Prupe.1G579300_v2.0.a1

60S ribosomal protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
47141812 .. 47145320
3509 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G579300.1

Sequence Viewer

Length: 1170 bp
ATGTCTCATCGCAAGTTTGAACACCCAAGACATGGCTCTTTGGGATTTCTTCCAAGGAAAAGAGCAGCCCGCCACAGAGGAAAAGTGAAGGCCTTCCCAAAAGATGATCCAACCAAATCTTGCAGTTTGACTGCTTTCCTGGGATACAAAGCTGGAATGACCCATATTATGAGAGATGTTGAAAAACCAGGATCAAAGCTACACAAGAAGGAAACATGTGAAGCAGTTACAATTATTGAAACACCGCCAATGGTGGTGGTTGGGGTTGTTGGTTATGTGAAGACTCCCCGTGGTCTCCGTTCTTTGGACACAGTGTGGGCTCAGCATCTGAGTGAGGAGGTGAAGAGGAGATTCTACAAGAACTGGTGCAAGTCTAAAAAGAAGGCATTCACCAAGTACTCAAAGAAATTTGAGAGCGAAGGTGGGAAAAAGGATATCCAGGCTCAATTGGAGAAAATGAAGAAGTACTCCTCTGTGATTCGTGTTTTGGCTCACACTCAGATTAGAAAAATGAAGGGATTGAAGCAGAAGAAAGCCCATCTGATGGAGATTCAGGTGAATGGTGGAGACATTGCAAAGAAGGTTGACTATGCTTACAGTTTGTTTGAGAAGCAGATTCCTGTTGATGCTGTTTTCCAGAAGGACGAGATGATTGACATTATTGGGGTGACCAAGGGGAAGGGTTATGAGGGTGTGGTGACACGTTGGGGTGTGACCCGGCTTCCACGTAAAACCCATCGTGGGCTGCGGAAGGTAGCCTGTATTGGTGCCTGGCATCCAGCTAGGGTTTCATTTACTGTTGCCAGGGCTGGGCAGAATGGTTACCATCATCGTACTGAGATGAACAAGAAGATTTACAAGCTTGGAAAGGTTGGGCAAGAGTCACACTCTGCAATGACTGAGTTTGACAGGACTGAGAAGGATATTACACCAATGGGAGGTTTCCCACACTATGGTGCAGTGAAAGAGGATTATCTTCTAATGAAGGGCTGCTGTGTGGGTCCTAAAAAGCGGGTTGTTACCTTGAGGCAGTCACTTCTGAAGCAGACATCTAGGGTTGCTTTGGAGGACATTAAGCTCAAGTTTATTGATACGTCATCCAAATTTGGCCATGGTCGTTTCCAAACTACCCAAGAGAAGGCTAGGTTCTACGGACGGCTGAAGGCTTAA

Protein Analysis

390

Amino Acids

44.34

Weight (kDa)

10.14

Isoelectric Point (pI)

31.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 767
AccB7I CCANNNNNTGG 3 cut(s) 32, 544, 953
AciI CCGC 4 cut(s) 70, 245, 748, 1012
AclWI GGATC 2 cut(s) 101, 199
AcoI YGGCCR 1 cut(s) 1108
AcsI RAATTY 2 cut(s) 407, 1103
AcuI CTGAAG 1 cut(s) 1061
AdeI CACNNNGTG 1 cut(s) 315
AfaI GTAC 3 cut(s) 398, 467, 835
AfiI CCNNNNNNNGG 8 cut(s) 32, 304, 544, 741, 810, 938, 953, 1138
AflIII ACRYGT 2 cut(s) 215, 701
AgsI TTSAA 4 cut(s) 20, 182, 239, 523
AjnI CCWGG 5 cut(s) 138, 187, 438, 770, 803
AleI CACNNNNGTG 1 cut(s) 954
AluBI AGCT 5 cut(s) 152, 199, 782, 862, 1078
AluI AGCT 5 cut(s) 152, 199, 782, 862, 1078
Alw26I GTCTC 3 cut(s) 9, 299, 561
AlwI GGATC 2 cut(s) 101, 199
AlwNI CAGNNNCTG 1 cut(s) 328
AoxI GGCC 2 cut(s) 90, 1108
ApeKI GCWGC 3 cut(s) 65, 745, 990
ApoI RAATTY 2 cut(s) 407, 1103
Asp700I GAANNNNTTC 2 cut(s) 92, 386
AspS9I GGNCC 1 cut(s) 1001
AsuC2I CCSGG 1 cut(s) 718
AsuHPI GGTGA 5 cut(s) 352, 382, 568, 679, 709
AvaII GGWCC 1 cut(s) 1001
BalI TGGCCA 1 cut(s) 1110
BanI GGYRCC 1 cut(s) 767
BanII GRGCYC 1 cut(s) 322
BbsI GAAGAC 1 cut(s) 287
BbvI GCAGC 3 cut(s) 77, 732, 977
BccI CCATC 4 cut(s) 538, 546, 744, 834
BciT130I CCWGG 5 cut(s) 140, 189, 440, 772, 805
BciVI GTATCC 1 cut(s) 137
BcnI CCSGG 1 cut(s) 718
BcoDI GTCTC 3 cut(s) 9, 299, 561
BfaI CTAG 3 cut(s) 783, 1053, 1143
BfuI GTATCC 1 cut(s) 137
BisI GCNGC 3 cut(s) 66, 746, 991
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 3 cut(s) 67, 747, 992
BmcAI AGTACT 2 cut(s) 398, 467
Bme1390I CCNGG 6 cut(s) 140, 189, 440, 718, 772, 805
Bme18I GGWCC 1 cut(s) 1001
BmgT120I GGNCC 1 cut(s) 1001
BmiI GGNNCC 2 cut(s) 769, 1002
BmrFI CCNGG 6 cut(s) 140, 189, 440, 718, 772, 805
BmsI GCATC 3 cut(s) 334, 616, 784
BpiI GAAGAC 1 cut(s) 287
BplI GAGNNNNNCTC 2 cut(s) 872, 904
Bpu1102I GCTNAGC 1 cut(s) 321
BpuEI CTTGAG 2 cut(s) 1045, 1064
BpuMI CCSGG 1 cut(s) 718
BsaAI YACGTR 1 cut(s) 728
BsaI GGTCTC 1 cut(s) 299
BsaJI CCNNGG 6 cut(s) 53, 139, 289, 672, 804, 1111
Bsc4I CCNNNNNNNGG 8 cut(s) 32, 304, 544, 741, 810, 938, 953, 1138
Bse1I ACTGG 1 cut(s) 368
Bse3DI GCAATG 2 cut(s) 570, 900
BseBI CCWGG 5 cut(s) 140, 189, 440, 772, 805
BseDI CCNNGG 6 cut(s) 53, 139, 289, 672, 804, 1111
BseGI GGATG 2 cut(s) 775, 1097
BseLI CCNNNNNNNGG 8 cut(s) 32, 304, 544, 741, 810, 938, 953, 1138
BseMI GCAATG 2 cut(s) 570, 900
BseMII CTCAG 6 cut(s) 320, 335, 512, 828, 891, 906
BseNI ACTGG 1 cut(s) 368
BseRI GAGGAG 3 cut(s) 350, 361, 460
BseXI GCAGC 3 cut(s) 77, 732, 977
BseYI CCCAGC 1 cut(s) 809
BsgI GTGCAG 1 cut(s) 978
BshFI GGCC 2 cut(s) 92, 1110
BshNI GGYRCC 1 cut(s) 767
BsiSI CCGG 1 cut(s) 718
BslI CCNNNNNNNGG 8 cut(s) 32, 304, 544, 741, 810, 938, 953, 1138
BsmAI GTCTC 3 cut(s) 9, 299, 561
BsmI GAATGC 1 cut(s) 386
BsnI GGCC 2 cut(s) 92, 1110
Bso31I GGTCTC 1 cut(s) 299
Bsp1286I GDGCHC 1 cut(s) 322
Bsp143I GATC 2 cut(s) 106, 191
Bsp1720I GCTNAGC 1 cut(s) 321
Bsp19I CCATGG 1 cut(s) 1111
BspACI CCGC 4 cut(s) 70, 245, 748, 1012
BspANI GGCC 2 cut(s) 92, 1110
BspCNI CTCAG 6 cut(s) 321, 334, 511, 829, 892, 907
BspLI GGNNCC 2 cut(s) 769, 1002
BspPI GGATC 2 cut(s) 101, 199
BspT107I GGYRCC 1 cut(s) 767
BspTNI GGTCTC 1 cut(s) 299
BsrDI GCAATG 2 cut(s) 570, 900
BsrI ACTGG 1 cut(s) 368
BssECI CCNNGG 6 cut(s) 53, 139, 289, 672, 804, 1111
BssMI GATC 2 cut(s) 106, 191
BssT1I CCWWGG 3 cut(s) 53, 672, 1111
Bst2UI CCWGG 5 cut(s) 140, 189, 440, 772, 805
Bst4CI ACNGT 3 cut(s) 313, 599, 799
Bst6I CTCTTC 1 cut(s) 338
BstBAI YACGTR 1 cut(s) 728
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 6 cut(s) 321, 329, 498, 837, 900, 915
BstDSI CCRYGG 2 cut(s) 289, 1111
BstEII GGTNACC 2 cut(s) 667, 821
BstF5I GGATG 2 cut(s) 775, 1097
BstKTI GATC 2 cut(s) 109, 194
BstMAI GTCTC 3 cut(s) 9, 299, 561
BstMBI GATC 2 cut(s) 106, 191
BstNI CCWGG 5 cut(s) 140, 189, 440, 772, 805
BstNSI RCATGY 1 cut(s) 219
BstPI GGTNACC 2 cut(s) 667, 821
BstSCI CCNGG 6 cut(s) 138, 187, 438, 716, 770, 803
BstV1I GCAGC 3 cut(s) 77, 732, 977
BstV2I GAAGAC 1 cut(s) 287
BsuI GTATCC 1 cut(s) 137
BsuRI GGCC 2 cut(s) 92, 1110
BtgI CCRYGG 2 cut(s) 289, 1111
BtsCI GGATG 2 cut(s) 775, 1097
BtsI GCAGTG 1 cut(s) 966
BtsIMutI CAGTG 2 cut(s) 318, 966
Cac8I GCNNGC 1 cut(s) 70
CaiI CAGNNNCTG 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 1001
Csp6I GTAC 3 cut(s) 397, 466, 834
CspCI CAANNNNNGTGG 2 cut(s) 237, 272
CviAII CATG 3 cut(s) 32, 216, 1112
CviQI GTAC 3 cut(s) 397, 466, 834
DdeI CTNAG 6 cut(s) 321, 329, 498, 837, 900, 915
DpnI GATC 2 cut(s) 108, 193
DpnII GATC 2 cut(s) 106, 191
DraIII CACNNNGTG 1 cut(s) 315
EaeI YGGCCR 1 cut(s) 1108
Eam1104I CTCTTC 1 cut(s) 338
EarI CTCTTC 1 cut(s) 338
Eco130I CCWWGG 3 cut(s) 53, 672, 1111
Eco147I AGGCCT 1 cut(s) 92
Eco24I GRGCYC 1 cut(s) 322
Eco31I GGTCTC 1 cut(s) 299
Eco32I GATATC 1 cut(s) 436
Eco47I GGWCC 1 cut(s) 1001
Eco57I CTGAAG 1 cut(s) 1061
Eco91I GGTNACC 2 cut(s) 667, 821
EcoO109I RGGNCCY 1 cut(s) 1001
EcoO65I GGTNACC 2 cut(s) 667, 821
EcoRII CCWGG 5 cut(s) 138, 187, 438, 770, 803
EcoRV GATATC 1 cut(s) 436
EcoT14I CCWWGG 3 cut(s) 53, 672, 1111
EcoT38I GRGCYC 1 cut(s) 322
ErhI CCWWGG 3 cut(s) 53, 672, 1111
FaeI CATG 3 cut(s) 35, 219, 1115
FaiI YATR 9 cut(s) 33, 165, 170, 217, 276, 591, 687, 954, 1113
FatI CATG 3 cut(s) 31, 215, 1111
FauI CCCGC 2 cut(s) 77, 1005
Fnu4HI GCNGC 3 cut(s) 66, 746, 991
FokI GGATG 2 cut(s) 762, 1084
FriOI GRGCYC 1 cut(s) 322
Fsp4HI GCNGC 3 cut(s) 66, 746, 991
FspBI CTAG 3 cut(s) 783, 1053, 1143
GluI GCNGC 3 cut(s) 66, 746, 991
GsaI CCCAGC 1 cut(s) 813
HaeIII GGCC 2 cut(s) 92, 1110
HapII CCGG 1 cut(s) 718
Hin1II CATG 3 cut(s) 35, 219, 1115
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HindIII AAGCTT 1 cut(s) 860
HinfI GANTC 6 cut(s) 283, 351, 478, 550, 616, 881
HpaII CCGG 1 cut(s) 718
HphI GGTGA 5 cut(s) 352, 382, 568, 679, 709
Hpy166II GTNNAC 1 cut(s) 586
Hpy188I TCNGA 4 cut(s) 330, 501, 543, 1041
Hpy188III TCNNGA 1 cut(s) 637
Hpy8I GTNNAC 1 cut(s) 586
HpyCH4III ACNGT 3 cut(s) 313, 599, 799
HpyCH4IV ACGT 3 cut(s) 703, 727, 1094
HpyCH4V TGCA 5 cut(s) 123, 369, 575, 893, 959
HpyF3I CTNAG 6 cut(s) 321, 329, 498, 837, 900, 915
HpySE526I ACGT 3 cut(s) 703, 727, 1094
Hsp92II CATG 3 cut(s) 35, 219, 1115
Kzo9I GATC 2 cut(s) 106, 191
Lsp1109I GCAGC 3 cut(s) 77, 732, 977
LweI GCATC 3 cut(s) 334, 616, 784
MaeI CTAG 3 cut(s) 783, 1053, 1143
MaeII ACGT 3 cut(s) 703, 727, 1094
MaeIII GTNAC 8 cut(s) 226, 667, 697, 712, 821, 882, 1018, 1032
MalI GATC 2 cut(s) 108, 193
MboI GATC 2 cut(s) 106, 191
MboII GAAGA 7 cut(s) 41, 292, 355, 472, 541, 862, 968
MfeI CAATTG 1 cut(s) 446
MhlI GDGCHC 1 cut(s) 322
MlsI TGGCCA 1 cut(s) 1110
MluCI AATT 4 cut(s) 231, 407, 446, 1103
MluNI TGGCCA 1 cut(s) 1110
MlyI GAGTC 2 cut(s) 277, 890
MmeI TCCRAC 1 cut(s) 134
Mox20I TGGCCA 1 cut(s) 1110
MroXI GAANNNNTTC 2 cut(s) 92, 386
MscI TGGCCA 1 cut(s) 1110
MseI TTAA 2 cut(s) 1074, 1168
MslI CAYNNNNRTG 2 cut(s) 330, 954
Msp20I TGGCCA 1 cut(s) 1110
MspI CCGG 1 cut(s) 718
MspR9I CCNGG 6 cut(s) 140, 189, 440, 718, 772, 805
MunI CAATTG 1 cut(s) 446
Mva1269I GAATGC 1 cut(s) 386
MvaI CCWGG 5 cut(s) 140, 189, 440, 772, 805
NciI CCSGG 1 cut(s) 718
NcoI CCATGG 1 cut(s) 1111
NdeII GATC 2 cut(s) 106, 191
NlaIII CATG 3 cut(s) 35, 219, 1115
NlaIV GGNNCC 2 cut(s) 769, 1002
NmuCI GTSAC 5 cut(s) 667, 697, 712, 882, 1032
NspI RCATGY 1 cut(s) 219
OliI CACNNNNGTG 1 cut(s) 954
PceI AGGCCT 1 cut(s) 92
PciI ACATGT 1 cut(s) 215
PctI GAATGC 1 cut(s) 386
PdmI GAANNNNTTC 2 cut(s) 92, 386
PfeI GAWTC 4 cut(s) 351, 478, 550, 616
PflMI CCANNNNNTGG 3 cut(s) 32, 544, 953
PkrI GCNGC 3 cut(s) 67, 747, 992
PleI GAGTC 2 cut(s) 277, 889
PpsI GAGTC 2 cut(s) 277, 889
Ppu21I YACGTR 1 cut(s) 728
PpuMI RGGWCCY 1 cut(s) 1001
PscI ACATGT 1 cut(s) 215
Psp5II RGGWCCY 1 cut(s) 1001
Psp6I CCWGG 5 cut(s) 138, 187, 438, 770, 803
PspEI GGTNACC 2 cut(s) 667, 821
PspFI CCCAGC 1 cut(s) 809
PspGI CCWGG 5 cut(s) 138, 187, 438, 770, 803
PspN4I GGNNCC 2 cut(s) 769, 1002
PspPI GGNCC 1 cut(s) 1001
PspPPI RGGWCCY 1 cut(s) 1001
PstNI CAGNNNCTG 1 cut(s) 328
RsaI GTAC 3 cut(s) 398, 467, 835
RsaNI GTAC 3 cut(s) 397, 466, 834
RseI CAYNNNNRTG 2 cut(s) 330, 954
SaqAI TTAA 2 cut(s) 1074, 1168
SatI GCNGC 3 cut(s) 66, 746, 991
Sau3AI GATC 2 cut(s) 106, 191
Sau96I GGNCC 1 cut(s) 1001
ScaI AGTACT 2 cut(s) 398, 467
SchI GAGTC 2 cut(s) 277, 890
ScrFI CCNGG 6 cut(s) 140, 189, 440, 718, 772, 805
SduI GDGCHC 1 cut(s) 322
SfaNI GCATC 3 cut(s) 334, 616, 784
SinI GGWCC 1 cut(s) 1001
SmiMI CAYNNNNRTG 2 cut(s) 330, 954
SmlI CTYRAG 2 cut(s) 1024, 1079
SmoI CTYRAG 2 cut(s) 1024, 1079
Sse9I AATT 4 cut(s) 231, 407, 446, 1103
SseBI AGGCCT 1 cut(s) 92
SsiI CCGC 4 cut(s) 70, 245, 748, 1012
SspMI CTAG 3 cut(s) 783, 1053, 1143
StuI AGGCCT 1 cut(s) 92
StyD4I CCNGG 6 cut(s) 138, 187, 438, 716, 770, 803
StyI CCWWGG 3 cut(s) 53, 672, 1111
TaaI ACNGT 3 cut(s) 313, 599, 799
TaiI ACGT 3 cut(s) 706, 730, 1097
TasI AATT 4 cut(s) 231, 407, 446, 1103
TatI WGTACW 2 cut(s) 396, 465
TfiI GAWTC 4 cut(s) 351, 478, 550, 616
Tru1I TTAA 2 cut(s) 1074, 1168
Tru9I TTAA 2 cut(s) 1074, 1168
TscAI CASTG 2 cut(s) 318, 966
TseFI GTSAC 5 cut(s) 667, 697, 712, 882, 1032
TseI GCWGC 3 cut(s) 65, 745, 990
Tsp45I GTSAC 5 cut(s) 667, 697, 712, 882, 1032
TspDTI ATGAA 5 cut(s) 473, 527, 780, 857, 998
TspGWI ACGGA 2 cut(s) 287, 1167
TspRI CASTG 2 cut(s) 318, 966
Van91I CCANNNNNTGG 3 cut(s) 32, 544, 953
VpaK11BI GGWCC 1 cut(s) 1001
XapI RAATTY 2 cut(s) 407, 1103
XceI RCATGY 1 cut(s) 219
XmnI GAANNNNTTC 2 cut(s) 92, 386
XspI CTAG 3 cut(s) 783, 1053, 1143
ZrmI AGTACT 2 cut(s) 398, 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.