Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004102

Physical Location & Seq

Genomic Coordinates Reverse (-)

19638285 .. 19640512

Gene Structure 2228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G52710.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGATTCGTCTTGACAAAGAGTATAGTGGAAGGAGGCTGCTTGACATCGACCACCCTGAAAGTCCTTTTGGTACAAAGGAATCTCCTGCTGTCGTACAGTCCTACTTTGACAAGAGAAATATCGGATGCCGTGGTGGTGAAGGCGAGGATGGACACGACGTCGTTTGGTTCTGGCTAGATAAAGGAAAGTCATTTGAATGTCCAGTGTGCTCCCAATACTTTGAGCACGGACCACCAGACGGTCATGGTGACGATGAAGACCACCACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004129 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0007275 GO:0007568 GO:0007585 GO:0008150 GO:0008152 GO:0008270 GO:0008324 GO:0008340 GO:0009055 GO:0009058 GO:0009060 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009719 GO:0009725 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010876 GO:0015002 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016021 GO:0016310 GO:0016491 GO:0016675 GO:0016676 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0019915 GO:0022857 GO:0022890 GO:0022900 GO:0022904 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042221 GO:0042651 GO:0042773 GO:0042775 GO:0042776 GO:0043167 GO:0043169 GO:0043209 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043434 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046872 GO:0046907 GO:0046914 GO:0048856 GO:0050896 GO:0050897 GO:0051179 GO:0051234 GO:0051235 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0055086 GO:0055114 GO:0065007 GO:0065008 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901652 GO:1901698 GO:1901700 GO:1902600 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX5B

Protein Analysis

90

Amino Acids

10.3

Weight (kDa)

5.03

Isoelectric Point (pI)

59.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52710 AT1G80230 AT3G15640 AT3G15640
fragaria_vesca	FvH4_2g29600 FvH4_6g30460
malus_domestica	MD08G1145100.v1.1 MD09G1221700.v1.1 MD15G1120800.v1.1 MD17G1203700.v1.1
prunus_persica	Prupe.1G473400_v2.0.a1 Prupe.3G078600_v2.0.a1
pyrus_communis	pycom15g10900 pycom17g20730
rosa_chinensis	RchiOBHm_Chr2g0136811 RchiOBHm_Chr6g0298591
rosa_laevigata	RLG00000011501 RLG00000019579
rosa_multiflora	Rmu_sc0001299.1_g000014 Rmu_sc0001534.1_g000012 Rmu_sc0004500.1_g000013 Rmu_sc0005272.1_g000001
rosa_roxburghii	Rroxscaffold_2G00107970 Rroxscaffold_7G00169510
rosa_rugosa	Rorug02G0334000 Rorug06G0281200
rosa_samantha	Rh2BG391100 Rh6AG392900 Rh6BG400600 Rh6CG406500 Rh6DG393200
rosa_wichuraiana	Rw2G031430 Rw6G034340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	162
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	2 cut(s)	73, 96
AfiI	CCNNNNNNNGG	1 cut(s)	239
AgsI	TTSAA	1 cut(s)	197
AhdI	GACNNNNNGTC	1 cut(s)	158
AjuI	GAANNNNNNNTTGG	2 cut(s)	51, 83
Alw21I	GWGCWC	2 cut(s)	212, 228
ApeKI	GCWGC	1 cut(s)	37
AspS9I	GGNCC	1 cut(s)	230
AsuHPI	GGTGA	2 cut(s)	149, 260
AvaII	GGWCC	1 cut(s)	230
BbsI	GAAGAC	1 cut(s)	264
Bbv12I	GWGCWC	2 cut(s)	212, 228
BbvI	GCAGC	1 cut(s)	24
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	114
BfaI	CTAG	1 cut(s)	176
BisI	GCNGC	1 cut(s)	38
BlsI	GCNGC	1 cut(s)	39
Bme18I	GGWCC	1 cut(s)	230
BmeRI	GACNNNNNGTC	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	230
BmsI	GCATC	1 cut(s)	116
BpiI	GAAGAC	1 cut(s)	264
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	130
BseGI	GGATG	2 cut(s)	131, 154
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseNI	ACTGG	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	24
BsiHKAI	GWGCWC	2 cut(s)	212, 228
BslI	CCNNNNNNNGG	1 cut(s)	239
Bsp1286I	GDGCHC	2 cut(s)	212, 228
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	130
BssNI	GRCGYC	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	99, 242
BstACI	GRCGYC	1 cut(s)	159
BstDSI	CCRYGG	1 cut(s)	130
BstF5I	GGATG	2 cut(s)	131, 154
BstV1I	GCAGC	1 cut(s)	24
BstV2I	GAAGAC	1 cut(s)	264
BtgI	CCRYGG	1 cut(s)	130
BtsCI	GGATG	2 cut(s)	131, 154
BtsIMutI	CAGTG	1 cut(s)	210
Cfr13I	GGNCC	1 cut(s)	230
Csp6I	GTAC	2 cut(s)	72, 95
CspCI	CAANNNNNGTGG	1 cut(s)	251
CviAII	CATG	1 cut(s)	245
CviJI	RGCY	2 cut(s)	37, 175
CviKI_1	RGCY	2 cut(s)	37, 175
CviQI	GTAC	2 cut(s)	72, 95
DriI	GACNNNNNGTC	1 cut(s)	158
Eam1105I	GACNNNNNGTC	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	230
FaeI	CATG	1 cut(s)	248
FaiI	YATR	2 cut(s)	24, 246
FatI	CATG	1 cut(s)	244
Fnu4HI	GCNGC	1 cut(s)	38
FokI	GGATG	2 cut(s)	138, 161
Fsp4HI	GCNGC	1 cut(s)	38
FspBI	CTAG	1 cut(s)	176
GluI	GCNGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	1 cut(s)	248
HinfI	GANTC	2 cut(s)	4, 80
HphI	GGTGA	2 cut(s)	149, 260
Hpy188I	TCNGA	1 cut(s)	125
Hpy188III	TCNNGA	1 cut(s)	11
Hpy99I	CGWCG	2 cut(s)	161, 164
HpyAV	CCTTC	2 cut(s)	24, 134
HpyCH4III	ACNGT	2 cut(s)	99, 242
HpyCH4IV	ACGT	1 cut(s)	159
HpySE526I	ACGT	1 cut(s)	159
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	1 cut(s)	248
LmnI	GCTCC	1 cut(s)	215
LpnPI	CCDG	5 cut(s)	69, 99, 157, 216, 249
Lsp1109I	GCAGC	1 cut(s)	24
LweI	GCATC	1 cut(s)	116
MaeI	CTAG	1 cut(s)	176
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	1 cut(s)	248
MboII	GAAGA	1 cut(s)	269
MhlI	GDGCHC	2 cut(s)	212, 228
MnlI	CCTC	2 cut(s)	27, 139
MslI	CAYNNNNRTG	1 cut(s)	196
NlaIII	CATG	1 cut(s)	248
NmuCI	GTSAC	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	4, 80
PkrI	GCNGC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	230
RsaI	GTAC	2 cut(s)	73, 96
RsaNI	GTAC	2 cut(s)	72, 95
RseI	CAYNNNNRTG	1 cut(s)	196
SatI	GCNGC	1 cut(s)	38
Sau96I	GGNCC	1 cut(s)	230
SduI	GDGCHC	2 cut(s)	212, 228
SetI	ASST	1 cut(s)	162
SfaNI	GCATC	1 cut(s)	116
SinI	GGWCC	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	196
SspMI	CTAG	1 cut(s)	176
TaaI	ACNGT	2 cut(s)	99, 242
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	1 cut(s)	48
TfiI	GAWTC	2 cut(s)	4, 80
TscAI	CASTG	1 cut(s)	210
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	1 cut(s)	37
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	1 cut(s)	270
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	1 cut(s)	210
VpaK11BI	GGWCC	1 cut(s)	230
XspI	CTAG	1 cut(s)	176
ZraI	GACGTC	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.