Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001100

Physical Location & Seq

Genomic Coordinates Forward (+)

27306370 .. 27307047

Gene Structure 678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0259900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTTGTCTGGAGAAGGAAAAAAATCGTTCACATCTTGGCGGTCCATCAATAGCGACGGTGATGGTAATAAGTTGATCATCTCTTTTCATCCCGATGATAAACTGAAATTTCTAGTTGAGCGAAGAAAGCAAAGCTCTTGTAATCTAAACGTTTTCAATAACACAGAACACTGTGTTGCGTTCAAGATTAAAACCACTAACCCTAAGAAGTACATTGCAAATCCCAACTCTGGTGTTATACAGGCTCGGCACTCATGTGTCATCAGACTCACCCAGCAAGTCATCGTTAAATATCCTCCAACTGTGGAGTGCAAAGACAAATACCTCATACAGACTACAATAGTGCCTCAAAATTATGCTGCTGATGAGCTTCCGAAAGATACTTTTGCCAAGGAAAGTGGATGGAGAATAGAGGAGTGCAAGCTTCCAGTTGTGTATATCATTCCTCCATATTTGGGTCACCAGGAACATGATATATGGAGCATGCTAAGAGATAGTGTCAAAGATGGCAAAATACCGATAATTGAACCAAGCCCAGACCGTGACCTGACTGTTTGGACCCAAAATGAGCATTTTGGTTTGACAAAGCGTGTCTTGGAGAAATTGAGCCAATGTCAGTGGCTCAAGCTATATATTGTCGACAAGTTCGAAATATATATATATTTAGAGGCTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L3

Protein Analysis

225

Amino Acids

26.07

Weight (kDa)

8.77

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	27 - 125	7.3e-22	MSP (Major sperm protein) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G61580
fragaria_vesca	FvH4_2g13300 FvH4_2g13300 FvH4_2g13300 FvH4_6g25400 FvH4_6g25400 FvH4_6g25400 FvH4_6g25400
malus_domestica	MD04G1044600.v1.1 MD08G1242000.v1.1 MD15G1435700.v1.1
prunus_persica	Prupe.1G579300_v2.0.a1 Prupe.1G579300_v2.0.a1 Prupe.8G036200_v2.0.a1 Prupe.8G036200_v2.0.a1
pyrus_communis	pycom15g38440
rosa_chinensis	RchiOBHm_Chr2g0125851 RchiOBHm_Chr6g0274741 RchiOBHm_Chr7g0220671
rosa_laevigata	RLG00000002211
rosa_multiflora	Rmu_co8485815.1_g000001 Rmu_sc0006216.1_g000001 Rmu_sc0006223.1_g000009 Rmu_sc0013532.1_g000002 Rmu_ssc0000189.1_g000006
rosa_roxburghii	Rroxscaffold_2G00117610 Rroxscaffold_2G00117670 Rroxscaffold_3G00239250 Rroxscaffold_7G00193980
rosa_rugosa	Rorug02G0259500 Rorug02G0259600 Rorug02G0259700 Rorug02G0259800 Rorug02G0259900 Rorug06G0083600 Rorug07G0195800 Rorug07G0195900 Rorug07G0196000.1 Rorug07G0196100
rosa_samantha	Rh2CG307400 Rh6AG199400 Rh6BG203200 Rh6CG203400 Rh7AG336800 Rh7BG327700 Rh7CG354800 Rh7DG333400
rosa_wichuraiana	Rw2G025710 Rw6G017340 Rw7G028730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	639
AciI	CCGC	1 cut(s)	40
AclI	AACGTT	1 cut(s)	150
AcsI	RAATTY	1 cut(s)	107
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	230, 455
AgsI	TTSAA	3 cut(s)	157, 184, 527
AjnI	CCWGG	1 cut(s)	462
AleI	CACNNNNGTG	1 cut(s)	255
AluBI	AGCT	4 cut(s)	135, 370, 424, 628
AluI	AGCT	4 cut(s)	135, 370, 424, 628
ApeKI	GCWGC	1 cut(s)	359
ApoI	RAATTY	1 cut(s)	107
AspS9I	GGNCC	2 cut(s)	42, 558
AsuHPI	GGTGA	3 cut(s)	71, 262, 452
AsuII	TTCGAA	1 cut(s)	648
AvaII	GGWCC	2 cut(s)	42, 558
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	4 cut(s)	53, 56, 396, 500
BciT130I	CCWGG	1 cut(s)	464
BclI	TGATCA	1 cut(s)	75
BfaI	CTAG	1 cut(s)	113
BisI	GCNGC	1 cut(s)	360
BlsI	GCNGC	1 cut(s)	361
Bme1390I	CCNGG	1 cut(s)	464
Bme18I	GGWCC	2 cut(s)	42, 558
BmgT120I	GGNCC	2 cut(s)	42, 558
BmiI	GGNNCC	1 cut(s)	560
BmrFI	CCNGG	1 cut(s)	464
BpmI	CTGGAG	1 cut(s)	30
Bpu14I	TTCGAA	1 cut(s)	648
BpuEI	CTTGAG	1 cut(s)	608
BsaJI	CCNNGG	1 cut(s)	390
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 455
Bse1I	ACTGG	1 cut(s)	428
Bse3DI	GCAATG	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	464
BseDI	CCNNGG	1 cut(s)	390
BseGI	GGATG	2 cut(s)	88, 407
BseLI	CCNNNNNNNGG	2 cut(s)	230, 455
BseMI	GCAATG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	428
BseRI	GAGGAG	1 cut(s)	428
BseXI	GCAGC	1 cut(s)	346
BseYI	CCCAGC	1 cut(s)	273
BslI	CCNNNNNNNGG	2 cut(s)	230, 455
Bsp119I	TTCGAA	1 cut(s)	648
Bsp143I	GATC	1 cut(s)	75
BspACI	CCGC	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	560
BspT104I	TTCGAA	1 cut(s)	648
BsrDI	GCAATG	1 cut(s)	213
BsrI	ACTGG	1 cut(s)	428
BssECI	CCNNGG	1 cut(s)	390
BssMI	GATC	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	390
Bst2UI	CCWGG	1 cut(s)	464
Bst4CI	ACNGT	5 cut(s)	59, 173, 304, 542, 553
BstBI	TTCGAA	1 cut(s)	648
BstC8I	GCNNGC	2 cut(s)	422, 485
BstDEI	CTNAG	2 cut(s)	204, 488
BstEII	GGTNACC	1 cut(s)	458
BstF5I	GGATG	2 cut(s)	88, 407
BstKTI	GATC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstNI	CCWGG	1 cut(s)	464
BstNSI	RCATGY	1 cut(s)	487
BstPI	GGTNACC	1 cut(s)	458
BstSCI	CCNGG	1 cut(s)	462
BstV1I	GCAGC	1 cut(s)	346
BtsCI	GGATG	2 cut(s)	88, 407
BtsIMutI	CAGTG	2 cut(s)	169, 623
Cac8I	GCNNGC	2 cut(s)	422, 485
Cfr13I	GGNCC	2 cut(s)	42, 558
Csp6I	GTAC	1 cut(s)	211
CspCI	CAANNNNNGTGG	4 cut(s)	379, 414, 599, 634
CviAII	CATG	3 cut(s)	255, 470, 484
CviJI	RGCY	9 cut(s)	135, 245, 370, 424, 534, 609, 622, 628, 671
CviKI_1	RGCY	9 cut(s)	135, 245, 370, 424, 534, 609, 622, 628, 671
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	2 cut(s)	204, 488
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	390
Eco47I	GGWCC	2 cut(s)	42, 558
Eco91I	GGTNACC	1 cut(s)	458
EcoO65I	GGTNACC	1 cut(s)	458
EcoRII	CCWGG	1 cut(s)	462
EcoT14I	CCWWGG	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	3 cut(s)	258, 473, 487
FalI	AAGNNNNNCTT	2 cut(s)	578, 610
FatI	CATG	3 cut(s)	254, 469, 483
FbaI	TGATCA	1 cut(s)	75
FblI	GTMKAC	1 cut(s)	639
Fnu4HI	GCNGC	1 cut(s)	360
FokI	GGATG	2 cut(s)	75, 414
Fsp4HI	GCNGC	1 cut(s)	360
FspBI	CTAG	1 cut(s)	113
GluI	GCNGC	1 cut(s)	360
GsaI	CCCAGC	1 cut(s)	277
GsuI	CTGGAG	1 cut(s)	30
Hin1II	CATG	3 cut(s)	258, 473, 487
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	1 cut(s)	267
HphI	GGTGA	3 cut(s)	71, 262, 452
Hpy166II	GTNNAC	2 cut(s)	30, 640
Hpy188I	TCNGA	2 cut(s)	266, 375
Hpy188III	TCNNGA	3 cut(s)	9, 92, 184
Hpy8I	GTNNAC	2 cut(s)	30, 640
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	1 cut(s)	8
HpyCH4III	ACNGT	5 cut(s)	59, 173, 304, 542, 553
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	3 cut(s)	218, 312, 420
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpyF3I	CTNAG	2 cut(s)	204, 488
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	3 cut(s)	258, 473, 487
Ksp22I	TGATCA	1 cut(s)	75
Kzo9I	GATC	1 cut(s)	75
LmnI	GCTCC	1 cut(s)	480
LpnPI	CCDG	8 cut(s)	216, 227, 287, 441, 449, 476, 549, 560
Lsp1109I	GCAGC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	113
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	2 cut(s)	458, 542
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	1 cut(s)	135
MluCI	AATT	4 cut(s)	107, 352, 522, 602
MlyI	GAGTC	1 cut(s)	261
MmeI	TCCRAC	1 cut(s)	323
MnlI	CCTC	6 cut(s)	306, 335, 357, 406, 456, 661
MseI	TTAA	2 cut(s)	189, 288
MslI	CAYNNNNRTG	2 cut(s)	93, 255
MspR9I	CCNGG	1 cut(s)	464
MvaI	CCWGG	1 cut(s)	464
MwoI	GCNNNNNNNGC	1 cut(s)	127
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	3 cut(s)	258, 473, 487
NlaIV	GGNNCC	1 cut(s)	560
NmeAIII	GCCGAG	1 cut(s)	226
NmuCI	GTSAC	2 cut(s)	458, 542
NspI	RCATGY	1 cut(s)	487
NspV	TTCGAA	1 cut(s)	648
OliI	CACNNNNGTG	1 cut(s)	255
PaeI	GCATGC	1 cut(s)	487
PcsI	WCGNNNNNNNCGW	1 cut(s)	645
PkrI	GCNGC	1 cut(s)	361
PleI	GAGTC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	261
Psp1406I	AACGTT	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	462
PspEI	GGTNACC	1 cut(s)	458
PspFI	CCCAGC	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	462
PspN4I	GGNNCC	1 cut(s)	560
PspPI	GGNCC	2 cut(s)	42, 558
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
RseI	CAYNNNNRTG	2 cut(s)	93, 255
SalI	GTCGAC	1 cut(s)	638
SaqAI	TTAA	2 cut(s)	189, 288
SatI	GCNGC	1 cut(s)	360
Sau3AI	GATC	1 cut(s)	75
Sau96I	GGNCC	2 cut(s)	42, 558
SchI	GAGTC	1 cut(s)	261
ScrFI	CCNGG	1 cut(s)	464
SetI	ASST	7 cut(s)	137, 153, 327, 372, 426, 549, 630
SfuI	TTCGAA	1 cut(s)	648
SinI	GGWCC	2 cut(s)	42, 558
SmiMI	CAYNNNNRTG	2 cut(s)	93, 255
SmlI	CTYRAG	1 cut(s)	623
SmoI	CTYRAG	1 cut(s)	623
SphI	GCATGC	1 cut(s)	487
Sse9I	AATT	4 cut(s)	107, 352, 522, 602
SsiI	CCGC	1 cut(s)	40
SspMI	CTAG	1 cut(s)	113
StyD4I	CCNGG	1 cut(s)	462
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	5 cut(s)	59, 173, 304, 542, 553
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	2 cut(s)	639, 648
TasI	AATT	4 cut(s)	107, 352, 522, 602
TatI	WGTACW	1 cut(s)	210
Tru1I	TTAA	2 cut(s)	189, 288
Tru9I	TTAA	2 cut(s)	189, 288
TscAI	CASTG	2 cut(s)	176, 623
TseFI	GTSAC	2 cut(s)	458, 542
TseI	GCWGC	1 cut(s)	359
Tsp45I	GTSAC	2 cut(s)	458, 542
TspDTI	ATGAA	1 cut(s)	77
TspRI	CASTG	2 cut(s)	176, 623
VpaK11BI	GGWCC	2 cut(s)	42, 558
XapI	RAATTY	1 cut(s)	107
XceI	RCATGY	1 cut(s)	487
XmiI	GTMKAC	1 cut(s)	639
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.