Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005272.1

Orthogroup ID

OG0004102

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 3610

Gene Structure 3609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005272.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 494 bp

atgtggcggagaatcctctcttcggctcagctcagaaccctaaccctagccacctcctcctcctccgccgccgccgccccatgccgatccgccgccgccgcatcctctcccgcccgcttcttcatccccaagccccttcctcgctacttcagcaccactccttctgtggacacttctgtgaagaagaaggttgaggagataatgcccattgccaccggccacgagctagaggagcttgcagctgaagttcagggaaaggatatcctggaaatcgaccatcctgaaggtcctttcggcacaaaggaagcaccggcagttgtgaagtcctattacgacaagagaatagttggatgccctggtggtgaaggcgaggatgaacatgacgttgtgtggttttggctggagaagggcaagccacatgaatgcccagtctgctcacagtattttgtgcttgaagtggttggacccggcggatctccagaccactctgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0009058 GO:0009060 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016310 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034220 GO:0034641 GO:0034654 GO:0042773 GO:0042775 GO:0042776 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX5B

Protein Analysis

164

Amino Acids

17.78

Weight (kDa)

5.39

Isoelectric Point (pI)

51.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52710 AT1G80230 AT3G15640 AT3G15640
fragaria_vesca	FvH4_2g29600 FvH4_6g30460
malus_domestica	MD08G1145100.v1.1 MD09G1221700.v1.1 MD15G1120800.v1.1 MD17G1203700.v1.1
prunus_persica	Prupe.1G473400_v2.0.a1 Prupe.3G078600_v2.0.a1
pyrus_communis	pycom15g10900 pycom17g20730
rosa_chinensis	RchiOBHm_Chr2g0136811 RchiOBHm_Chr6g0298591
rosa_laevigata	RLG00000011501 RLG00000019579
rosa_multiflora	Rmu_sc0001299.1_g000014 Rmu_sc0001534.1_g000012 Rmu_sc0004500.1_g000013 Rmu_sc0005272.1_g000001
rosa_roxburghii	Rroxscaffold_2G00107970 Rroxscaffold_7G00169510
rosa_rugosa	Rorug02G0334000 Rorug06G0281200
rosa_samantha	Rh2BG391100 Rh6AG392900 Rh6BG400600 Rh6CG406500 Rh6DG393200
rosa_wichuraiana	Rw2G031430 Rw6G034340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	81, 481
AcoI	YGGCCR	1 cut(s)	217
AcuI	CTGAAG	3 cut(s)	133, 264, 303
AfiI	CCNNNNNNNGG	1 cut(s)	22
AgsI	TTSAA	1 cut(s)	455
AjnI	CCWGG	2 cut(s)	264, 355
AleI	CACNNNNGTG	1 cut(s)	176
AluBI	AGCT	4 cut(s)	31, 226, 235, 242
AluI	AGCT	4 cut(s)	31, 226, 235, 242
AlwI	GGATC	2 cut(s)	81, 481
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	1 cut(s)	239
AspS9I	GGNCC	2 cut(s)	287, 464
AsuC2I	CCSGG	1 cut(s)	468
AsuHPI	GGTGA	1 cut(s)	374
AvaII	GGWCC	2 cut(s)	287, 464
BarI	GAAGNNNNNNTAC	2 cut(s)	314, 346
BauI	CACGAG	1 cut(s)	221
BbvI	GCAGC	1 cut(s)	251
BccI	CCATC	1 cut(s)	285
BciT130I	CCWGG	2 cut(s)	266, 357
BcnI	CCSGG	1 cut(s)	468
BfaI	CTAG	2 cut(s)	47, 227
BisI	GCNGC	7 cut(s)	69, 72, 75, 93, 96, 99, 240
BlpI	GCTNAGC	1 cut(s)	27
BlsI	GCNGC	7 cut(s)	70, 73, 76, 94, 97, 100, 241
Bme1390I	CCNGG	3 cut(s)	266, 357, 468
Bme18I	GGWCC	2 cut(s)	287, 464
BmgT120I	GGNCC	2 cut(s)	287, 464
BmiI	GGNNCC	1 cut(s)	466
BmrFI	CCNGG	3 cut(s)	266, 357, 468
BmrI	ACTGGG	1 cut(s)	422
BmsI	GCATC	2 cut(s)	110, 341
BmuI	ACTGGG	1 cut(s)	422
BpmI	CTGGAG	2 cut(s)	422, 462
Bpu1102I	GCTNAGC	1 cut(s)	27
BpuMI	CCSGG	1 cut(s)	468
BsaJI	CCNNGG	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse118I	RCCGGY	2 cut(s)	215, 310
Bse1I	ACTGG	1 cut(s)	428
Bse3DI	GCAATG	1 cut(s)	207
BseBI	CCWGG	2 cut(s)	266, 357
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	5 cut(s)	101, 123, 277, 356, 379
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMI	GCAATG	1 cut(s)	207
BseMII	CTCAG	2 cut(s)	41, 46
BseNI	ACTGG	1 cut(s)	428
BseRI	GAGGAG	5 cut(s)	46, 49, 52, 209, 245
BseXI	GCAGC	1 cut(s)	251
BshFI	GGCC	1 cut(s)	219
BsiSI	CCGG	3 cut(s)	216, 311, 468
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmI	GAATGC	1 cut(s)	428
BsnI	GGCC	1 cut(s)	219
Bsp143I	GATC	2 cut(s)	86, 473
Bsp1720I	GCTNAGC	1 cut(s)	27
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	2 cut(s)	40, 45
BspLI	GGNNCC	1 cut(s)	466
BspPI	GGATC	2 cut(s)	81, 481
BsrDI	GCAATG	1 cut(s)	207
BsrFI	RCCGGY	2 cut(s)	215, 310
BsrI	ACTGG	1 cut(s)	428
BssAI	RCCGGY	2 cut(s)	215, 310
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	2 cut(s)	86, 473
BssSI	CACGAG	1 cut(s)	221
Bst2BI	CACGAG	1 cut(s)	221
Bst2UI	CCWGG	2 cut(s)	266, 357
Bst4CI	ACNGT	1 cut(s)	441
Bst6I	CTCTTC	1 cut(s)	25
BstC8I	GCNNGC	3 cut(s)	115, 237, 413
BstDEI	CTNAG	2 cut(s)	27, 32
BstF5I	GGATG	5 cut(s)	101, 123, 277, 356, 379
BstKTI	GATC	2 cut(s)	89, 476
BstMBI	GATC	2 cut(s)	86, 473
BstMWI	GCNNNNNNNGC	5 cut(s)	74, 98, 150, 232, 432
BstNI	CCWGG	2 cut(s)	266, 357
BstSCI	CCNGG	3 cut(s)	264, 355, 466
BstV1I	GCAGC	1 cut(s)	251
BstX2I	RGATCY	1 cut(s)	473
BstYI	RGATCY	1 cut(s)	473
BsuRI	GGCC	1 cut(s)	219
BtsCI	GGATG	5 cut(s)	101, 123, 277, 356, 379
Cac8I	GCNNGC	3 cut(s)	115, 237, 413
Cfr10I	RCCGGY	2 cut(s)	215, 310
Cfr13I	GGNCC	2 cut(s)	287, 464
CviAII	CATG	3 cut(s)	81, 380, 419
DdeI	CTNAG	2 cut(s)	27, 32
DpnI	GATC	2 cut(s)	88, 475
DpnII	GATC	2 cut(s)	86, 473
EaeI	YGGCCR	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
EciI	GGCGGA	4 cut(s)	22, 55, 79, 486
Eco32I	GATATC	1 cut(s)	262
Eco47I	GGWCC	2 cut(s)	287, 464
Eco57I	CTGAAG	3 cut(s)	133, 264, 303
EcoO109I	RGGNCCY	1 cut(s)	287
EcoRII	CCWGG	2 cut(s)	264, 355
EcoRV	GATATC	1 cut(s)	262
FaeI	CATG	3 cut(s)	84, 383, 422
FaiI	YATR	3 cut(s)	82, 381, 420
FatI	CATG	3 cut(s)	80, 379, 418
FauI	CCCGC	2 cut(s)	118, 122
Fnu4HI	GCNGC	7 cut(s)	69, 72, 75, 93, 96, 99, 240
FokI	GGATG	5 cut(s)	88, 110, 264, 363, 386
Fsp4HI	GCNGC	7 cut(s)	69, 72, 75, 93, 96, 99, 240
FspBI	CTAG	2 cut(s)	47, 227
GluI	GCNGC	7 cut(s)	69, 72, 75, 93, 96, 99, 240
GsuI	CTGGAG	2 cut(s)	422, 462
HaeIII	GGCC	1 cut(s)	219
HapII	CCGG	3 cut(s)	216, 311, 468
Hin1II	CATG	3 cut(s)	84, 383, 422
HinfI	GANTC	1 cut(s)	12
HpaII	CCGG	3 cut(s)	216, 311, 468
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	2 cut(s)	35, 490
Hpy188III	TCNNGA	2 cut(s)	281, 479
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	6 cut(s)	146, 171, 181, 278, 359, 400
HpyCH4III	ACNGT	1 cut(s)	441
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	1 cut(s)	239
HpyF10VI	GCNNNNNNNGC	5 cut(s)	74, 98, 150, 232, 432
HpyF3I	CTNAG	2 cut(s)	27, 32
HpySE526I	ACGT	1 cut(s)	384
Hsp92II	CATG	3 cut(s)	84, 383, 422
Kzo9I	GATC	2 cut(s)	86, 473
LmnI	GCTCC	1 cut(s)	232
Lsp1109I	GCAGC	1 cut(s)	251
LweI	GCATC	2 cut(s)	110, 341
MaeI	CTAG	2 cut(s)	47, 227
MaeII	ACGT	1 cut(s)	384
MalI	GATC	2 cut(s)	88, 475
MboI	GATC	2 cut(s)	86, 473
MboII	GAAGA	4 cut(s)	12, 112, 193, 196
MflI	RGATCY	1 cut(s)	473
MmeI	TCCRAC	2 cut(s)	328, 442
MslI	CAYNNNNRTG	3 cut(s)	176, 421, 489
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	3 cut(s)	216, 311, 468
MspR9I	CCNGG	3 cut(s)	266, 357, 468
Mva1269I	GAATGC	1 cut(s)	428
MvaI	CCWGG	2 cut(s)	266, 357
MwoI	GCNNNNNNNGC	5 cut(s)	74, 98, 150, 232, 432
NciI	CCSGG	1 cut(s)	468
NdeII	GATC	2 cut(s)	86, 473
NlaIII	CATG	3 cut(s)	84, 383, 422
NlaIV	GGNNCC	1 cut(s)	466
OliI	CACNNNNGTG	1 cut(s)	176
PctI	GAATGC	1 cut(s)	428
PfeI	GAWTC	1 cut(s)	12
PfoI	TCCNGGA	1 cut(s)	264
PkrI	GCNGC	7 cut(s)	70, 73, 76, 94, 97, 100, 241
PpuMI	RGGWCCY	1 cut(s)	287
Psp5II	RGGWCCY	1 cut(s)	287
Psp6I	CCWGG	2 cut(s)	264, 355
PspGI	CCWGG	2 cut(s)	264, 355
PspN4I	GGNNCC	1 cut(s)	466
PspPI	GGNCC	2 cut(s)	287, 464
PspPPI	RGGWCCY	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	473
PvuII	CAGCTG	1 cut(s)	242
RseI	CAYNNNNRTG	3 cut(s)	176, 421, 489
SatI	GCNGC	7 cut(s)	69, 72, 75, 93, 96, 99, 240
Sau3AI	GATC	2 cut(s)	86, 473
Sau96I	GGNCC	2 cut(s)	287, 464
ScrFI	CCNGG	3 cut(s)	266, 357, 468
SetI	ASST	8 cut(s)	33, 56, 192, 228, 237, 244, 289, 387
SfaNI	GCATC	2 cut(s)	110, 341
SinI	GGWCC	2 cut(s)	287, 464
SmiMI	CAYNNNNRTG	3 cut(s)	176, 421, 489
SspMI	CTAG	2 cut(s)	47, 227
StyD4I	CCNGG	3 cut(s)	264, 355, 466
TaaI	ACNGT	1 cut(s)	441
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	1 cut(s)	273
TauI	GCSGC	6 cut(s)	71, 74, 77, 95, 98, 101
TfiI	GAWTC	1 cut(s)	12
TseI	GCWGC	1 cut(s)	239
TspDTI	ATGAA	3 cut(s)	112, 390, 435
VpaK11BI	GGWCC	2 cut(s)	287, 464
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163
XspI	CTAG	2 cut(s)	47, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.