AT1G80230

cytochrome c oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004102
Physical Location & Seq
Reverse (-)
30169456 .. 30171334
1879 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G80230.1

Sequence Viewer

Length: 516 bp
ATGTGGAGGAGAATCGTTTCATCGCATCTTAAATCCATCTCCGCCGTCGGGTCCTGCGCGGCTCCGTCGTGCAGGCACGCCGTCGTAGAGTCCACTCACCTTTCTCTCTCGACTCGTGCATCCTCCATTCCCGCATATTCCTCCATATTCTCTCGTTTAATCGGCTCCGCTGCAGCGGATACTGCTGTGAAGAAGCGTGTTGAAGATGTGATGCCTATTGCAACCGGTCACGAGAAAGAGGAACTACAAGCCGAATTGGAGGGGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGCCCTGGAGGTGAAGGAGAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGTCTTTTGAATGCCCTGTGTGTACACAGTACTTCAAGCTTGAAGTGGTCGGCCCTGGAGGACCTCCTGACGGACATGGTGATGACCATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009060 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016310 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0042773 GO:0042775 GO:0042776 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046872 GO:0046907 GO:0046914 GO:0050897 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990542
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
COX5B

Protein Analysis

171

Amino Acids

18.58

Weight (kDa)

5.44

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX5B PF01215 51 - 160 1.1e-17 Cytochrome c oxidase subunit Vb
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 59
AciI CCGC 5 cut(s) 42, 59, 132, 168, 176
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 2 cut(s) 445, 452
AfiI CCNNNNNNNGG 2 cut(s) 48, 491
AgeI ACCGGT 1 cut(s) 224
AgsI TTSAA 4 cut(s) 203, 431, 457, 464
AjnI CCWGG 2 cut(s) 364, 475
AjuI GAANNNNNNNTTGG 2 cut(s) 285, 317
AluBI AGCT 3 cut(s) 271, 317, 460
AluI AGCT 3 cut(s) 271, 317, 460
AoxI GGCC 2 cut(s) 296, 472
ApeKI GCWGC 2 cut(s) 170, 173
AsiGI ACCGGT 1 cut(s) 224
Asp700I GAANNNNTTC 1 cut(s) 16
AspLEI GCGC 1 cut(s) 59
AspS9I GGNCC 4 cut(s) 51, 296, 473, 482
AsuHPI GGTGA 3 cut(s) 89, 383, 512
AvaII GGWCC 2 cut(s) 51, 482
BaeI ACNNNNGTAYC 2 cut(s) 171, 204
BauI CACGAG 2 cut(s) 114, 230
BbvI GCAGC 2 cut(s) 157, 185
BccI CCATC 1 cut(s) 44
BceAI ACGGC 2 cut(s) 29, 65
BciT130I CCWGG 2 cut(s) 366, 477
BciVI GTATCC 1 cut(s) 172
BfmI CTRYAG 2 cut(s) 171, 324
BfuI GTATCC 1 cut(s) 172
BisI GCNGC 3 cut(s) 60, 171, 174
BlsI GCNGC 3 cut(s) 61, 172, 175
BmcAI AGTACT 1 cut(s) 452
Bme1390I CCNGG 2 cut(s) 366, 477
Bme18I GGWCC 2 cut(s) 51, 482
BmgT120I GGNCC 4 cut(s) 51, 296, 473, 482
BmiI GGNNCC 3 cut(s) 52, 63, 166
BmrFI CCNGG 2 cut(s) 366, 477
BmsI GCATC 3 cut(s) 34, 128, 201
BpmI CTGGAG 3 cut(s) 387, 431, 498
BsaBI GATNNNNATC 1 cut(s) 507
BsaJI CCNNGG 2 cut(s) 364, 475
BsaWI WCCGGW 1 cut(s) 224
Bsc4I CCNNNNNNNGG 2 cut(s) 48, 491
Bse118I RCCGGY 1 cut(s) 224
Bse8I GATNNNNATC 1 cut(s) 507
BseBI CCWGG 2 cut(s) 366, 477
BseDI CCNNGG 2 cut(s) 364, 475
BseGI GGATG 2 cut(s) 119, 388
BseJI GATNNNNATC 1 cut(s) 507
BseLI CCNNNNNNNGG 2 cut(s) 48, 491
BseRI GAGGAG 1 cut(s) 22
BseXI GCAGC 2 cut(s) 157, 185
BsgI GTGCAG 1 cut(s) 91
Bsh1236I CGCG 1 cut(s) 59
BshFI GGCC 2 cut(s) 298, 474
BshTI ACCGGT 1 cut(s) 224
BsiSI CCGG 1 cut(s) 225
BslI CCNNNNNNNGG 2 cut(s) 48, 491
BsmI GAATGC 1 cut(s) 437
BsnI GGCC 2 cut(s) 298, 474
Bsp1407I TGTACA 1 cut(s) 443
BspACI CCGC 5 cut(s) 42, 59, 132, 168, 176
BspANI GGCC 2 cut(s) 298, 474
BspFNI CGCG 1 cut(s) 59
BspLI GGNNCC 3 cut(s) 52, 63, 166
BspMAI CTGCAG 1 cut(s) 175
BsrFI RCCGGY 1 cut(s) 224
BsrGI TGTACA 1 cut(s) 443
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 2 cut(s) 364, 475
BssSI CACGAG 2 cut(s) 114, 230
Bst2BI CACGAG 2 cut(s) 114, 230
Bst2UI CCWGG 2 cut(s) 366, 477
Bst4CI ACNGT 1 cut(s) 450
BstAUI TGTACA 1 cut(s) 443
BstC8I GCNNGC 2 cut(s) 74, 78
BstF5I GGATG 2 cut(s) 119, 388
BstFNI CGCG 1 cut(s) 59
BstHHI GCGC 1 cut(s) 59
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 2 cut(s) 366, 477
BstSCI CCNGG 2 cut(s) 364, 475
BstSFI CTRYAG 2 cut(s) 171, 324
BstUI CGCG 1 cut(s) 59
BstV1I GCAGC 2 cut(s) 157, 185
BsuI GTATCC 1 cut(s) 172
BsuRI GGCC 2 cut(s) 298, 474
BtgZI GCGATG 1 cut(s) 6
BtsCI GGATG 2 cut(s) 119, 388
BtsIMutI CAGTG 1 cut(s) 511
Cac8I GCNNGC 2 cut(s) 74, 78
CfoI GCGC 1 cut(s) 59
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 4 cut(s) 51, 296, 473, 482
Csp6I GTAC 2 cut(s) 444, 451
CspAI ACCGGT 1 cut(s) 224
CviAII CATG 3 cut(s) 346, 389, 497
CviJI RGCY 9 cut(s) 62, 165, 251, 271, 298, 317, 409, 460, 474
CviKI_1 RGCY 9 cut(s) 62, 165, 251, 271, 298, 317, 409, 460, 474
CviQI GTAC 2 cut(s) 444, 451
EciI GGCGGA 1 cut(s) 31
Eco47I GGWCC 2 cut(s) 51, 482
Eco57I CTGAAG 1 cut(s) 312
EcoO109I RGGNCCY 3 cut(s) 51, 296, 482
EcoRII CCWGG 2 cut(s) 364, 475
FaeI CATG 3 cut(s) 349, 392, 500
FaiI YATR 6 cut(s) 136, 146, 281, 347, 390, 498
FatI CATG 3 cut(s) 345, 388, 496
FauI CCCGC 1 cut(s) 139
Fnu4HI GCNGC 3 cut(s) 60, 171, 174
FokI GGATG 2 cut(s) 106, 395
Fsp4HI GCNGC 3 cut(s) 60, 171, 174
GlaI GCGC 1 cut(s) 58
GluI GCNGC 3 cut(s) 60, 171, 174
GsuI CTGGAG 3 cut(s) 387, 431, 498
HaeIII GGCC 2 cut(s) 298, 474
HapII CCGG 1 cut(s) 225
HhaI GCGC 1 cut(s) 59
Hin1II CATG 3 cut(s) 349, 392, 500
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 3 cut(s) 12, 89, 112
HpaII CCGG 1 cut(s) 225
HphI GGTGA 3 cut(s) 89, 383, 512
Hpy166II GTNNAC 3 cut(s) 93, 444, 446
Hpy188III TCNNGA 4 cut(s) 109, 230, 290, 488
Hpy8I GTNNAC 3 cut(s) 93, 444, 446
Hpy99I CGWCG 3 cut(s) 50, 70, 86
HpyAV CCTTC 2 cut(s) 287, 368
HpyCH4III ACNGT 1 cut(s) 450
HpyCH4V TGCA 4 cut(s) 72, 119, 173, 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
Hsp92II CATG 3 cut(s) 349, 392, 500
HspAI GCGC 1 cut(s) 57
LmnI GCTCC 3 cut(s) 67, 170, 322
Lsp1109I GCAGC 2 cut(s) 157, 185
LweI GCATC 3 cut(s) 34, 128, 201
MaeIII GTNAC 1 cut(s) 227
MboII GAAGA 2 cut(s) 202, 215
MluCI AATT 1 cut(s) 254
MlyI GAGTC 2 cut(s) 98, 106
MnlI CCTC 9 cut(s) 133, 151, 232, 253, 258, 362, 373, 473, 495
MroXI GAANNNNTTC 1 cut(s) 16
MseI TTAA 2 cut(s) 30, 158
MslI CAYNNNNRTG 1 cut(s) 501
MspA1I CMGCKG 2 cut(s) 170, 176
MspI CCGG 1 cut(s) 225
MspR9I CCNGG 2 cut(s) 366, 477
Mva1269I GAATGC 1 cut(s) 437
MvaI CCWGG 2 cut(s) 366, 477
MvnI CGCG 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 182
NlaIII CATG 3 cut(s) 349, 392, 500
NlaIV GGNNCC 3 cut(s) 52, 63, 166
NmuCI GTSAC 1 cut(s) 227
PctI GAATGC 1 cut(s) 437
PdmI GAANNNNTTC 1 cut(s) 16
PfeI GAWTC 1 cut(s) 12
PinAI ACCGGT 1 cut(s) 224
PkrI GCNGC 3 cut(s) 61, 172, 175
PleI GAGTC 2 cut(s) 97, 106
PpsI GAGTC 2 cut(s) 97, 106
PpuMI RGGWCCY 2 cut(s) 51, 482
Psp5II RGGWCCY 2 cut(s) 51, 482
Psp6I CCWGG 2 cut(s) 364, 475
PspGI CCWGG 2 cut(s) 364, 475
PspN4I GGNNCC 3 cut(s) 52, 63, 166
PspPI GGNCC 4 cut(s) 51, 296, 473, 482
PspPPI RGGWCCY 2 cut(s) 51, 482
PstI CTGCAG 1 cut(s) 175
RsaI GTAC 2 cut(s) 445, 452
RsaNI GTAC 2 cut(s) 444, 451
RseI CAYNNNNRTG 1 cut(s) 501
SaqAI TTAA 2 cut(s) 30, 158
SatI GCNGC 3 cut(s) 60, 171, 174
Sau96I GGNCC 4 cut(s) 51, 296, 473, 482
ScaI AGTACT 1 cut(s) 452
SchI GAGTC 2 cut(s) 98, 106
ScrFI CCNGG 2 cut(s) 366, 477
SetI ASST 6 cut(s) 102, 273, 319, 373, 462, 487
SfaNI GCATC 3 cut(s) 34, 128, 201
SfcI CTRYAG 2 cut(s) 171, 324
SinI GGWCC 2 cut(s) 51, 482
SmiMI CAYNNNNRTG 1 cut(s) 501
Sse9I AATT 1 cut(s) 254
SsiI CCGC 5 cut(s) 42, 59, 132, 168, 176
StyD4I CCNGG 2 cut(s) 364, 475
TaaI ACNGT 1 cut(s) 450
TaqI TCGA 1 cut(s) 110
TasI AATT 1 cut(s) 254
TatI WGTACW 2 cut(s) 443, 450
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 1 cut(s) 12
Tru1I TTAA 2 cut(s) 30, 158
Tru9I TTAA 2 cut(s) 30, 158
TseFI GTSAC 1 cut(s) 227
TseI GCWGC 2 cut(s) 170, 173
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 1 cut(s) 9
TspGWI ACGGA 2 cut(s) 54, 507
VpaK11BI GGWCC 2 cut(s) 51, 482
XmnI GAANNNNTTC 1 cut(s) 16
ZrmI AGTACT 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.