Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001100

Physical Location & Seq

Genomic Coordinates Reverse (-)

34043099 .. 34045160

Gene Structure 2062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG203400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGTCTCACAGGAAGTTTGAGCACCCCAGGCATGGATCCCTTGGATTTCTTCCAAGGAAGCGAGCTGCTCGTCACAGAGGAAAAGAGCTGCACAAGAAGGAGACATGTGAGGCTGTCACTATCATTGAGGCTCCTCCAATGGTCGTTGTTGGTGTTGTGGGTTATGTGAAGACACCCCGCGGCCTTCGTTCTTTGAACACAGTGTGGGCTCAGCATCTTAGTGAGGAGGTTAAGAGGAGGTTTTACAAGAACTGGTGCAAGTCCAAGAAGAAGGCTTTCGCAAAGTACTCCAAGACCTATGAAACTGACGAAGGAAAGAAGAATATTGAAGGGCAGTTTGAGAAACTGATTAAATATGCTACTGTTATTCGAGTTTTGGCTCACACTCAGATCAGGAAGATGAAGGGTTTGAAGCAGAAGAAAGCACATCTCATGGAGATCCAGGTGAACGGTGGCACAATTGCTCAAAAGGTTGAATTTGCAAAAAGCTTCTTTGAGAAGCAAATCCCTATTGATGCCGTCTTCCAGAAAGATGAAATGATTGACATCATTGGTGTGACAAAGGGTAAGGGTTATGAAGGTGTTGTTACTCGTTGGGGTGTCACCCGGCTTCCCCGTAAGACCCATAGGGGTCTGCGTAAGGTAGCTTGTATTGGTGCATGGCATCCTGCCAGAGTTTCATTTACAGTTGCCAGGGCTGGTCAAAATGGATACCATCACCGTACTGAAATGAACAAGAAAATTTACAAGCTTGGAAAGGCCGGACAAGAGTCACACACTGCTGTCACTGAGTTTGACAGGACTGAGAAGGACATCACTCCAATTGGTGGCTTCCCTCATTATGGTGTGGTGAAAGATGACTACATTCTGATCAAGGGATGCTGTGTTGGACCCAAGAAGAGGGTTGTTACCCTTCGCCAGTCCCTGCTCAAGCAGACCTCCCGTCTTGCTCTTGAGGATATCAAGCTCAAGTTCATCGATACCTCCTCAAAGTTCGGGCATGGTCGCTTCCAGACTACACAGGAGAAACAGAAGTACTATGGACGACTCAAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L3

Protein Analysis

352

Amino Acids

40.3

Weight (kDa)

10.16

Isoelectric Point (pI)

31.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L3	PF00297	1 - 28	4e-08	Ribosomal protein L3
Ribosomal_L3	PF00297	28 - 333	1.5e-155	Ribosomal protein L3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G61580
fragaria_vesca	FvH4_2g13300 FvH4_2g13300 FvH4_2g13300 FvH4_6g25400 FvH4_6g25400 FvH4_6g25400 FvH4_6g25400
malus_domestica	MD04G1044600.v1.1 MD08G1242000.v1.1 MD15G1435700.v1.1
prunus_persica	Prupe.1G579300_v2.0.a1 Prupe.1G579300_v2.0.a1 Prupe.8G036200_v2.0.a1 Prupe.8G036200_v2.0.a1
pyrus_communis	pycom15g38440
rosa_chinensis	RchiOBHm_Chr2g0125851 RchiOBHm_Chr6g0274741 RchiOBHm_Chr7g0220671
rosa_laevigata	RLG00000002211
rosa_multiflora	Rmu_co8485815.1_g000001 Rmu_sc0006216.1_g000001 Rmu_sc0006223.1_g000009 Rmu_sc0013532.1_g000002 Rmu_ssc0000189.1_g000006
rosa_roxburghii	Rroxscaffold_2G00117610 Rroxscaffold_2G00117670 Rroxscaffold_3G00239250 Rroxscaffold_7G00193980
rosa_rugosa	Rorug02G0259500 Rorug02G0259600 Rorug02G0259700 Rorug02G0259800 Rorug02G0259900 Rorug06G0083600 Rorug07G0195800 Rorug07G0195900 Rorug07G0196000.1 Rorug07G0196100
rosa_samantha	Rh2CG307400 Rh6AG199400 Rh6BG203200 Rh6CG203400 Rh7AG336800 Rh7BG327700 Rh7CG354800 Rh7DG333400
rosa_wichuraiana	Rw2G025710 Rw6G017340 Rw7G028730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	827
AccII	CGCG	1 cut(s)	180
AciI	CCGC	2 cut(s)	178, 180
AclWI	GGATC	3 cut(s)	30, 43, 433
AcsI	RAATTY	2 cut(s)	476, 741
AdeI	CACNNNGTG	1 cut(s)	204
AfaI	GTAC	3 cut(s)	287, 724, 1037
AfiI	CCNNNNNNNGG	4 cut(s)	32, 827, 842, 900
AflIII	ACRYGT	1 cut(s)	104
AgsI	TTSAA	4 cut(s)	196, 329, 412, 476
AhdI	GACNNNNNGTC	1 cut(s)	942
AjnI	CCWGG	3 cut(s)	26, 441, 692
AluBI	AGCT	6 cut(s)	65, 88, 489, 647, 751, 967
AluI	AGCT	6 cut(s)	65, 88, 489, 647, 751, 967
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	2 cut(s)	9, 95
AlwI	GGATC	3 cut(s)	30, 43, 433
AlwNI	CAGNNNCTG	1 cut(s)	925
AoxI	GGCC	2 cut(s)	181, 759
ApeKI	GCWGC	2 cut(s)	65, 88
ApoI	RAATTY	2 cut(s)	476, 741
Asp700I	GAANNNNTTC	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	890
AsuC2I	CCSGG	1 cut(s)	607
AsuHPI	GGTGA	4 cut(s)	457, 595, 710, 862
AvaII	GGWCC	1 cut(s)	890
BamHI	GGATCC	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	211
BbsI	GAAGAC	2 cut(s)	176, 514
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	2 cut(s)	52, 75
BccI	CCATC	1 cut(s)	723
BceAI	ACGGC	1 cut(s)	503
BciT130I	CCWGG	3 cut(s)	28, 443, 694
BciVI	GTATCC	1 cut(s)	704
BclI	TGATCA	1 cut(s)	870
BcnI	CCSGG	1 cut(s)	607
BcoDI	GTCTC	2 cut(s)	9, 95
BfuI	GTATCC	1 cut(s)	704
BisI	GCNGC	3 cut(s)	66, 89, 181
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	3 cut(s)	67, 90, 182
BmcAI	AGTACT	2 cut(s)	287, 1037
Bme1390I	CCNGG	4 cut(s)	28, 443, 607, 694
Bme18I	GGWCC	1 cut(s)	890
BmeRI	GACNNNNNGTC	1 cut(s)	942
BmgT120I	GGNCC	1 cut(s)	890
BmiI	GGNNCC	3 cut(s)	37, 132, 892
BmrFI	CCNGG	4 cut(s)	28, 443, 607, 694
BmsI	GCATC	4 cut(s)	223, 505, 673, 869
BoxI	GACNNNNGTC	1 cut(s)	769
BpiI	GAAGAC	2 cut(s)	176, 514
Bpu1102I	GCTNAGC	1 cut(s)	210
BpuEI	CTTGAG	4 cut(s)	914, 953, 974, 1034
BpuMI	CCSGG	1 cut(s)	607
Bsa29I	ATCGAT	1 cut(s)	978
BsaBI	GATNNNNATC	1 cut(s)	545
BsaJI	CCNNGG	5 cut(s)	26, 40, 53, 178, 693
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 827, 842, 900
Bse1I	ACTGG	2 cut(s)	257, 919
Bse8I	GATNNNNATC	1 cut(s)	545
BseBI	CCWGG	3 cut(s)	28, 443, 694
BseCI	ATCGAT	1 cut(s)	978
BseDI	CCNNGG	5 cut(s)	26, 40, 53, 178, 693
BseGI	GGATG	2 cut(s)	664, 884
BseJI	GATNNNNATC	1 cut(s)	545
BseLI	CCNNNNNNNGG	4 cut(s)	32, 827, 842, 900
BseMII	CTCAG	4 cut(s)	224, 401, 780, 795
BseNI	ACTGG	2 cut(s)	257, 919
BseRI	GAGGAG	4 cut(s)	123, 239, 250, 976
BseXI	GCAGC	2 cut(s)	52, 75
BsgI	GTGCAG	1 cut(s)	74
Bsh1236I	CGCG	1 cut(s)	180
BshFI	GGCC	2 cut(s)	183, 761
BshVI	ATCGAT	1 cut(s)	978
BsiHKAI	GWGCWC	1 cut(s)	24
BsiSI	CCGG	2 cut(s)	607, 762
BslFI	GGGAC	1 cut(s)	907
BslI	CCNNNNNNNGG	4 cut(s)	32, 827, 842, 900
BsmAI	GTCTC	2 cut(s)	9, 95
BsmFI	GGGAC	1 cut(s)	907
BsnI	GGCC	2 cut(s)	183, 761
Bsp1286I	GDGCHC	2 cut(s)	24, 211
Bsp143I	GATC	4 cut(s)	35, 390, 438, 870
Bsp1720I	GCTNAGC	1 cut(s)	210
BspACI	CCGC	2 cut(s)	178, 180
BspANI	GGCC	2 cut(s)	183, 761
BspCNI	CTCAG	4 cut(s)	223, 400, 781, 796
BspDI	ATCGAT	1 cut(s)	978
BspFNI	CGCG	1 cut(s)	180
BspLI	GGNNCC	3 cut(s)	37, 132, 892
BspPI	GGATC	3 cut(s)	30, 43, 433
BsrI	ACTGG	2 cut(s)	257, 919
BssECI	CCNNGG	5 cut(s)	26, 40, 53, 178, 693
BssMI	GATC	4 cut(s)	35, 390, 438, 870
BssT1I	CCWWGG	2 cut(s)	40, 53
Bst2UI	CCWGG	3 cut(s)	28, 443, 694
Bst4CI	ACNGT	5 cut(s)	202, 364, 452, 688, 722
Bst6I	CTCTTC	1 cut(s)	893
BstC8I	GCNNGC	1 cut(s)	63
BstDEI	CTNAG	5 cut(s)	210, 218, 387, 789, 804
BstDSI	CCRYGG	1 cut(s)	178
BstF5I	GGATG	2 cut(s)	664, 884
BstFNI	CGCG	1 cut(s)	180
BstKTI	GATC	4 cut(s)	38, 393, 441, 873
BstMAI	GTCTC	2 cut(s)	9, 95
BstMBI	GATC	4 cut(s)	35, 390, 438, 870
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstNI	CCWGG	3 cut(s)	28, 443, 694
BstNSI	RCATGY	1 cut(s)	108
BstPAI	GACNNNNGTC	1 cut(s)	769
BstSCI	CCNGG	4 cut(s)	26, 441, 605, 692
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	52, 75
BstV2I	GAAGAC	2 cut(s)	176, 514
BstX2I	RGATCY	2 cut(s)	35, 438
BstYI	RGATCY	2 cut(s)	35, 438
Bsu15I	ATCGAT	1 cut(s)	978
BsuI	GTATCC	1 cut(s)	704
BsuRI	GGCC	2 cut(s)	183, 761
BsuTUI	ATCGAT	1 cut(s)	978
BtgI	CCRYGG	1 cut(s)	178
BtsCI	GGATG	2 cut(s)	664, 884
BtsI	GCAGTG	1 cut(s)	777
BtsIMutI	CAGTG	3 cut(s)	207, 777, 786
Cac8I	GCNNGC	1 cut(s)	63
CaiI	CAGNNNCTG	1 cut(s)	925
Cfr13I	GGNCC	1 cut(s)	890
Cfr42I	CCGCGG	1 cut(s)	181
ClaI	ATCGAT	1 cut(s)	978
Csp6I	GTAC	3 cut(s)	286, 723, 1036
CviAII	CATG	5 cut(s)	32, 105, 433, 660, 1001
CviQI	GTAC	3 cut(s)	286, 723, 1036
DdeI	CTNAG	5 cut(s)	210, 218, 387, 789, 804
DpnI	GATC	4 cut(s)	37, 392, 440, 872
DpnII	GATC	4 cut(s)	35, 390, 438, 870
DraIII	CACNNNGTG	1 cut(s)	204
DriI	GACNNNNNGTC	1 cut(s)	942
Eam1104I	CTCTTC	1 cut(s)	893
Eam1105I	GACNNNNNGTC	1 cut(s)	942
EarI	CTCTTC	1 cut(s)	893
Eco130I	CCWWGG	2 cut(s)	40, 53
Eco24I	GRGCYC	1 cut(s)	211
Eco32I	GATATC	1 cut(s)	961
Eco47I	GGWCC	1 cut(s)	890
EcoRII	CCWGG	3 cut(s)	26, 441, 692
EcoRV	GATATC	1 cut(s)	961
EcoT14I	CCWWGG	2 cut(s)	40, 53
EcoT38I	GRGCYC	1 cut(s)	211
ErhI	CCWWGG	2 cut(s)	40, 53
FaeI	CATG	5 cut(s)	35, 108, 436, 663, 1004
FaqI	GGGAC	1 cut(s)	907
FatI	CATG	5 cut(s)	31, 104, 432, 659, 1000
FauI	CCCGC	1 cut(s)	185
FbaI	TGATCA	1 cut(s)	870
Fnu4HI	GCNGC	3 cut(s)	66, 89, 181
FokI	GGATG	2 cut(s)	651, 891
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	3 cut(s)	66, 89, 181
GluI	GCNGC	3 cut(s)	66, 89, 181
HaeIII	GGCC	2 cut(s)	183, 761
HapII	CCGG	2 cut(s)	607, 762
Hin1II	CATG	5 cut(s)	35, 108, 436, 663, 1004
HindIII	AAGCTT	2 cut(s)	487, 749
HinfI	GANTC	2 cut(s)	770, 1047
HpaII	CCGG	2 cut(s)	607, 762
HphI	GGTGA	4 cut(s)	457, 595, 710, 862
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	2 cut(s)	390, 870
Hpy188III	TCNNGA	4 cut(s)	394, 526, 953, 1012
Hpy8I	GTNNAC	1 cut(s)	448
HpyAV	CCTTC	9 cut(s)	91, 194, 265, 305, 323, 397, 572, 802, 923
HpyCH4III	ACNGT	5 cut(s)	202, 364, 452, 688, 722
HpyCH4V	TGCA	4 cut(s)	91, 258, 482, 659
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
HpyF3I	CTNAG	5 cut(s)	210, 218, 387, 789, 804
Hsp92II	CATG	5 cut(s)	35, 108, 436, 663, 1004
Ksp22I	TGATCA	1 cut(s)	870
KspI	CCGCGG	1 cut(s)	181
Kzo9I	GATC	4 cut(s)	35, 390, 438, 870
LmnI	GCTCC	1 cut(s)	136
Lsp1109I	GCAGC	2 cut(s)	52, 75
LweI	GCATC	4 cut(s)	223, 505, 673, 869
MaeIII	GTNAC	8 cut(s)	71, 115, 556, 586, 601, 771, 784, 907
MalI	GATC	4 cut(s)	37, 392, 440, 872
MboI	GATC	4 cut(s)	35, 390, 438, 870
MboII	GAAGA	8 cut(s)	41, 181, 280, 331, 409, 430, 514, 910
MfeI	CAATTG	2 cut(s)	459, 822
MflI	RGATCY	2 cut(s)	35, 438
MhlI	GDGCHC	2 cut(s)	24, 211
MluCI	AATT	4 cut(s)	459, 476, 741, 822
MlyI	GAGTC	2 cut(s)	779, 1041
MmeI	TCCRAC	1 cut(s)	868
MroXI	GAANNNNTTC	1 cut(s)	275
MseI	TTAA	2 cut(s)	231, 351
MslI	CAYNNNNRTG	3 cut(s)	219, 554, 843
MspA1I	CMGCKG	1 cut(s)	180
MspI	CCGG	2 cut(s)	607, 762
MspR9I	CCNGG	4 cut(s)	28, 443, 607, 694
MunI	CAATTG	2 cut(s)	459, 822
MvaI	CCWGG	3 cut(s)	28, 443, 694
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	1 cut(s)	28
NciI	CCSGG	1 cut(s)	607
NdeII	GATC	4 cut(s)	35, 390, 438, 870
NlaIII	CATG	5 cut(s)	35, 108, 436, 663, 1004
NlaIV	GGNNCC	3 cut(s)	37, 132, 892
NmuCI	GTSAC	6 cut(s)	71, 115, 556, 601, 771, 784
NspI	RCATGY	1 cut(s)	108
PciI	ACATGT	1 cut(s)	104
PdmI	GAANNNNTTC	1 cut(s)	275
PflMI	CCANNNNNTGG	1 cut(s)	827
PkrI	GCNGC	3 cut(s)	67, 90, 182
PleI	GAGTC	2 cut(s)	778, 1041
PpsI	GAGTC	2 cut(s)	778, 1041
PscI	ACATGT	1 cut(s)	104
PshAI	GACNNNNGTC	1 cut(s)	769
Psp6I	CCWGG	3 cut(s)	26, 441, 692
PspGI	CCWGG	3 cut(s)	26, 441, 692
PspN4I	GGNNCC	3 cut(s)	37, 132, 892
PspPI	GGNCC	1 cut(s)	890
PstNI	CAGNNNCTG	1 cut(s)	925
PsuI	RGATCY	2 cut(s)	35, 438
RsaI	GTAC	3 cut(s)	287, 724, 1037
RsaNI	GTAC	3 cut(s)	286, 723, 1036
RseI	CAYNNNNRTG	3 cut(s)	219, 554, 843
SacII	CCGCGG	1 cut(s)	181
SaqAI	TTAA	2 cut(s)	231, 351
SatI	GCNGC	3 cut(s)	66, 89, 181
Sau3AI	GATC	4 cut(s)	35, 390, 438, 870
Sau96I	GGNCC	1 cut(s)	890
ScaI	AGTACT	2 cut(s)	287, 1037
SchI	GAGTC	2 cut(s)	779, 1041
ScrFI	CCNGG	4 cut(s)	28, 443, 607, 694
SduI	GDGCHC	2 cut(s)	24, 211
SfaNI	GCATC	4 cut(s)	223, 505, 673, 869
Sfr303I	CCGCGG	1 cut(s)	181
SgrBI	CCGCGG	1 cut(s)	181
SinI	GGWCC	1 cut(s)	890
SmiMI	CAYNNNNRTG	3 cut(s)	219, 554, 843
SmlI	CTYRAG	4 cut(s)	929, 953, 968, 1049
SmoI	CTYRAG	4 cut(s)	929, 953, 968, 1049
Sse9I	AATT	4 cut(s)	459, 476, 741, 822
SsiI	CCGC	2 cut(s)	178, 180
SspI	AATATT	1 cut(s)	325
StyD4I	CCNGG	4 cut(s)	26, 441, 605, 692
StyI	CCWWGG	2 cut(s)	40, 53
TaaI	ACNGT	5 cut(s)	202, 364, 452, 688, 722
TaqI	TCGA	2 cut(s)	370, 978
TasI	AATT	4 cut(s)	459, 476, 741, 822
TatI	WGTACW	2 cut(s)	285, 1035
TauI	GCSGC	1 cut(s)	183
Tru1I	TTAA	2 cut(s)	231, 351
Tru9I	TTAA	2 cut(s)	231, 351
TscAI	CASTG	3 cut(s)	207, 784, 793
TseFI	GTSAC	6 cut(s)	71, 115, 556, 601, 771, 784
TseI	GCWGC	2 cut(s)	65, 88
Tsp45I	GTSAC	6 cut(s)	71, 115, 556, 601, 771, 784
TspDTI	ATGAA	7 cut(s)	315, 416, 549, 591, 669, 746, 964
TspRI	CASTG	3 cut(s)	207, 784, 793
Van91I	CCANNNNNTGG	1 cut(s)	827
VpaK11BI	GGWCC	1 cut(s)	890
XapI	RAATTY	2 cut(s)	476, 741
XceI	RCATGY	1 cut(s)	108
XcmI	CCANNNNNNNNNTGG	1 cut(s)	449
XmnI	GAANNNNTTC	1 cut(s)	275
ZrmI	AGTACT	2 cut(s)	287, 1037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.