Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001100

Physical Location & Seq

Genomic Coordinates Reverse (-)

16874614 .. 16875833

Gene Structure 1220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0195900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCTGATGCTCCCTCTGCTCATTCGGCTACAATGCATCCCTTATACCGCCACGTAGCAGTGATTGGTGCCGGTGGCGGTGCCCGCGGTTTGGTGGTGGCACGTGGGCTCCGGCGGGAAGATCACAGCGTAGTAGTGTTTGAGCGAGGTGACCAAATGGGTGCTACGTGGGTGTACACAGGGGCGGAGCCACATGGGGACCCAGTGGGTCCTAAATTCTCGCTCCGCCACTGGGTGTACACCACGGAAGTGGAGTCTGACCCAATTGGTCTCCACCCAAACAGAACCATAGTGCACTCGAGCATGTACCAGTCTCTCAGGACCAACCCTCCCAGAGAGATCATGGGGTTCCGGGACTACCCATTTGCGGCCAAGGAACAAGATGAAGAGAGAGACCCGAGAAGGTTTCAGGGTCACAGAGAGGTGTTGAAGTACTTGAATGACTTCTCCGGCGAGTTTAAGATTTGTGAGATGGTGGTGTTCGTGCGTTTGGTGGAGGGTGGCATGTGGATGGTTAAGTCCAAGAGCAAGACAAGTGATGAGGGTTTCGAAGAGATTTATGATGCTGTGGTTGTTTGTTGTGGGCATTATACTCAGCCTCGTGTTGCAGAAATTTCTGCACTACTAGAATTATGCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L3

Protein Analysis

213

Amino Acids

23.94

Weight (kDa)

6.06

Isoelectric Point (pI)

35.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMO-like	PF00743	100 - 202	1.2e-07	Flavin-binding monooxygenase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G61580
fragaria_vesca	FvH4_2g13300 FvH4_2g13300 FvH4_2g13300 FvH4_6g25400 FvH4_6g25400 FvH4_6g25400 FvH4_6g25400
malus_domestica	MD04G1044600.v1.1 MD08G1242000.v1.1 MD15G1435700.v1.1
prunus_persica	Prupe.1G579300_v2.0.a1 Prupe.1G579300_v2.0.a1 Prupe.8G036200_v2.0.a1 Prupe.8G036200_v2.0.a1
pyrus_communis	pycom15g38440
rosa_chinensis	RchiOBHm_Chr2g0125851 RchiOBHm_Chr6g0274741 RchiOBHm_Chr7g0220671
rosa_laevigata	RLG00000002211
rosa_multiflora	Rmu_co8485815.1_g000001 Rmu_sc0006216.1_g000001 Rmu_sc0006223.1_g000009 Rmu_sc0013532.1_g000002 Rmu_ssc0000189.1_g000006
rosa_roxburghii	Rroxscaffold_2G00117610 Rroxscaffold_2G00117670 Rroxscaffold_3G00239250 Rroxscaffold_7G00193980
rosa_rugosa	Rorug02G0259500 Rorug02G0259600 Rorug02G0259700 Rorug02G0259800 Rorug02G0259900 Rorug06G0083600 Rorug07G0195800 Rorug07G0195900 Rorug07G0196000.1 Rorug07G0196100
rosa_samantha	Rh2CG307400 Rh6AG199400 Rh6BG203200 Rh6CG203400 Rh7AG336800 Rh7BG327700 Rh7CG354800 Rh7DG333400
rosa_wichuraiana	Rw2G025710 Rw6G017340 Rw7G028730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	68, 80
AccII	CGCG	1 cut(s)	87
AciI	CCGC	8 cut(s)	49, 78, 85, 87, 115, 185, 226, 368
AcoI	YGGCCR	1 cut(s)	369
AcsI	RAATTY	2 cut(s)	215, 612
AcvI	CACGTG	1 cut(s)	104
AdeI	CACNNNGTG	1 cut(s)	235
AfaI	GTAC	4 cut(s)	176, 239, 308, 434
AfiI	CCNNNNNNNGG	3 cut(s)	91, 232, 367
AgsI	TTSAA	2 cut(s)	430, 439
AleI	CACNNNNGTG	1 cut(s)	248
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	3 cut(s)	275, 318, 387
Alw44I	GTGCAC	1 cut(s)	293
Ama87I	CYCGRG	2 cut(s)	298, 397
AoxI	GGCC	1 cut(s)	369
ApaLI	GTGCAC	1 cut(s)	293
ApoI	RAATTY	2 cut(s)	215, 612
ArsI	GACNNNNNNTTYG	2 cut(s)	347, 379
Asp700I	GAANNNNTTC	1 cut(s)	443
AspS9I	GGNCC	3 cut(s)	199, 209, 321
AsuC2I	CCSGG	1 cut(s)	353
AsuHPI	GGTGA	1 cut(s)	161
AsuII	TTCGAA	1 cut(s)	549
AvaI	CYCGRG	2 cut(s)	298, 397
AvaII	GGWCC	3 cut(s)	199, 209, 321
BaeGI	GKGCMC	2 cut(s)	85, 297
BanI	GGYRCC	2 cut(s)	68, 80
BanII	GRGCYC	1 cut(s)	111
BauI	CACGAG	1 cut(s)	600
BbrPI	CACGTG	1 cut(s)	104
Bbv12I	GWGCWC	1 cut(s)	297
BccI	CCATC	2 cut(s)	466, 505
BcnI	CCSGG	1 cut(s)	353
BcoDI	GTCTC	3 cut(s)	275, 318, 387
BfaI	CTAG	1 cut(s)	626
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
BmcAI	AGTACT	1 cut(s)	434
Bme1390I	CCNGG	1 cut(s)	353
Bme18I	GGWCC	3 cut(s)	199, 209, 321
BmeT110I	CYCGRG	2 cut(s)	298, 397
BmgT120I	GGNCC	3 cut(s)	199, 209, 321
BmiI	GGNNCC	8 cut(s)	70, 82, 110, 189, 200, 201, 210, 350
BmrFI	CCNGG	1 cut(s)	353
BmrI	ACTGGG	2 cut(s)	197, 241
BmsI	GCATC	2 cut(s)	46, 553
BmuI	ACTGGG	2 cut(s)	197, 241
Bpu14I	TTCGAA	1 cut(s)	549
BpuMI	CCSGG	1 cut(s)	353
BsaAI	YACGTR	3 cut(s)	55, 104, 168
BsaI	GGTCTC	2 cut(s)	275, 387
BsaJI	CCNNGG	3 cut(s)	85, 243, 372
BsaXI	ACNNNNNCTCC	4 cut(s)	93, 123, 313, 343
Bsc4I	CCNNNNNNNGG	3 cut(s)	91, 232, 367
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	3 cut(s)	203, 236, 310
BseDI	CCNNGG	3 cut(s)	85, 243, 372
BseGI	GGATG	2 cut(s)	37, 516
BseLI	CCNNNNNNNGG	3 cut(s)	91, 232, 367
BseMII	CTCAG	2 cut(s)	331, 608
BseNI	ACTGG	3 cut(s)	203, 236, 310
BseSI	GKGCMC	2 cut(s)	85, 297
BsgI	GTGCAG	1 cut(s)	603
Bsh1236I	CGCG	1 cut(s)	87
BshFI	GGCC	1 cut(s)	371
BshNI	GGYRCC	2 cut(s)	68, 80
BsiHKAI	GWGCWC	1 cut(s)	297
BsiHKCI	CYCGRG	2 cut(s)	298, 397
BsiSI	CCGG	4 cut(s)	72, 112, 352, 450
BslFI	GGGAC	2 cut(s)	212, 368
BslI	CCNNNNNNNGG	3 cut(s)	91, 232, 367
BsmAI	GTCTC	3 cut(s)	275, 318, 387
BsmFI	GGGAC	2 cut(s)	212, 368
BsnI	GGCC	1 cut(s)	371
Bso31I	GGTCTC	2 cut(s)	275, 387
BsoBI	CYCGRG	2 cut(s)	298, 397
Bsp119I	TTCGAA	1 cut(s)	549
Bsp1286I	GDGCHC	3 cut(s)	85, 111, 297
Bsp1407I	TGTACA	2 cut(s)	174, 237
Bsp143I	GATC	2 cut(s)	121, 339
BspACI	CCGC	8 cut(s)	49, 78, 85, 87, 115, 185, 226, 368
BspANI	GGCC	1 cut(s)	371
BspCNI	CTCAG	2 cut(s)	330, 607
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	8 cut(s)	70, 82, 110, 189, 200, 201, 210, 350
BspT104I	TTCGAA	1 cut(s)	549
BspT107I	GGYRCC	2 cut(s)	68, 80
BspTNI	GGTCTC	2 cut(s)	275, 387
BsrFI	RCCGGY	1 cut(s)	71
BsrGI	TGTACA	2 cut(s)	174, 237
BsrI	ACTGG	3 cut(s)	203, 236, 310
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	3 cut(s)	85, 243, 372
BssMI	GATC	2 cut(s)	121, 339
BssSI	CACGAG	1 cut(s)	600
BssT1I	CCWWGG	1 cut(s)	372
Bst2BI	CACGAG	1 cut(s)	600
Bst6I	CTCTTC	2 cut(s)	381, 546
BstAUI	TGTACA	2 cut(s)	174, 237
BstBAI	YACGTR	3 cut(s)	55, 104, 168
BstBI	TTCGAA	1 cut(s)	549
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	2 cut(s)	317, 594
BstDSI	CCRYGG	2 cut(s)	85, 243
BstEII	GGTNACC	1 cut(s)	149
BstF5I	GGATG	2 cut(s)	37, 516
BstFNI	CGCG	1 cut(s)	87
BstKTI	GATC	2 cut(s)	124, 342
BstMAI	GTCTC	3 cut(s)	275, 318, 387
BstMBI	GATC	2 cut(s)	121, 339
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 26, 84
BstNSI	RCATGY	2 cut(s)	307, 508
BstPI	GGTNACC	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	351
BstSLI	GKGCMC	2 cut(s)	85, 297
BstUI	CGCG	1 cut(s)	87
BstXI	CCANNNNNNTGG	1 cut(s)	250
BsuRI	GGCC	1 cut(s)	371
BtgI	CCRYGG	2 cut(s)	85, 243
BtsCI	GGATG	2 cut(s)	37, 516
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	3 cut(s)	66, 210, 229
Cac8I	GCNNGC	1 cut(s)	85
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	3 cut(s)	199, 209, 321
Cfr42I	CCGCGG	1 cut(s)	88
Csp6I	GTAC	4 cut(s)	175, 238, 307, 433
CviAII	CATG	4 cut(s)	194, 304, 343, 505
CviJI	RGCY	6 cut(s)	5, 29, 109, 190, 371, 598
CviKI_1	RGCY	6 cut(s)	5, 29, 109, 190, 371, 598
CviQI	GTAC	4 cut(s)	175, 238, 307, 433
DdeI	CTNAG	2 cut(s)	317, 594
DpnI	GATC	2 cut(s)	123, 341
DpnII	GATC	2 cut(s)	121, 339
DraIII	CACNNNGTG	1 cut(s)	235
EaeI	YGGCCR	1 cut(s)	369
Eam1104I	CTCTTC	2 cut(s)	381, 546
EarI	CTCTTC	2 cut(s)	381, 546
EciI	GGCGGA	2 cut(s)	200, 215
Eco130I	CCWWGG	1 cut(s)	372
Eco24I	GRGCYC	1 cut(s)	111
Eco31I	GGTCTC	2 cut(s)	275, 387
Eco47I	GGWCC	3 cut(s)	199, 209, 321
Eco72I	CACGTG	1 cut(s)	104
Eco88I	CYCGRG	2 cut(s)	298, 397
Eco91I	GGTNACC	1 cut(s)	149
EcoO109I	RGGNCCY	2 cut(s)	199, 209
EcoO65I	GGTNACC	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	372
EcoT22I	ATGCAT	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	4 cut(s)	197, 307, 346, 508
FaqI	GGGAC	2 cut(s)	212, 368
FatI	CATG	4 cut(s)	193, 303, 342, 504
FauI	CCCGC	2 cut(s)	92, 108
Fnu4HI	GCNGC	1 cut(s)	369
FokI	GGATG	2 cut(s)	24, 523
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	369
FspBI	CTAG	1 cut(s)	626
GluI	GCNGC	1 cut(s)	369
HaeIII	GGCC	1 cut(s)	371
HapII	CCGG	4 cut(s)	72, 112, 352, 450
Hin1II	CATG	4 cut(s)	197, 307, 346, 508
HinfI	GANTC	1 cut(s)	254
HpaII	CCGG	4 cut(s)	72, 112, 352, 450
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	5 cut(s)	175, 177, 238, 240, 295
Hpy188I	TCNGA	1 cut(s)	259
Hpy188III	TCNNGA	1 cut(s)	319
Hpy8I	GTNNAC	5 cut(s)	175, 177, 238, 240, 295
HpyAV	CCTTC	1 cut(s)	396
HpyCH4IV	ACGT	3 cut(s)	54, 103, 167
HpyCH4V	TGCA	4 cut(s)	37, 295, 608, 620
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 26, 84
HpyF3I	CTNAG	2 cut(s)	317, 594
HpySE526I	ACGT	3 cut(s)	54, 103, 167
Hsp92II	CATG	4 cut(s)	197, 307, 346, 508
KflI	GGGWCCC	1 cut(s)	199
KspI	CCGCGG	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	121, 339
LmnI	GCTCC	4 cut(s)	16, 114, 187, 228
LweI	GCATC	2 cut(s)	46, 553
MaeI	CTAG	1 cut(s)	626
MaeII	ACGT	3 cut(s)	54, 103, 167
MaeIII	GTNAC	2 cut(s)	149, 413
MalI	GATC	2 cut(s)	123, 341
MboI	GATC	2 cut(s)	121, 339
MboII	GAAGA	3 cut(s)	131, 398, 563
MfeI	CAATTG	1 cut(s)	264
MhlI	GDGCHC	3 cut(s)	85, 111, 297
MluCI	AATT	4 cut(s)	215, 264, 612, 629
MlyI	GAGTC	1 cut(s)	263
MnlI	CCTC	7 cut(s)	25, 140, 339, 415, 490, 535, 609
Mph1103I	ATGCAT	1 cut(s)	39
MroXI	GAANNNNTTC	1 cut(s)	443
MseI	TTAA	2 cut(s)	459, 516
MslI	CAYNNNNRTG	2 cut(s)	248, 509
MspA1I	CMGCKG	1 cut(s)	87
MspI	CCGG	4 cut(s)	72, 112, 352, 450
MspR9I	CCNGG	1 cut(s)	353
MunI	CAATTG	1 cut(s)	264
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	3 cut(s)	17, 26, 84
NciI	CCSGG	1 cut(s)	353
NdeII	GATC	2 cut(s)	121, 339
NlaIII	CATG	4 cut(s)	197, 307, 346, 508
NlaIV	GGNNCC	8 cut(s)	70, 82, 110, 189, 200, 201, 210, 350
NmuCI	GTSAC	2 cut(s)	149, 413
NsiI	ATGCAT	1 cut(s)	39
NspI	RCATGY	2 cut(s)	307, 508
NspV	TTCGAA	1 cut(s)	549
OliI	CACNNNNGTG	1 cut(s)	248
PaeR7I	CTCGAG	1 cut(s)	298
PdmI	GAANNNNTTC	1 cut(s)	443
PfoI	TCCNGGA	1 cut(s)	351
PkrI	GCNGC	1 cut(s)	370
PleI	GAGTC	1 cut(s)	262
PmaCI	CACGTG	1 cut(s)	104
PmlI	CACGTG	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	262
Ppu21I	YACGTR	3 cut(s)	55, 104, 168
PpuMI	RGGWCCY	2 cut(s)	199, 209
Psp5II	RGGWCCY	2 cut(s)	199, 209
PspCI	CACGTG	1 cut(s)	104
PspEI	GGTNACC	1 cut(s)	149
PspN4I	GGNNCC	8 cut(s)	70, 82, 110, 189, 200, 201, 210, 350
PspPI	GGNCC	3 cut(s)	199, 209, 321
PspPPI	RGGWCCY	2 cut(s)	199, 209
PspXI	VCTCGAGB	1 cut(s)	298
RsaI	GTAC	4 cut(s)	176, 239, 308, 434
RsaNI	GTAC	4 cut(s)	175, 238, 307, 433
RseI	CAYNNNNRTG	2 cut(s)	248, 509
SacII	CCGCGG	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	459, 516
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	2 cut(s)	121, 339
Sau96I	GGNCC	3 cut(s)	199, 209, 321
ScaI	AGTACT	1 cut(s)	434
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	1 cut(s)	353
SduI	GDGCHC	3 cut(s)	85, 111, 297
SetI	ASST	6 cut(s)	57, 106, 151, 170, 407, 426
SfaNI	GCATC	2 cut(s)	46, 553
Sfr274I	CTCGAG	1 cut(s)	298
Sfr303I	CCGCGG	1 cut(s)	88
SfuI	TTCGAA	1 cut(s)	549
SgrBI	CCGCGG	1 cut(s)	88
SinI	GGWCC	3 cut(s)	199, 209, 321
SlaI	CTCGAG	1 cut(s)	298
SmiMI	CAYNNNNRTG	2 cut(s)	248, 509
SmlI	CTYRAG	1 cut(s)	298
SmoI	CTYRAG	1 cut(s)	298
Sse9I	AATT	4 cut(s)	215, 264, 612, 629
SsiI	CCGC	8 cut(s)	49, 78, 85, 87, 115, 185, 226, 368
SspMI	CTAG	1 cut(s)	626
StyD4I	CCNGG	1 cut(s)	351
StyI	CCWWGG	1 cut(s)	372
TaiI	ACGT	3 cut(s)	57, 106, 170
TaqI	TCGA	2 cut(s)	299, 549
TasI	AATT	4 cut(s)	215, 264, 612, 629
TatI	WGTACW	3 cut(s)	174, 237, 432
TauI	GCSGC	1 cut(s)	371
Tru1I	TTAA	2 cut(s)	459, 516
Tru9I	TTAA	2 cut(s)	459, 516
TscAI	CASTG	3 cut(s)	66, 210, 236
TseFI	GTSAC	2 cut(s)	149, 413
Tsp45I	GTSAC	2 cut(s)	149, 413
TspDTI	ATGAA	1 cut(s)	399
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	3 cut(s)	66, 210, 236
VneI	GTGCAC	1 cut(s)	293
VpaK11BI	GGWCC	3 cut(s)	199, 209, 321
XapI	RAATTY	2 cut(s)	215, 612
XceI	RCATGY	2 cut(s)	307, 508
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340
XhoI	CTCGAG	1 cut(s)	298
XmnI	GAANNNNTTC	1 cut(s)	443
XspI	CTAG	1 cut(s)	626
ZrmI	AGTACT	1 cut(s)	434
Zsp2I	ATGCAT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.