCNNGC 2 cut(s) 63, 154
BstDEI CTNAG 7 cut(s) 321, 329, 498, 576, 746, 837, 900
BstF5I GGATG 5 cut(s) 109, 110, 775, 973, 995
BstKTI GATC 6 cut(s) 38, 194, 462, 504, 552, 618
BstMAI GTCTC 2 cut(s) 206, 793
BstMBI GATC 6 cut(s) 35, 191, 459, 501, 549, 615
BstMCI CGRYCG 1 cut(s) 1117
BstMWI GCNNNNNNNGC 1 cut(s) 28
BstNI CCWGG 4 cut(s) 28, 554, 772, 805
BstSCI CCNGG 5 cut(s) 26, 187, 552, 770, 803
BstSLI GKGCMC 1 cut(s) 1113
BstV1I GCAGC 2 cut(s) 52, 980
BstV2I GAAGAC 2 cut(s) 287, 713
BstX2I RGATCY 3 cut(s) 35, 549, 615
BstXI CCANNNNNNTGG 1 cut(s) 560
BstYI RGATCY 3 cut(s) 35, 549, 615
Bsu15I ATCGAT 1 cut(s) 1089
BsuI GTATCC 1 cut(s) 815
BsuRI GGCC 1 cut(s) 294
BsuTUI ATCGAT 1 cut(s) 1089
BtrI CACGTC 1 cut(s) 216
BtsCI GGATG 5 cut(s) 109, 110, 775, 973, 995
BtsI GCAGTG 1 cut(s) 888
BtsIMutI CAGTG 3 cut(s) 309, 888, 897
Cac8I GCNNGC 2 cut(s) 63, 154
CaiI CAGNNNCTG 1 cut(s) 1036
Cfr13I GGNCC 1 cut(s) 1001
ClaI ATCGAT 1 cut(s) 1089
Csp6I GTAC 2 cut(s) 834, 1147
CviAII CATG 2 cut(s) 32, 157
CviQI GTAC 2 cut(s) 834, 1147
DdeI CTNAG 7 cut(s) 321, 329, 498, 576, 746, 837, 900
DpnI GATC 6 cut(s) 37, 193, 461, 503, 551, 617
DpnII GATC 6 cut(s) 35, 191, 459, 501, 549, 615
DraIII CACNNNGTG 2 cut(s) 290, 315
DriI GACNNNNNGTC 1 cut(s) 1053
Eam1104I CTCTTC 6 cut(s) 338, 414, 425, 1004, 1029, 1102
Eam1105I GACNNNNNGTC 1 cut(s) 1053
EarI CTCTTC 6 cut(s) 338, 414, 425, 1004, 1029, 1102
Eco130I CCWWGG 3 cut(s) 40, 53, 99
Eco24I GRGCYC 1 cut(s) 322
Eco47I GGWCC 1 cut(s) 1001
Eco72I CACGTG 1 cut(s) 290
EcoRII CCWGG 4 cut(s) 26, 552, 770, 803
EcoT14I CCWWGG 3 cut(s) 40, 53, 99
EcoT38I GRGCYC 1 cut(s) 322
ErhI CCWWGG 3 cut(s) 40, 53, 99
Esp3I CGTCTC 1 cut(s) 206
FaeI CATG 2 cut(s) 35, 160
FaqI GGGAC 3 cut(s) 531, 580, 1018
FatI CATG 2 cut(s) 31, 156
FbaI TGATCA 1 cut(s) 459
Fnu4HI GCNGC 2 cut(s) 66, 994
FokI GGATG 5 cut(s) 97, 116, 762, 980, 1002
FriOI GRGCYC 1 cut(s) 322
Fsp4HI GCNGC 2 cut(s) 66, 994
FspBI CTAG 1 cut(s) 783
GluI GCNGC 2 cut(s) 66, 994
GsaI CCCAGC 1 cut(s) 876
HaeIII GGCC 1 cut(s) 294
HapII CCGG 1 cut(s) 189
Hin1II CATG 2 cut(s) 35, 160
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HindIII AAGCTT 3 cut(s) 197, 598, 860
HinfI GANTC 5 cut(s) 160, 440, 733, 786, 881
HpaII CCGG 1 cut(s) 189
HphI GGTGA 3 cut(s) 352, 568, 973
Hpy166II GTNNAC 1 cut(s) 129
Hpy188I TCNGA 7 cut(s) 173, 306, 501, 579, 747, 816, 981
Hpy188III TCNNGA 5 cut(s) 181, 505, 637, 1064, 1123
Hpy8I GTNNAC 1 cut(s) 129
HpyCH4III ACNGT 6 cut(s) 313, 447, 475, 799, 833, 1115
HpyCH4IV ACGT 2 cut(s) 215, 289
HpyCH4V TGCA 4 cut(s) 123, 369, 392, 593
HpyF10VI GCNNNNNNNGC 1 cut(s) 28
HpyF3I CTNAG 7 cut(s) 321, 329, 498, 576, 746, 837, 900
HpySE526I ACGT 2 cut(s) 215, 289
Hsp92II CATG 2 cut(s) 35, 160
Ksp22I TGATCA 1 cut(s) 459
Kzo9I GATC 6 cut(s) 35, 191, 459, 501, 549, 615
LguI GCTCTTC 1 cut(s) 425
LmnI GCTCC 1 cut(s) 247
Lsp1109I GCAGC 2 cut(s) 52, 980
LweI GCATC 4 cut(s) 334, 616, 784, 980
MaeI CTAG 1 cut(s) 783
MaeII ACGT 2 cut(s) 215, 289
MaeIII GTNAC 9 cut(s) 71, 143, 226, 667, 697, 712, 882, 895, 1018
MalI GATC 6 cut(s) 37, 193, 461, 503, 551, 617
MboI GATC 6 cut(s) 35, 191, 459, 501, 549, 615
MflI RGATCY 3 cut(s) 35, 549, 615
MhlI GDGCHC 3 cut(s) 24, 322, 1113
MluCI AATT 2 cut(s) 587, 1103
MlyI GAGTC 4 cut(s) 154, 727, 795, 890
MmeI TCCRAC 2 cut(s) 241, 979
MroXI GAANNNNTTC 1 cut(s) 92
MseI TTAA 2 cut(s) 984, 1074
MslI CAYNNNNRTG 2 cut(s) 330, 954
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 5 cut(s) 28, 189, 554, 772, 805
MvaI CCWGG 4 cut(s) 28, 554, 772, 805
MwoI GCNNNNNNNGC 1 cut(s) 28
NciI CCSGG 1 cut(s) 189
NdeII GATC 6 cut(s) 35, 191, 459, 501, 549, 615
NlaIII CATG 2 cut(s) 35, 160
NlaIV GGNNCC 4 cut(s) 37, 243, 769, 1003
NmuCI GTSAC 4 cut(s) 71, 667, 882, 895
OliI CACNNNNGTG 1 cut(s) 954
PciSI GCTCTTC 1 cut(s) 425
PcsI WCGNNNNNNNCGW 1 cut(s) 724
PdmI GAANNNNTTC 1 cut(s) 92
PfeI GAWTC 1 cut(s) 440
PkrI GCNGC 2 cut(s) 67, 995
PleI GAGTC 4 cut(s) 154, 727, 794, 889
PmaCI CACGTG 1 cut(s) 290
PmlI CACGTG 1 cut(s) 290
PpsI GAGTC 4 cut(s) 154, 727, 794, 889
Ppu21I YACGTR 1 cut(s) 290
PsiI TTATAA 1 cut(s) 858
Psp6I CCWGG 4 cut(s) 26, 552, 770, 803
PspCI CACGTG 1 cut(s) 290
PspFI CCCAGC 1 cut(s) 872
PspGI CCWGG 4 cut(s) 26, 552, 770, 803
PspN4I GGNNCC 4 cut(s) 37, 243, 769, 1003
PspPI GGNCC 1 cut(s) 1001
PstNI CAGNNNCTG 1 cut(s) 1036
PsuI RGATCY 3 cut(s) 35, 549, 615
RsaI GTAC 2 cut(s) 835, 1148
RsaNI GTAC 2 cut(s) 834, 1147
RseI CAYNNNNRTG 2 cut(s) 330, 954
SapI GCTCTTC 1 cut(s) 425
SaqAI TTAA 2 cut(s) 984, 1074
SatI GCNGC 2 cut(s) 66, 994
Sau3AI GATC 6 cut(s) 35, 191, 459, 501, 549, 615
Sau96I GGNCC 1 cut(s) 1001
ScaI AGTACT 1 cut(s) 1148
SchI GAGTC 4 cut(s) 154, 727, 795, 890
ScrFI CCNGG 5 cut(s) 28, 189, 554, 772, 805
SduI GDGCHC 3 cut(s) 24, 322, 1113
SfaNI GCATC 4 cut(s) 334, 616, 784, 980
SinI GGWCC 1 cut(s) 1001
SmiMI CAYNNNNRTG 2 cut(s) 330, 954
SmlI CTYRAG 4 cut(s) 1040, 1064, 1079, 1160
SmoI CTYRAG 4 cut(s) 1040, 1064, 1079, 1160
Sse9I AATT 2 cut(s) 587, 1103
SspMI CTAG 1 cut(s) 783
StyD4I CCNGG 5 cut(s) 26, 187, 552, 770, 803
StyI CCWWGG 3 cut(s) 40, 53, 99
TaaI ACNGT 6 cut(s) 313, 447, 475, 799, 833, 1115
TaiI ACGT 2 cut(s) 218, 292
TaqI TCGA 2 cut(s) 180, 1089
TasI AATT 2 cut(s) 587, 1103
TatI WGTACW 1 cut(s) 1146
TfiI GAWTC 1 cut(s) 440
Tru1I TTAA 2 cut(s) 984, 1074
Tru9I TTAA 2 cut(s) 984, 1074
TscAI CASTG 3 cut(s) 316, 895, 904
TseFI GTSAC 4 cut(s) 71, 667, 882, 895
TseI GCWGC 2 cut(s) 65, 993
Tsp45I GTSAC 4 cut(s) 71, 667, 882, 895
TspDTI ATGAA 4 cut(s) 527, 702, 857, 1075
TspGWI ACGGA 1 cut(s) 929
TspRI CASTG 3 cut(s) 316, 895, 904
VpaK11BI GGWCC 1 cut(s) 1001
XapI RAATTY 2 cut(s) 587, 1103
XmnI GAANNNNTTC 1 cut(s) 92
XspI CTAG 1 cut(s) 783
ZrmI AGTACT 1 cut(s) 1148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.