Prupe.3G078600_v2.0.a1

Cytochrome C oxidase, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0004102
Physical Location & Seq
Forward (+)
5812896 .. 5816695
3800 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G078600.1

Sequence Viewer

Length: 501 bp
ATGTGGCGGCGACTGCTCTCTTCATCTCAGCTCAAGACCCTAACCCTAGCCGCCAACAGCGCCTCGGCTCCATGCCGATCGGCCACCGGACCTGCCCGCTGTCTCCTCCACAAGCCCCTTCCTCTCCTTCCTTGCTACTTCAGCACCACCTCCGATGCTGCAAAACCTGGTGTGAAGAAGGTTGAGGAGGTAATGCCCATTGCCACTGGCCACGAGCGAGAGGAGCTTGAAGCTGAACTTGAGGGAAGGGATGTTCTGGAAATCAACCATCCTGTTGGTCCTTTTGGCACAAAGGAAGCACCTGCAGTTATCAAGTCCTATTACGACAAGAGAATAGTTGGATGCCCTGGTGGTGAAGGCGAGGATGAGCATGATGTTGTGTGGTTTTGGCTGACTAAAGACGAGCCGCATGAATGTCCAGTCTGCTCACAGTACTTTGTGCTTGAAGTGGTAGGACCTGGTGGATCTCCAGACCACAGTGATGACCATGACCATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0009058 GO:0009060 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016310 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034220 GO:0034641 GO:0034654 GO:0042773 GO:0042775 GO:0042776 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990542
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
COX5B

Protein Analysis

167

Amino Acids

18.23

Weight (kDa)

5.29

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 310
Acc36I ACCTGC 2 cut(s) 100, 310
AciI CCGC 4 cut(s) 7, 51, 97, 407
AclWI GGATC 1 cut(s) 472
AcoI YGGCCR 2 cut(s) 81, 208
AcuI CTGAAG 1 cut(s) 124
AfaI GTAC 1 cut(s) 434
AgsI TTSAA 2 cut(s) 230, 446
AjnI CCWGG 3 cut(s) 166, 346, 457
AloI GAACNNNNNNTCC 2 cut(s) 237, 269
AluBI AGCT 3 cut(s) 31, 226, 233
AluI AGCT 3 cut(s) 31, 226, 233
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 1 cut(s) 472
AoxI GGCC 2 cut(s) 81, 208
ApeKI GCWGC 1 cut(s) 158
AspLEI GCGC 1 cut(s) 62
AspS9I GGNCC 3 cut(s) 89, 278, 455
AsuHPI GGTGA 1 cut(s) 365
AvaII GGWCC 3 cut(s) 89, 278, 455
BalI TGGCCA 1 cut(s) 210
BauI CACGAG 1 cut(s) 212
BbvI GCAGC 1 cut(s) 145
BccI CCATC 1 cut(s) 276
BciT130I CCWGG 3 cut(s) 168, 348, 459
BcoDI GTCTC 1 cut(s) 107
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 303
BfoI RGCGCY 1 cut(s) 63
BfuAI ACCTGC 2 cut(s) 100, 310
BisI GCNGC 4 cut(s) 8, 51, 159, 407
BlsI GCNGC 4 cut(s) 9, 52, 160, 408
BmcAI AGTACT 1 cut(s) 434
Bme1390I CCNGG 3 cut(s) 168, 348, 459
Bme18I GGWCC 3 cut(s) 89, 278, 455
BmgT120I GGNCC 3 cut(s) 89, 278, 455
BmiI GGNNCC 1 cut(s) 69
BmrFI CCNGG 3 cut(s) 168, 348, 459
BmsI GCATC 2 cut(s) 145, 332
BpmI CTGGAG 1 cut(s) 453
BpuEI CTTGAG 2 cut(s) 17, 260
BsaJI CCNNGG 2 cut(s) 63, 346
BsaWI WCCGGW 1 cut(s) 86
Bse1I ACTGG 2 cut(s) 211, 419
Bse3DI GCAATG 1 cut(s) 198
BseBI CCWGG 3 cut(s) 168, 348, 459
BseDI CCNNGG 2 cut(s) 63, 346
BseGI GGATG 4 cut(s) 256, 268, 347, 370
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 2 cut(s) 211, 419
BseRI GAGGAG 3 cut(s) 95, 200, 236
BseXI GCAGC 1 cut(s) 145
Bsh1285I CGRYCG 1 cut(s) 80
BshFI GGCC 2 cut(s) 83, 210
BsiEI CGRYCG 1 cut(s) 80
BsiSI CCGG 1 cut(s) 87
BsmAI GTCTC 1 cut(s) 107
BsnI GGCC 2 cut(s) 83, 210
Bsp143I GATC 2 cut(s) 77, 464
BspACI CCGC 4 cut(s) 7, 51, 97, 407
BspANI GGCC 2 cut(s) 83, 210
BspCNI CTCAG 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 69
BspMAI CTGCAG 1 cut(s) 307
BspMI ACCTGC 2 cut(s) 100, 310
BspPI GGATC 1 cut(s) 472
BsrDI GCAATG 1 cut(s) 198
BsrI ACTGG 2 cut(s) 211, 419
BssECI CCNNGG 2 cut(s) 63, 346
BssMI GATC 2 cut(s) 77, 464
BssSI CACGAG 1 cut(s) 212
Bst2BI CACGAG 1 cut(s) 212
Bst2UI CCWGG 3 cut(s) 168, 348, 459
Bst4CI ACNGT 2 cut(s) 432, 479
Bst6I CTCTTC 1 cut(s) 25
BstC8I GCNNGC 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 27
BstF5I GGATG 4 cut(s) 256, 268, 347, 370
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 2 cut(s) 80, 467
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 2 cut(s) 77, 464
BstMCI CGRYCG 1 cut(s) 80
BstMWI GCNNNNNNNGC 4 cut(s) 13, 59, 141, 223
BstNI CCWGG 3 cut(s) 168, 348, 459
BstSCI CCNGG 3 cut(s) 166, 346, 457
BstSFI CTRYAG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 145
BstX2I RGATCY 1 cut(s) 464
BstXI CCANNNNNNTGG 1 cut(s) 275
BstYI RGATCY 1 cut(s) 464
BsuRI GGCC 2 cut(s) 83, 210
BtsCI GGATG 4 cut(s) 256, 268, 347, 370
BtsIMutI CAGTG 3 cut(s) 204, 484, 496
BveI ACCTGC 2 cut(s) 100, 310
Cac8I GCNNGC 1 cut(s) 97
CfoI GCGC 1 cut(s) 62
Cfr13I GGNCC 3 cut(s) 89, 278, 455
CsiI ACCWGGT 2 cut(s) 166, 457
Csp6I GTAC 1 cut(s) 433
CviAII CATG 4 cut(s) 72, 371, 410, 488
CviQI GTAC 1 cut(s) 433
DdeI CTNAG 1 cut(s) 27
DpnI GATC 2 cut(s) 79, 466
DpnII GATC 2 cut(s) 77, 464
EaeI YGGCCR 2 cut(s) 81, 208
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
Eco47I GGWCC 3 cut(s) 89, 278, 455
Eco57I CTGAAG 1 cut(s) 124
EcoO109I RGGNCCY 1 cut(s) 455
EcoRII CCWGG 3 cut(s) 166, 346, 457
FaeI CATG 4 cut(s) 75, 374, 413, 491
FaiI YATR 4 cut(s) 73, 372, 411, 489
FalI AAGNNNNNCTT 2 cut(s) 222, 254
FatI CATG 4 cut(s) 71, 370, 409, 487
FauI CCCGC 1 cut(s) 104
Fnu4HI GCNGC 4 cut(s) 8, 51, 159, 407
FokI GGATG 4 cut(s) 255, 263, 354, 377
Fsp4HI GCNGC 4 cut(s) 8, 51, 159, 407
FspBI CTAG 1 cut(s) 47
GlaI GCGC 1 cut(s) 61
GluI GCNGC 4 cut(s) 8, 51, 159, 407
GsuI CTGGAG 1 cut(s) 453
HaeII RGCGCY 1 cut(s) 63
HaeIII GGCC 2 cut(s) 83, 210
HapII CCGG 1 cut(s) 87
HhaI GCGC 1 cut(s) 62
Hin1II CATG 4 cut(s) 75, 374, 413, 491
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HpaII CCGG 1 cut(s) 87
HphI GGTGA 1 cut(s) 365
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 3 cut(s) 34, 257, 470
HpyAV CCTTC 5 cut(s) 128, 137, 172, 240, 350
HpyCH4III ACNGT 2 cut(s) 432, 479
HpyCH4V TGCA 2 cut(s) 161, 305
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 59, 141, 223
HpyF3I CTNAG 1 cut(s) 27
Hsp92II CATG 4 cut(s) 75, 374, 413, 491
HspAI GCGC 1 cut(s) 60
Kzo9I GATC 2 cut(s) 77, 464
LmnI GCTCC 2 cut(s) 73, 223
Lsp1109I GCAGC 1 cut(s) 145
LweI GCATC 2 cut(s) 145, 332
MabI ACCWGGT 2 cut(s) 166, 457
MaeI CTAG 1 cut(s) 47
MalI GATC 2 cut(s) 79, 466
MboI GATC 2 cut(s) 77, 464
MboII GAAGA 2 cut(s) 12, 187
MflI RGATCY 1 cut(s) 464
MlsI TGGCCA 1 cut(s) 210
MluNI TGGCCA 1 cut(s) 210
MmeI TCCRAC 1 cut(s) 319
MnlI CCTC 9 cut(s) 73, 116, 132, 160, 178, 181, 214, 235, 355
Mox20I TGGCCA 1 cut(s) 210
MscI TGGCCA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 480
Msp20I TGGCCA 1 cut(s) 210
MspA1I CMGCKG 1 cut(s) 99
MspI CCGG 1 cut(s) 87
MspR9I CCNGG 3 cut(s) 168, 348, 459
MvaI CCWGG 3 cut(s) 168, 348, 459
MwoI GCNNNNNNNGC 4 cut(s) 13, 59, 141, 223
NdeII GATC 2 cut(s) 77, 464
NlaIII CATG 4 cut(s) 75, 374, 413, 491
NlaIV GGNNCC 1 cut(s) 69
NmeAIII GCCGAG 1 cut(s) 44
PaqCI CACCTGC 1 cut(s) 310
PkrI GCNGC 4 cut(s) 9, 52, 160, 408
Ple19I CGATCG 1 cut(s) 80
PpuMI RGGWCCY 1 cut(s) 455
Psp5II RGGWCCY 1 cut(s) 455
Psp6I CCWGG 3 cut(s) 166, 346, 457
PspGI CCWGG 3 cut(s) 166, 346, 457
PspN4I GGNNCC 1 cut(s) 69
PspPI GGNCC 3 cut(s) 89, 278, 455
PspPPI RGGWCCY 1 cut(s) 455
PstI CTGCAG 1 cut(s) 307
PsuI RGATCY 1 cut(s) 464
PvuI CGATCG 1 cut(s) 80
RsaI GTAC 1 cut(s) 434
RsaNI GTAC 1 cut(s) 433
RseI CAYNNNNRTG 1 cut(s) 480
SatI GCNGC 4 cut(s) 8, 51, 159, 407
Sau3AI GATC 2 cut(s) 77, 464
Sau96I GGNCC 3 cut(s) 89, 278, 455
ScaI AGTACT 1 cut(s) 434
ScrFI CCNGG 3 cut(s) 168, 348, 459
SexAI ACCWGGT 2 cut(s) 166, 457
SfaNI GCATC 2 cut(s) 145, 332
SfcI CTRYAG 1 cut(s) 303
SinI GGWCC 3 cut(s) 89, 278, 455
SmiMI CAYNNNNRTG 1 cut(s) 480
SmlI CTYRAG 2 cut(s) 32, 239
SmoI CTYRAG 2 cut(s) 32, 239
SsiI CCGC 4 cut(s) 7, 51, 97, 407
SspMI CTAG 1 cut(s) 47
StyD4I CCNGG 3 cut(s) 166, 346, 457
TaaI ACNGT 2 cut(s) 432, 479
TatI WGTACW 1 cut(s) 432
TauI GCSGC 3 cut(s) 10, 53, 409
TscAI CASTG 2 cut(s) 211, 484
TseI GCWGC 1 cut(s) 158
TspDTI ATGAA 2 cut(s) 12, 426
TspRI CASTG 2 cut(s) 211, 484
VpaK11BI GGWCC 3 cut(s) 89, 278, 455
XspI CTAG 1 cut(s) 47
ZrmI AGTACT 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.