Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006223.1

Orthogroup ID

OG0001100

Physical Location & Seq

Genomic Coordinates Forward (+)

40316 .. 41621

Gene Structure 1306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006223.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

atggtcgttgttggtgttgtgggttatgtgaagacaccccgcggccttcgttctttgaacacagtgtgggctcagcatctcagtgaggaggttaagaggaggttttacaagaactggtgcaagtccaagaagaaggcttttgcaaagtactccaagacctatgaaactgacgaaggaaagaagaatattgaagggcagtttgagaaactgattaaatatgctactgttattcgagttttggctcacactcagatcaggaagatgaagggtttgaagcagaagaaagcacatctcatggagatccaggtgaatggtggcacaattgctcaaaaggttgaatttgcaaaaagcttctttgagaagcaaatccctattgatgctgtcttccagaaagatgagatgattgatatcattggtgtaacaaagggtaaaggttatgaaggtgttgttactcgttggggtgtcacccggcttcctcgtaagacccataggggtctgcgtaaggtcgcttgtattggtgcatggcatcctgccagagtttcatttacagttgccagggctggtcaaaatggataccatcaccgtactgaaatgaacaagaaaatttacaagcttggaaaggctggacaagagtcacacactgctgtcactgagtttgacaggactgagaaggacatcactccaattggtggcttcccccattatggtgtggtgaaagatgactacattctgatcaagggatgctgtgttggacccaagaagagggttgttacccttcgccagtccctgctcaagcagacctcccgtcttgctcttgaggatatcaagctcaagttcatcgatacctcctcaaagttcgggcatggtcgcttccagactacacaggagaaacagaagtactatggacgactcaaggcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L3

Protein Analysis

306

Amino Acids

34.98

Weight (kDa)

10.1

Isoelectric Point (pI)

29.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G43170 AT1G61580
fragaria_vesca	FvH4_2g13300 FvH4_2g13300 FvH4_2g13300 FvH4_6g25400 FvH4_6g25400 FvH4_6g25400 FvH4_6g25400
malus_domestica	MD04G1044600.v1.1 MD08G1242000.v1.1 MD15G1435700.v1.1
prunus_persica	Prupe.1G579300_v2.0.a1 Prupe.1G579300_v2.0.a1 Prupe.8G036200_v2.0.a1 Prupe.8G036200_v2.0.a1
pyrus_communis	pycom15g38440
rosa_chinensis	RchiOBHm_Chr2g0125851 RchiOBHm_Chr6g0274741 RchiOBHm_Chr7g0220671
rosa_laevigata	RLG00000002211
rosa_multiflora	Rmu_co8485815.1_g000001 Rmu_sc0006216.1_g000001 Rmu_sc0006223.1_g000009 Rmu_sc0013532.1_g000002 Rmu_ssc0000189.1_g000006
rosa_roxburghii	Rroxscaffold_2G00117610 Rroxscaffold_2G00117670 Rroxscaffold_3G00239250 Rroxscaffold_7G00193980
rosa_rugosa	Rorug02G0259500 Rorug02G0259600 Rorug02G0259700 Rorug02G0259800 Rorug02G0259900 Rorug06G0083600 Rorug07G0195800 Rorug07G0195900 Rorug07G0196000.1 Rorug07G0196100
rosa_samantha	Rh2CG307400 Rh6AG199400 Rh6BG203200 Rh6CG203400 Rh7AG336800 Rh7BG327700 Rh7CG354800 Rh7DG333400
rosa_wichuraiana	Rw2G025710 Rw6G017340 Rw7G028730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	689
AccII	CGCG	1 cut(s)	42
AciI	CCGC	2 cut(s)	40, 42
AclWI	GGATC	1 cut(s)	295
AcsI	RAATTY	2 cut(s)	338, 603
AdeI	CACNNNGTG	1 cut(s)	66
AfaI	GTAC	3 cut(s)	149, 586, 899
AfiI	CCNNNNNNNGG	3 cut(s)	689, 704, 762
AgsI	TTSAA	4 cut(s)	58, 191, 274, 338
AhdI	GACNNNNNGTC	1 cut(s)	804
AjnI	CCWGG	2 cut(s)	303, 554
AluBI	AGCT	3 cut(s)	351, 613, 829
AluI	AGCT	3 cut(s)	351, 613, 829
AlwI	GGATC	1 cut(s)	295
AlwNI	CAGNNNCTG	1 cut(s)	787
AoxI	GGCC	1 cut(s)	43
ApoI	RAATTY	2 cut(s)	338, 603
AspS9I	GGNCC	1 cut(s)	752
AsuC2I	CCSGG	1 cut(s)	469
AsuHPI	GGTGA	4 cut(s)	319, 457, 572, 724
AvaII	GGWCC	1 cut(s)	752
BanII	GRGCYC	1 cut(s)	73
BbsI	GAAGAC	2 cut(s)	38, 376
BccI	CCATC	1 cut(s)	585
BciT130I	CCWGG	2 cut(s)	305, 556
BciVI	GTATCC	1 cut(s)	566
BclI	TGATCA	1 cut(s)	732
BcnI	CCSGG	1 cut(s)	469
BfuI	GTATCC	1 cut(s)	566
BisI	GCNGC	1 cut(s)	43
BlpI	GCTNAGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	44
BmcAI	AGTACT	2 cut(s)	149, 899
Bme1390I	CCNGG	3 cut(s)	305, 469, 556
Bme18I	GGWCC	1 cut(s)	752
BmeRI	GACNNNNNGTC	1 cut(s)	804
BmgT120I	GGNCC	1 cut(s)	752
BmiI	GGNNCC	1 cut(s)	754
BmrFI	CCNGG	3 cut(s)	305, 469, 556
BmsI	GCATC	4 cut(s)	85, 367, 535, 731
BoxI	GACNNNNGTC	1 cut(s)	631
BpiI	GAAGAC	2 cut(s)	38, 376
Bpu1102I	GCTNAGC	1 cut(s)	72
BpuEI	CTTGAG	4 cut(s)	776, 815, 836, 896
BpuMI	CCSGG	1 cut(s)	469
Bsa29I	ATCGAT	1 cut(s)	840
BsaBI	GATNNNNATC	1 cut(s)	407
BsaJI	CCNNGG	2 cut(s)	40, 555
Bsc4I	CCNNNNNNNGG	3 cut(s)	689, 704, 762
Bse1I	ACTGG	2 cut(s)	119, 781
Bse8I	GATNNNNATC	1 cut(s)	407
BseBI	CCWGG	2 cut(s)	305, 556
BseCI	ATCGAT	1 cut(s)	840
BseDI	CCNNGG	2 cut(s)	40, 555
BseGI	GGATG	2 cut(s)	526, 746
BseJI	GATNNNNATC	1 cut(s)	407
BseLI	CCNNNNNNNGG	3 cut(s)	689, 704, 762
BseMII	CTCAG	5 cut(s)	86, 94, 263, 642, 657
BseNI	ACTGG	2 cut(s)	119, 781
BseRI	GAGGAG	3 cut(s)	101, 112, 838
Bsh1236I	CGCG	1 cut(s)	42
BshFI	GGCC	1 cut(s)	45
BshVI	ATCGAT	1 cut(s)	840
BsiSI	CCGG	1 cut(s)	469
BslFI	GGGAC	1 cut(s)	769
BslI	CCNNNNNNNGG	3 cut(s)	689, 704, 762
BsmFI	GGGAC	1 cut(s)	769
BsnI	GGCC	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp143I	GATC	3 cut(s)	252, 300, 732
Bsp1720I	GCTNAGC	1 cut(s)	72
BspACI	CCGC	2 cut(s)	40, 42
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	5 cut(s)	85, 93, 262, 643, 658
BspDI	ATCGAT	1 cut(s)	840
BspFNI	CGCG	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	754
BspPI	GGATC	1 cut(s)	295
BsrI	ACTGG	2 cut(s)	119, 781
BssECI	CCNNGG	2 cut(s)	40, 555
BssMI	GATC	3 cut(s)	252, 300, 732
Bst2UI	CCWGG	2 cut(s)	305, 556
Bst4CI	ACNGT	4 cut(s)	64, 226, 550, 584
Bst6I	CTCTTC	1 cut(s)	755
BstDEI	CTNAG	5 cut(s)	72, 80, 249, 651, 666
BstDSI	CCRYGG	1 cut(s)	40
BstF5I	GGATG	2 cut(s)	526, 746
BstFNI	CGCG	1 cut(s)	42
BstKTI	GATC	3 cut(s)	255, 303, 735
BstMBI	GATC	3 cut(s)	252, 300, 732
BstNI	CCWGG	2 cut(s)	305, 556
BstPAI	GACNNNNGTC	1 cut(s)	631
BstSCI	CCNGG	3 cut(s)	303, 467, 554
BstUI	CGCG	1 cut(s)	42
BstV2I	GAAGAC	2 cut(s)	38, 376
BstX2I	RGATCY	1 cut(s)	300
BstXI	CCANNNNNNTGG	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	300
Bsu15I	ATCGAT	1 cut(s)	840
BsuI	GTATCC	1 cut(s)	566
BsuRI	GGCC	1 cut(s)	45
BsuTUI	ATCGAT	1 cut(s)	840
BtgI	CCRYGG	1 cut(s)	40
BtsCI	GGATG	2 cut(s)	526, 746
BtsI	GCAGTG	1 cut(s)	639
BtsIMutI	CAGTG	4 cut(s)	69, 88, 639, 648
CaiI	CAGNNNCTG	1 cut(s)	787
Cfr13I	GGNCC	1 cut(s)	752
Cfr42I	CCGCGG	1 cut(s)	43
ClaI	ATCGAT	1 cut(s)	840
Csp6I	GTAC	3 cut(s)	148, 585, 898
CviAII	CATG	3 cut(s)	295, 522, 863
CviQI	GTAC	3 cut(s)	148, 585, 898
DdeI	CTNAG	5 cut(s)	72, 80, 249, 651, 666
DpnI	GATC	3 cut(s)	254, 302, 734
DpnII	GATC	3 cut(s)	252, 300, 732
DraIII	CACNNNGTG	1 cut(s)	66
DriI	GACNNNNNGTC	1 cut(s)	804
Eam1104I	CTCTTC	1 cut(s)	755
Eam1105I	GACNNNNNGTC	1 cut(s)	804
EarI	CTCTTC	1 cut(s)	755
Eco24I	GRGCYC	1 cut(s)	73
Eco32I	GATATC	2 cut(s)	409, 823
Eco47I	GGWCC	1 cut(s)	752
EcoRII	CCWGG	2 cut(s)	303, 554
EcoRV	GATATC	2 cut(s)	409, 823
EcoT38I	GRGCYC	1 cut(s)	73
FaeI	CATG	3 cut(s)	298, 525, 866
FaqI	GGGAC	1 cut(s)	769
FatI	CATG	3 cut(s)	294, 521, 862
FauI	CCCGC	1 cut(s)	47
FbaI	TGATCA	1 cut(s)	732
Fnu4HI	GCNGC	1 cut(s)	43
FokI	GGATG	2 cut(s)	513, 753
FriOI	GRGCYC	1 cut(s)	73
Fsp4HI	GCNGC	1 cut(s)	43
GluI	GCNGC	1 cut(s)	43
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	1 cut(s)	469
Hin1II	CATG	3 cut(s)	298, 525, 866
HindIII	AAGCTT	2 cut(s)	349, 611
HinfI	GANTC	2 cut(s)	632, 909
HpaII	CCGG	1 cut(s)	469
HphI	GGTGA	4 cut(s)	319, 457, 572, 724
Hpy188I	TCNGA	2 cut(s)	252, 732
Hpy188III	TCNNGA	4 cut(s)	256, 388, 815, 874
HpyAV	CCTTC	8 cut(s)	56, 127, 167, 185, 259, 434, 664, 785
HpyCH4III	ACNGT	4 cut(s)	64, 226, 550, 584
HpyCH4V	TGCA	4 cut(s)	120, 143, 344, 521
HpyF3I	CTNAG	5 cut(s)	72, 80, 249, 651, 666
Hsp92II	CATG	3 cut(s)	298, 525, 866
Ksp22I	TGATCA	1 cut(s)	732
KspI	CCGCGG	1 cut(s)	43
Kzo9I	GATC	3 cut(s)	252, 300, 732
LweI	GCATC	4 cut(s)	85, 367, 535, 731
MaeIII	GTNAC	6 cut(s)	418, 448, 463, 633, 646, 769
MalI	GATC	3 cut(s)	254, 302, 734
MboI	GATC	3 cut(s)	252, 300, 732
MboII	GAAGA	7 cut(s)	43, 142, 193, 271, 292, 376, 772
MfeI	CAATTG	2 cut(s)	321, 684
MflI	RGATCY	1 cut(s)	300
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	4 cut(s)	321, 338, 603, 684
MlyI	GAGTC	2 cut(s)	641, 903
MmeI	TCCRAC	1 cut(s)	730
MseI	TTAA	2 cut(s)	93, 213
MslI	CAYNNNNRTG	2 cut(s)	81, 705
MspA1I	CMGCKG	1 cut(s)	42
MspI	CCGG	1 cut(s)	469
MspR9I	CCNGG	3 cut(s)	305, 469, 556
MunI	CAATTG	2 cut(s)	321, 684
MvaI	CCWGG	2 cut(s)	305, 556
MvnI	CGCG	1 cut(s)	42
NciI	CCSGG	1 cut(s)	469
NdeII	GATC	3 cut(s)	252, 300, 732
NlaIII	CATG	3 cut(s)	298, 525, 866
NlaIV	GGNNCC	1 cut(s)	754
NmuCI	GTSAC	3 cut(s)	463, 633, 646
PflMI	CCANNNNNTGG	1 cut(s)	689
PkrI	GCNGC	1 cut(s)	44
PleI	GAGTC	2 cut(s)	640, 903
PpsI	GAGTC	2 cut(s)	640, 903
PshAI	GACNNNNGTC	1 cut(s)	631
Psp6I	CCWGG	2 cut(s)	303, 554
PspGI	CCWGG	2 cut(s)	303, 554
PspN4I	GGNNCC	1 cut(s)	754
PspPI	GGNCC	1 cut(s)	752
PstNI	CAGNNNCTG	1 cut(s)	787
PsuI	RGATCY	1 cut(s)	300
RsaI	GTAC	3 cut(s)	149, 586, 899
RsaNI	GTAC	3 cut(s)	148, 585, 898
RseI	CAYNNNNRTG	2 cut(s)	81, 705
SacII	CCGCGG	1 cut(s)	43
SaqAI	TTAA	2 cut(s)	93, 213
SatI	GCNGC	1 cut(s)	43
Sau3AI	GATC	3 cut(s)	252, 300, 732
Sau96I	GGNCC	1 cut(s)	752
ScaI	AGTACT	2 cut(s)	149, 899
SchI	GAGTC	2 cut(s)	641, 903
ScrFI	CCNGG	3 cut(s)	305, 469, 556
SduI	GDGCHC	1 cut(s)	73
SfaNI	GCATC	4 cut(s)	85, 367, 535, 731
Sfr303I	CCGCGG	1 cut(s)	43
SgrBI	CCGCGG	1 cut(s)	43
SinI	GGWCC	1 cut(s)	752
SmiMI	CAYNNNNRTG	2 cut(s)	81, 705
SmlI	CTYRAG	4 cut(s)	791, 815, 830, 911
SmoI	CTYRAG	4 cut(s)	791, 815, 830, 911
Sse9I	AATT	4 cut(s)	321, 338, 603, 684
SsiI	CCGC	2 cut(s)	40, 42
SspI	AATATT	1 cut(s)	187
StyD4I	CCNGG	3 cut(s)	303, 467, 554
TaaI	ACNGT	4 cut(s)	64, 226, 550, 584
TaqI	TCGA	2 cut(s)	232, 840
TasI	AATT	4 cut(s)	321, 338, 603, 684
TatI	WGTACW	2 cut(s)	147, 897
TauI	GCSGC	1 cut(s)	45
Tru1I	TTAA	2 cut(s)	93, 213
Tru9I	TTAA	2 cut(s)	93, 213
TscAI	CASTG	4 cut(s)	69, 88, 646, 655
TseFI	GTSAC	3 cut(s)	463, 633, 646
Tsp45I	GTSAC	3 cut(s)	463, 633, 646
TspDTI	ATGAA	6 cut(s)	177, 278, 453, 531, 608, 826
TspRI	CASTG	4 cut(s)	69, 88, 646, 655
Van91I	CCANNNNNTGG	1 cut(s)	689
VpaK11BI	GGWCC	1 cut(s)	752
XapI	RAATTY	2 cut(s)	338, 603
XcmI	CCANNNNNNNNNTGG	1 cut(s)	311
ZrmI	AGTACT	2 cut(s)	149, 899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.