Rorug07G0195800

60S ribosomal protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
16865225 .. 16865839
615 bp
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UTR
Exon/CDS
Intron
Rorug07G0195800.1

Sequence Viewer

Length: 270 bp
ATGGATGGGGATGACAACCGTGTCGAGCCACTGTTCAAGCATGTCTTCCTTGGCACCATAGCTTTCTTTTGTCGGGGTACCATGGAGGATGATGAACATGCTAATTGGCTTGCAGCACAATGTGGGTGTCTAGTCTCAGAAGAATGGAGAGAACAAATATTTTTGACAGTAGCAAAGAACTGGTTAGTTCGACCCAAGACATATCAAGATGAATGGGATGATAACCATTTAGTACTGCAAGCTTATGATAGCTTCAGGAATGGAGTTTAA

Protein Analysis

89

Amino Acids

10.45

Weight (kDa)

4.58

Isoelectric Point (pI)

27.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 20
Acc65I GGTACC 1 cut(s) 77
AccB1I GGYRCC 2 cut(s) 53, 77
AcuI CTGAAG 1 cut(s) 238
AdeI CACNNNGTG 1 cut(s) 122
AfaI GTAC 2 cut(s) 79, 234
AgsI TTSAA 1 cut(s) 37
AluBI AGCT 3 cut(s) 62, 242, 252
AluI AGCT 3 cut(s) 62, 242, 252
Alw26I GTCTC 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 113
Asp718I GGTACC 1 cut(s) 77
BanI GGYRCC 2 cut(s) 53, 77
BbsI GAAGAC 1 cut(s) 37
BbvI GCAGC 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 139
BfaI CTAG 1 cut(s) 131
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
BmcAI AGTACT 1 cut(s) 234
BmiI GGNNCC 2 cut(s) 55, 79
BpiI GAAGAC 1 cut(s) 37
BsaJI CCNNGG 2 cut(s) 49, 81
Bse1I ACTGG 1 cut(s) 185
BseDI CCNNGG 2 cut(s) 49, 81
BseGI GGATG 4 cut(s) 10, 16, 94, 223
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 125
BshNI GGYRCC 2 cut(s) 53, 77
BsmAI GTCTC 1 cut(s) 139
Bsp19I CCATGG 1 cut(s) 81
BspCNI CTCAG 1 cut(s) 149
BspLI GGNNCC 2 cut(s) 55, 79
BspT107I GGYRCC 2 cut(s) 53, 77
BsrI ACTGG 1 cut(s) 185
BssECI CCNNGG 2 cut(s) 49, 81
BssT1I CCWWGG 2 cut(s) 49, 81
Bst4CI ACNGT 3 cut(s) 20, 33, 169
BstC8I GCNNGC 2 cut(s) 111, 240
BstDEI CTNAG 1 cut(s) 136
BstDSI CCRYGG 1 cut(s) 81
BstF5I GGATG 4 cut(s) 10, 16, 94, 223
BstMAI GTCTC 1 cut(s) 139
BstNSI RCATGY 2 cut(s) 44, 101
BstV1I GCAGC 1 cut(s) 125
BstV2I GAAGAC 1 cut(s) 37
BtgI CCRYGG 1 cut(s) 81
BtsCI GGATG 4 cut(s) 10, 16, 94, 223
BtsIMutI CAGTG 1 cut(s) 29
Cac8I GCNNGC 2 cut(s) 111, 240
Csp6I GTAC 2 cut(s) 78, 233
CviAII CATG 3 cut(s) 41, 82, 98
CviJI RGCY 5 cut(s) 28, 62, 109, 242, 252
CviKI_1 RGCY 5 cut(s) 28, 62, 109, 242, 252
CviQI GTAC 2 cut(s) 78, 233
DdeI CTNAG 1 cut(s) 136
DraIII CACNNNGTG 1 cut(s) 122
DrdI GACNNNNNNGTC 1 cut(s) 20
DseDI GACNNNNNNGTC 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 49, 81
Eco57I CTGAAG 1 cut(s) 238
EcoT14I CCWWGG 2 cut(s) 49, 81
ErhI CCWWGG 2 cut(s) 49, 81
FaeI CATG 3 cut(s) 44, 85, 101
FaiI YATR 6 cut(s) 42, 59, 83, 99, 202, 246
FalI AAGNNNNNCTT 2 cut(s) 29, 61
FatI CATG 3 cut(s) 40, 81, 97
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 4 cut(s) 17, 23, 101, 230
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 1 cut(s) 131
GluI GCNGC 1 cut(s) 114
Hin1II CATG 3 cut(s) 44, 85, 101
HindIII AAGCTT 1 cut(s) 240
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 2 cut(s) 206, 256
HpyCH4III ACNGT 3 cut(s) 20, 33, 169
HpyCH4V TGCA 2 cut(s) 113, 238
HpyF3I CTNAG 1 cut(s) 136
Hsp92II CATG 3 cut(s) 44, 85, 101
KpnI GGTACC 1 cut(s) 81
LpnPI CCDG 2 cut(s) 166, 241
Lsp1109I GCAGC 1 cut(s) 125
MaeI CTAG 1 cut(s) 131
MboII GAAGA 2 cut(s) 37, 152
MluCI AATT 1 cut(s) 103
MnlI CCTC 1 cut(s) 79
MseI TTAA 1 cut(s) 268
NcoI CCATGG 1 cut(s) 81
NlaIII CATG 3 cut(s) 44, 85, 101
NlaIV GGNNCC 2 cut(s) 55, 79
NspI RCATGY 2 cut(s) 44, 101
PkrI GCNGC 1 cut(s) 115
PspN4I GGNNCC 2 cut(s) 55, 79
RsaI GTAC 2 cut(s) 79, 234
RsaNI GTAC 2 cut(s) 78, 233
SaqAI TTAA 1 cut(s) 268
SatI GCNGC 1 cut(s) 114
ScaI AGTACT 1 cut(s) 234
SetI ASST 3 cut(s) 64, 244, 254
Sse9I AATT 1 cut(s) 103
SspI AATATT 1 cut(s) 159
SspMI CTAG 1 cut(s) 131
StyI CCWWGG 2 cut(s) 49, 81
TaaI ACNGT 3 cut(s) 20, 33, 169
TaqI TCGA 2 cut(s) 24, 190
TasI AATT 1 cut(s) 103
TatI WGTACW 1 cut(s) 232
Tru1I TTAA 1 cut(s) 268
Tru9I TTAA 1 cut(s) 268
TscAI CASTG 1 cut(s) 36
TseI GCWGC 1 cut(s) 113
TspDTI ATGAA 2 cut(s) 108, 225
TspRI CASTG 1 cut(s) 36
XceI RCATGY 2 cut(s) 44, 101
XspI CTAG 1 cut(s) 131
ZrmI AGTACT 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.