pycom17g20730

Cytochrome C oxidase, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0004102
Physical Location & Seq
Forward (+)
19157006 .. 19157657
652 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g20730.3

Sequence Viewer

Length: 303 bp
ATGTGGCGGAGACTGCTCTCTTCCTCTCAGCTCAAAACCCTAACCCTAGCCGCCGCCGCTCCATGCCGATCGGCTGCTGGACCCGCCCGGTCTCTCCTCCACAAGCCCCTTCCTCTCCTTCCTAGCTACTTCAGCACCACTGCCGAAGCTGCGACGACTGGTGTGAAGAAGGTTGAGGACGTTATGCCCATTGCCACTGGCCACGAGCGAGAGGAGCTTGAAGCTGAACTTGAGGGAAGGGATGTTCTCGAAATCAACTATCCTGTTGGTCCTTTTGGCACAAAGGTCAGTGCTATCTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0009058 GO:0009060 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016310 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034220 GO:0034641 GO:0034654 GO:0042773 GO:0042775 GO:0042776 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990542
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
COX5B

Protein Analysis

101

Amino Acids

10.72

Weight (kDa)

6.73

Isoelectric Point (pI)

51.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 59
AciI CCGC 5 cut(s) 7, 51, 54, 57, 84
AcoI YGGCCR 1 cut(s) 199
AcuI CTGAAG 1 cut(s) 115
AgsI TTSAA 1 cut(s) 221
AloI GAACNNNNNNTCC 2 cut(s) 228, 260
AluBI AGCT 5 cut(s) 31, 126, 149, 217, 224
AluI AGCT 5 cut(s) 31, 126, 149, 217, 224
Alw26I GTCTC 2 cut(s) 4, 96
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 2 cut(s) 74, 149
AspS9I GGNCC 2 cut(s) 80, 269
AsuC2I CCSGG 1 cut(s) 88
AvaII GGWCC 2 cut(s) 80, 269
BalI TGGCCA 1 cut(s) 201
BauI CACGAG 2 cut(s) 203, 298
BbvI GCAGC 2 cut(s) 61, 136
BcnI CCSGG 1 cut(s) 88
BcoDI GTCTC 2 cut(s) 4, 96
BfaI CTAG 2 cut(s) 47, 123
BisI GCNGC 5 cut(s) 51, 54, 57, 75, 150
BlsI GCNGC 5 cut(s) 52, 55, 58, 76, 151
Bme1390I CCNGG 1 cut(s) 88
Bme18I GGWCC 2 cut(s) 80, 269
BmgT120I GGNCC 2 cut(s) 80, 269
BmiI GGNNCC 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 88
BpuEI CTTGAG 1 cut(s) 251
BpuMI CCSGG 1 cut(s) 88
BsaI GGTCTC 1 cut(s) 96
Bse1I ACTGG 2 cut(s) 163, 202
Bse3DI GCAATG 1 cut(s) 189
BseGI GGATG 1 cut(s) 247
BseMI GCAATG 1 cut(s) 189
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 2 cut(s) 163, 202
BseRI GAGGAG 2 cut(s) 86, 227
BseXI GCAGC 2 cut(s) 61, 136
Bsh1285I CGRYCG 1 cut(s) 71
BshFI GGCC 1 cut(s) 201
BsiEI CGRYCG 1 cut(s) 71
BsiSI CCGG 1 cut(s) 88
BsmAI GTCTC 2 cut(s) 4, 96
BsnI GGCC 1 cut(s) 201
Bso31I GGTCTC 1 cut(s) 96
Bsp143I GATC 1 cut(s) 68
BspACI CCGC 5 cut(s) 7, 51, 54, 57, 84
BspANI GGCC 1 cut(s) 201
BspCNI CTCAG 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 82
BspTNI GGTCTC 1 cut(s) 96
BsrBI CCGCTC 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 189
BsrI ACTGG 2 cut(s) 163, 202
BssMI GATC 1 cut(s) 68
BssSI CACGAG 2 cut(s) 203, 298
Bst2BI CACGAG 2 cut(s) 203, 298
Bst6I CTCTTC 1 cut(s) 25
BstDEI CTNAG 1 cut(s) 27
BstF5I GGATG 1 cut(s) 247
BstKTI GATC 1 cut(s) 71
BstMAI GTCTC 2 cut(s) 4, 96
BstMBI GATC 1 cut(s) 68
BstMCI CGRYCG 1 cut(s) 71
BstMWI GCNNNNNNNGC 6 cut(s) 13, 56, 83, 132, 149, 214
BstSCI CCNGG 1 cut(s) 86
BstV1I GCAGC 2 cut(s) 61, 136
BsuRI GGCC 1 cut(s) 201
BtsCI GGATG 1 cut(s) 247
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 3 cut(s) 138, 195, 295
Cfr13I GGNCC 2 cut(s) 80, 269
CviAII CATG 1 cut(s) 63
CviJI RGCY 9 cut(s) 31, 50, 74, 106, 126, 149, 201, 217, 224
CviKI_1 RGCY 9 cut(s) 31, 50, 74, 106, 126, 149, 201, 217, 224
DdeI CTNAG 1 cut(s) 27
DpnI GATC 1 cut(s) 70
DpnII GATC 1 cut(s) 68
EaeI YGGCCR 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
EciI GGCGGA 1 cut(s) 22
Eco31I GGTCTC 1 cut(s) 96
Eco47I GGWCC 2 cut(s) 80, 269
Eco57I CTGAAG 1 cut(s) 115
FaeI CATG 1 cut(s) 66
FaiI YATR 2 cut(s) 64, 185
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FatI CATG 1 cut(s) 62
FauI CCCGC 1 cut(s) 91
Fnu4HI GCNGC 5 cut(s) 51, 54, 57, 75, 150
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 5 cut(s) 51, 54, 57, 75, 150
FspBI CTAG 2 cut(s) 47, 123
GluI GCNGC 5 cut(s) 51, 54, 57, 75, 150
HaeIII GGCC 1 cut(s) 201
HapII CCGG 1 cut(s) 88
Hin1II CATG 1 cut(s) 66
HpaII CCGG 1 cut(s) 88
Hpy188III TCNNGA 2 cut(s) 248, 300
Hpy99I CGWCG 1 cut(s) 157
HpyAV CCTTC 4 cut(s) 119, 128, 163, 231
HpyCH4IV ACGT 1 cut(s) 180
HpyF10VI GCNNNNNNNGC 6 cut(s) 13, 56, 83, 132, 149, 214
HpyF3I CTNAG 1 cut(s) 27
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 1 cut(s) 66
Kzo9I GATC 1 cut(s) 68
LmnI GCTCC 2 cut(s) 64, 214
LpnPI CCDG 5 cut(s) 63, 101, 144, 183, 276
Lsp1109I GCAGC 2 cut(s) 61, 136
MaeI CTAG 2 cut(s) 47, 123
MaeII ACGT 1 cut(s) 180
MalI GATC 1 cut(s) 70
MbiI CCGCTC 1 cut(s) 59
MboI GATC 1 cut(s) 68
MboII GAAGA 2 cut(s) 12, 178
MlsI TGGCCA 1 cut(s) 201
MluNI TGGCCA 1 cut(s) 201
MnlI CCTC 6 cut(s) 34, 107, 123, 169, 205, 226
Mox20I TGGCCA 1 cut(s) 201
MscI TGGCCA 1 cut(s) 201
Msp20I TGGCCA 1 cut(s) 201
MspI CCGG 1 cut(s) 88
MspR9I CCNGG 1 cut(s) 88
MwoI GCNNNNNNNGC 6 cut(s) 13, 56, 83, 132, 149, 214
NciI CCSGG 1 cut(s) 88
NdeII GATC 1 cut(s) 68
NlaIII CATG 1 cut(s) 66
NlaIV GGNNCC 1 cut(s) 82
PkrI GCNGC 5 cut(s) 52, 55, 58, 76, 151
Ple19I CGATCG 1 cut(s) 71
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 2 cut(s) 80, 269
PvuI CGATCG 1 cut(s) 71
SatI GCNGC 5 cut(s) 51, 54, 57, 75, 150
Sau3AI GATC 1 cut(s) 68
Sau96I GGNCC 2 cut(s) 80, 269
ScrFI CCNGG 1 cut(s) 88
SetI ASST 8 cut(s) 33, 128, 151, 174, 183, 219, 226, 288
SinI GGWCC 2 cut(s) 80, 269
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
SsiI CCGC 5 cut(s) 7, 51, 54, 57, 84
SspMI CTAG 2 cut(s) 47, 123
StyD4I CCNGG 1 cut(s) 86
TaiI ACGT 1 cut(s) 183
TaqI TCGA 1 cut(s) 249
TauI GCSGC 3 cut(s) 53, 56, 59
TscAI CASTG 3 cut(s) 145, 202, 295
TseI GCWGC 2 cut(s) 74, 149
TspRI CASTG 3 cut(s) 145, 202, 295
VpaK11BI GGWCC 2 cut(s) 80, 269
XspI CTAG 2 cut(s) 47, 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.