FvH4_6g25400

Belongs to the universal ribosomal protein uL3 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
19262930 .. 19265389
2460 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g25400.t4

Sequence Viewer

Length: 1170 bp
ATGTCTCACAGGAAGTTTGAGCACCCCAGACATGGATCCCTTGGATTTCTTCCAAGGAAGCGAGCTGCTCGTCACAGAGGAAAAGTGAAGGCTTTCCCCATGGATGACCCATCGAAGCCCTGCAAGTTGACTGCTTTTCTAGGTTACAAGGCTGGGATGACTCACATTGTCAGGGATGTCGAGAAACCTGGGTCAAAGCTTCACAAGAAGGAGACATGTGAGGCTGTCACTATCATTGAGGCTCCTCCTATGGTTGTTGTTGGCGTTGTGGGCTATGTGAAGACACCACGTGGCCTTCGTTCTTTGAACACAGTGTGGGCTCAGCATCTCAGTGAGGAGGTTAAGAGGAGGTTTTACAAGAACTGGTGCAAGTCCAAGAAGAAGGCCTTTGCAAAATACTCTAAGACGTATGAAACTGATGAAGGAAAGAAGAGTATTGGAGGACAGTTTGAGAAATTGATTAAATATGCAACTGTTATTCGAGTTCTGGCTCACACTCAGATCAGGCGGATGAAGGGATTGAAGCAGAAGAAGGCACATCTAATGGAGATCCAGGTTAATGGTGGCACAATTGCTCAGAAGGTTGAATTTGCAAAAAGTTTTTTTGAGAAGCAAATCCCTATTGATGCTGTCTTCCAGAAAGATGAGATGATTGATATTATTGGTGTGACAAAGGGTAAAGGTTATGAAGGTGTTGTTACTCGTTGGGGTGTGACACGTCTTCCTCGTAAGACTCATAGGGGTCTGCGTAAGGTTGCTTGTATTGGTGCCTGGCATCCTGCTAGAGTCTCATTTACAGTAGCGAGGGCTGGTCAGAATGGGTACCATCACCGTACTGAAATGAACAAGAAAATATACAAGCTTGGAAAGGCTGGACAAGAGTCTCACACTGCTGTCACTGAGTTTGACAGGACTGAGAAAGACATCACTCCAATTGGTGGCTTCCCTCATTATGGTGTGGTGAAAGACGACTATATTCTGATCAAGGGATGCTGTGTCGGACCCAAGAAGAGGGTTGTTACCCTTCGCCAGTCCCTGCTCAAGCAGACATCTCGTCTTGCTCTCGAAGATATCAAGCTCAAGTTCATCGATACCTCCTCAAAGTTCGGGCATGGTCGCTTCCAGACTACACAGGAGAAACAGAAGTACTATGGAAGGCTGAAGGCATAA

Protein Analysis

390

Amino Acids

44.25

Weight (kDa)

10.18

Isoelectric Point (pI)

28.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L3 PF00297 2 - 337 5.5e-173 Ribosomal protein L3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 822
AccB1I GGYRCC 2 cut(s) 767, 822
AccB7I CCANNNNNTGG 1 cut(s) 938
AciI CCGC 1 cut(s) 508
AclWI GGATC 3 cut(s) 30, 43, 544
AcsI RAATTY 1 cut(s) 587
AcvI CACGTG 1 cut(s) 290
AdeI CACNNNGTG 2 cut(s) 290, 315
AfaI GTAC 3 cut(s) 824, 835, 1148
AfiI CCNNNNNNNGG 4 cut(s) 32, 938, 953, 1011
AflIII ACRYGT 2 cut(s) 215, 716
AgsI TTSAA 3 cut(s) 307, 523, 587
AhdI GACNNNNNGTC 1 cut(s) 1053
AjiI CACGTC 1 cut(s) 719
AjnI CCWGG 3 cut(s) 187, 552, 770
AluBI AGCT 4 cut(s) 65, 199, 862, 1078
AluI AGCT 4 cut(s) 65, 199, 862, 1078
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 4 cut(s) 9, 206, 793, 888
AlwI GGATC 3 cut(s) 30, 43, 544
AlwNI CAGNNNCTG 1 cut(s) 1036
AoxI GGCC 2 cut(s) 292, 384
ApeKI GCWGC 1 cut(s) 65
ApoI RAATTY 1 cut(s) 587
Asp700I GAANNNNTTC 1 cut(s) 92
Asp718I GGTACC 1 cut(s) 822
AspS9I GGNCC 1 cut(s) 1001
AsuHPI GGTGA 2 cut(s) 821, 973
AvaII GGWCC 1 cut(s) 1001
BamHI GGATCC 1 cut(s) 35
BanI GGYRCC 2 cut(s) 767, 822
BanII GRGCYC 1 cut(s) 322
BbrPI CACGTG 1 cut(s) 290
BbsI GAAGAC 3 cut(s) 287, 625, 713
Bbv12I GWGCWC 1 cut(s) 24
BbvI GCAGC 1 cut(s) 52
BccI CCATC 2 cut(s) 118, 834
BcgI CGANNNNNNTGC 2 cut(s) 1034, 1068
BciT130I CCWGG 3 cut(s) 189, 554, 772
BclI TGATCA 1 cut(s) 981
BcoDI GTCTC 4 cut(s) 9, 206, 793, 888
BfaI CTAG 2 cut(s) 140, 783
BisI GCNGC 1 cut(s) 66
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 67
BmcAI AGTACT 1 cut(s) 1148
Bme1390I CCNGG 3 cut(s) 189, 554, 772
Bme18I GGWCC 1 cut(s) 1001
BmeRI GACNNNNNGTC 1 cut(s) 1053
BmgBI CACGTC 1 cut(s) 719
BmgT120I GGNCC 1 cut(s) 1001
BmiI GGNNCC 5 cut(s) 37, 243, 769, 824, 1003
BmrFI CCNGG 3 cut(s) 189, 554, 772
BmsI GCATC 4 cut(s) 334, 616, 784, 980
BoxI GACNNNNGTC 1 cut(s) 880
BpiI GAAGAC 3 cut(s) 287, 625, 713
Bpu1102I GCTNAGC 1 cut(s) 321
BpuEI CTTGAG 2 cut(s) 1025, 1064
Bsa29I ATCGAT 1 cut(s) 1089
BsaAI YACGTR 1 cut(s) 290
BsaJI CCNNGG 4 cut(s) 40, 53, 99, 188
Bsc4I CCNNNNNNNGG 4 cut(s) 32, 938, 953, 1011
Bse1I ACTGG 2 cut(s) 368, 1030
BseBI CCWGG 3 cut(s) 189, 554, 772
BseCI ATCGAT 1 cut(s) 1089
BseDI CCNNGG 4 cut(s) 40, 53, 99, 188
BseGI GGATG 6 cut(s) 109, 162, 181, 516, 775, 995
BseLI CCNNNNNNNGG 4 cut(s) 32, 938, 953, 1011
BseMII CTCAG 6 cut(s) 335, 343, 512, 590, 891, 906
BseNI ACTGG 2 cut(s) 368, 1030
BseRI GAGGAG 4 cut(s) 234, 350, 361, 1087
BseXI GCAGC 1 cut(s) 52
BseYI CCCAGC 1 cut(s) 152
BshFI GGCC 2 cut(s) 294, 386
BshNI GGYRCC 2 cut(s) 767, 822
BshVI ATCGAT 1 cut(s) 1089
BsiHKAI GWGCWC 1 cut(s) 24
BslFI GGGAC 1 cut(s) 1018
BslI CCNNNNNNNGG 4 cut(s) 32, 938, 953, 1011
BsmAI GTCTC 4 cut(s) 9, 206, 793, 888
BsmFI GGGAC 1 cut(s) 1018
BsnI GGCC 2 cut(s) 294, 386
Bsp1286I GDGCHC 2 cut(s) 24, 322
Bsp143I GATC 4 cut(s) 35, 501, 549, 981
Bsp1720I GCTNAGC 1 cut(s) 321
Bsp19I CCATGG 1 cut(s) 99
BspACI CCGC 1 cut(s) 508
BspANI GGCC 2 cut(s) 294, 386
BspCNI CTCAG 6 cut(s) 334, 342, 511, 589, 892, 907
BspDI ATCGAT 1 cut(s) 1089
BspLI GGNNCC 5 cut(s) 37, 243, 769, 824, 1003
BspPI GGATC 3 cut(s) 30, 43, 544
BspT107I GGYRCC 2 cut(s) 767, 822
BsrI ACTGG 2 cut(s) 368, 1030
BssECI CCNNGG 4 cut(s) 40, 53, 99, 188
BssMI GATC 4 cut(s) 35, 501, 549, 981
BssT1I CCWWGG 3 cut(s) 40, 53, 99
Bst2UI CCWGG 3 cut(s) 189, 554, 772
Bst4CI ACNGT 5 cut(s) 313, 447, 475, 799, 833
Bst6I CTCTTC 2 cut(s) 425, 1004
BstBAI YACGTR 1 cut(s) 290
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 7 cut(s) 321, 329, 402, 498, 576, 900, 915
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 6 cut(s) 109, 162, 181, 516, 775, 995
BstKTI GATC 4 cut(s) 38, 504, 552, 984
BstMAI GTCTC 4 cut(s) 9, 206, 793, 888
BstMBI GATC 4 cut(s) 35, 501, 549, 981
BstMWI GCNNNNNNNGC 1 cut(s) 270
BstNI CCWGG 3 cut(s) 189, 554, 772
BstNSI RCATGY 1 cut(s) 219
BstPAI GACNNNNGTC 1 cut(s) 880
BstSCI CCNGG 3 cut(s) 187, 552, 770
BstV1I GCAGC 1 cut(s) 52
BstV2I GAAGAC 3 cut(s) 287, 625, 713
BstX2I RGATCY 2 cut(s) 35, 549
BstXI CCANNNNNNTGG 1 cut(s) 560
BstYI RGATCY 2 cut(s) 35, 549
Bsu15I ATCGAT 1 cut(s) 1089
BsuRI GGCC 2 cut(s) 294, 386
BsuTUI ATCGAT 1 cut(s) 1089
BtgI CCRYGG 1 cut(s) 99
BtrI CACGTC 1 cut(s) 719
BtsCI GGATG 6 cut(s) 109, 162, 181, 516, 775, 995
BtsI GCAGTG 1 cut(s) 888
BtsIMutI CAGTG 4 cut(s) 318, 337, 888, 897
Cac8I GCNNGC 1 cut(s) 63
CaiI CAGNNNCTG 1 cut(s) 1036
Cfr13I GGNCC 1 cut(s) 1001
ClaI ATCGAT 1 cut(s) 1089
Csp6I GTAC 3 cut(s) 823, 834, 1147
CviAII CATG 4 cut(s) 32, 100, 216, 1112
CviQI GTAC 3 cut(s) 823, 834, 1147
DdeI CTNAG 7 cut(s) 321, 329, 402, 498, 576, 900, 915
DpnI GATC 4 cut(s) 37, 503, 551, 983
DpnII GATC 4 cut(s) 35, 501, 549, 981
DraIII CACNNNGTG 2 cut(s) 290, 315
DriI GACNNNNNGTC 1 cut(s) 1053
Eam1104I CTCTTC 2 cut(s) 425, 1004
Eam1105I GACNNNNNGTC 1 cut(s) 1053
EarI CTCTTC 2 cut(s) 425, 1004
EciI GGCGGA 1 cut(s) 523
Eco130I CCWWGG 3 cut(s) 40, 53, 99
Eco147I AGGCCT 1 cut(s) 386
Eco24I GRGCYC 1 cut(s) 322
Eco32I GATATC 1 cut(s) 1072
Eco47I GGWCC 1 cut(s) 1001
Eco72I CACGTG 1 cut(s) 290
EcoRII CCWGG 3 cut(s) 187, 552, 770
EcoRV GATATC 1 cut(s) 1072
EcoT14I CCWWGG 3 cut(s) 40, 53, 99
EcoT38I GRGCYC 1 cut(s) 322
ErhI CCWWGG 3 cut(s) 40, 53, 99
FaeI CATG 4 cut(s) 35, 103, 219, 1115
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FaqI GGGAC 1 cut(s) 1018
FatI CATG 4 cut(s) 31, 99, 215, 1111
FbaI TGATCA 1 cut(s) 981
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 6 cut(s) 116, 169, 188, 523, 762, 1002
FriOI GRGCYC 1 cut(s) 322
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 2 cut(s) 140, 783
GluI GCNGC 1 cut(s) 66
GsaI CCCAGC 1 cut(s) 156
HaeIII GGCC 2 cut(s) 294, 386
Hin1II CATG 4 cut(s) 35, 103, 219, 1115
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HindIII AAGCTT 2 cut(s) 197, 860
HinfI GANTC 4 cut(s) 160, 733, 786, 881
HphI GGTGA 2 cut(s) 821, 973
Hpy166II GTNNAC 1 cut(s) 129
Hpy188I TCNGA 5 cut(s) 501, 579, 816, 981, 1001
Hpy188III TCNNGA 4 cut(s) 181, 637, 1064, 1123
Hpy8I GTNNAC 1 cut(s) 129
HpyCH4III ACNGT 5 cut(s) 313, 447, 475, 799, 833
HpyCH4IV ACGT 3 cut(s) 289, 407, 718
HpyCH4V TGCA 5 cut(s) 123, 369, 392, 470, 593
HpyF10VI GCNNNNNNNGC 1 cut(s) 270
HpyF3I CTNAG 7 cut(s) 321, 329, 402, 498, 576, 900, 915
HpySE526I ACGT 3 cut(s) 289, 407, 718
Hsp92II CATG 4 cut(s) 35, 103, 219, 1115
KpnI GGTACC 1 cut(s) 826
Ksp22I TGATCA 1 cut(s) 981
Kzo9I GATC 4 cut(s) 35, 501, 549, 981
LmnI GCTCC 1 cut(s) 247
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 4 cut(s) 334, 616, 784, 980
MaeI CTAG 2 cut(s) 140, 783
MaeII ACGT 3 cut(s) 289, 407, 718
MaeIII GTNAC 8 cut(s) 71, 143, 226, 667, 697, 712, 895, 1018
MalI GATC 4 cut(s) 37, 503, 551, 983
MboI GATC 4 cut(s) 35, 501, 549, 981
MboII GAAGA 9 cut(s) 41, 292, 391, 442, 541, 625, 713, 1021, 1079
MfeI CAATTG 2 cut(s) 570, 933
MflI RGATCY 2 cut(s) 35, 549
MhlI GDGCHC 2 cut(s) 24, 322
MluCI AATT 4 cut(s) 455, 570, 587, 933
MlyI GAGTC 4 cut(s) 154, 727, 795, 890
MmeI TCCRAC 1 cut(s) 979
MroXI GAANNNNTTC 1 cut(s) 92
MseI TTAA 3 cut(s) 342, 462, 558
MslI CAYNNNNRTG 2 cut(s) 330, 954
MspR9I CCNGG 3 cut(s) 189, 554, 772
MunI CAATTG 2 cut(s) 570, 933
MvaI CCWGG 3 cut(s) 189, 554, 772
MwoI GCNNNNNNNGC 1 cut(s) 270
NcoI CCATGG 1 cut(s) 99
NdeII GATC 4 cut(s) 35, 501, 549, 981
NlaIII CATG 4 cut(s) 35, 103, 219, 1115
NlaIV GGNNCC 5 cut(s) 37, 243, 769, 824, 1003
NmuCI GTSAC 5 cut(s) 71, 226, 667, 712, 895
NspI RCATGY 1 cut(s) 219
PceI AGGCCT 1 cut(s) 386
PciI ACATGT 1 cut(s) 215
PcsI WCGNNNNNNNCGW 2 cut(s) 295, 724
PdmI GAANNNNTTC 1 cut(s) 92
PflMI CCANNNNNTGG 1 cut(s) 938
PkrI GCNGC 1 cut(s) 67
PleI GAGTC 4 cut(s) 154, 727, 794, 889
PmaCI CACGTG 1 cut(s) 290
PmlI CACGTG 1 cut(s) 290
PpsI GAGTC 4 cut(s) 154, 727, 794, 889
Ppu21I YACGTR 1 cut(s) 290
PscI ACATGT 1 cut(s) 215
PshAI GACNNNNGTC 1 cut(s) 880
Psp6I CCWGG 3 cut(s) 187, 552, 770
PspCI CACGTG 1 cut(s) 290
PspFI CCCAGC 1 cut(s) 152
PspGI CCWGG 3 cut(s) 187, 552, 770
PspN4I GGNNCC 5 cut(s) 37, 243, 769, 824, 1003
PspPI GGNCC 1 cut(s) 1001
PstNI CAGNNNCTG 1 cut(s) 1036
PsuI RGATCY 2 cut(s) 35, 549
RsaI GTAC 3 cut(s) 824, 835, 1148
RsaNI GTAC 3 cut(s) 823, 834, 1147
RseI CAYNNNNRTG 2 cut(s) 330, 954
SaqAI TTAA 3 cut(s) 342, 462, 558
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 4 cut(s) 35, 501, 549, 981
Sau96I GGNCC 1 cut(s) 1001
ScaI AGTACT 1 cut(s) 1148
SchI GAGTC 4 cut(s) 154, 727, 795, 890
ScrFI CCNGG 3 cut(s) 189, 554, 772
SduI GDGCHC 2 cut(s) 24, 322
SfaNI GCATC 4 cut(s) 334, 616, 784, 980
SinI GGWCC 1 cut(s) 1001
SmiMI CAYNNNNRTG 2 cut(s) 330, 954
SmlI CTYRAG 2 cut(s) 1040, 1079
SmoI CTYRAG 2 cut(s) 1040, 1079
Sse9I AATT 4 cut(s) 455, 570, 587, 933
SseBI AGGCCT 1 cut(s) 386
SsiI CCGC 1 cut(s) 508
SspMI CTAG 2 cut(s) 140, 783
StuI AGGCCT 1 cut(s) 386
StyD4I CCNGG 3 cut(s) 187, 552, 770
StyI CCWWGG 3 cut(s) 40, 53, 99
TaaI ACNGT 5 cut(s) 313, 447, 475, 799, 833
TaiI ACGT 3 cut(s) 292, 410, 721
TaqI TCGA 5 cut(s) 113, 180, 481, 1065, 1089
TasI AATT 4 cut(s) 455, 570, 587, 933
TatI WGTACW 1 cut(s) 1146
Tru1I TTAA 3 cut(s) 342, 462, 558
Tru9I TTAA 3 cut(s) 342, 462, 558
TscAI CASTG 4 cut(s) 318, 337, 895, 904
TseFI GTSAC 5 cut(s) 71, 226, 667, 712, 895
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 5 cut(s) 71, 226, 667, 712, 895
TspDTI ATGAA 6 cut(s) 426, 435, 527, 702, 857, 1075
TspRI CASTG 4 cut(s) 318, 337, 895, 904
Van91I CCANNNNNTGG 1 cut(s) 938
VpaK11BI GGWCC 1 cut(s) 1001
XapI RAATTY 1 cut(s) 587
XceI RCATGY 1 cut(s) 219
XcmI CCANNNNNNNNNTGG 1 cut(s) 560
XmnI GAANNNNTTC 1 cut(s) 92
XspI CTAG 2 cut(s) 140, 783
ZrmI AGTACT 1 cut(s) 1148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.