Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001299.1

Orthogroup ID

OG0004102

Physical Location & Seq

Genomic Coordinates Forward (+)

66130 .. 69424

Gene Structure 3295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001299.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atgtggcggagaatcctctcttcggctcagctcagaaccctaaccctagccgcctcctcctcctcctccgccgccgccgccccatgccgatccgccgccgccgcatcctctcccgcccgcttcttcatccccaagccccttcctcgctacttcagcaccactccttctgtggacacttctgtgaagaagaaggttgaggagataatgcccattgccaccggccacgagctagaggagcttgcagctgaagttcagggaaaggatatcctggaaatcgaccatcccgaaggtcctttcggcacaaaggaagcgcctgcagttgtgaagtcctattacgacaagagaatagttggatgccctggtggtgaaggcgaggatgaacatgatgttgtgtggttttggctggagaagggcaagccacacgaatgcccagtctgctcacagtattttgtgcttgaagtggttggacccggcggatctccagaccactctgatgatcatcactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0009058 GO:0009060 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016310 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034220 GO:0034641 GO:0034654 GO:0042773 GO:0042775 GO:0042776 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX5B

Protein Analysis

168

Amino Acids

18.23

Weight (kDa)

5.46

Isoelectric Point (pI)

51.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52710 AT1G80230 AT3G15640 AT3G15640
fragaria_vesca	FvH4_2g29600 FvH4_6g30460
malus_domestica	MD08G1145100.v1.1 MD09G1221700.v1.1 MD15G1120800.v1.1 MD17G1203700.v1.1
prunus_persica	Prupe.1G473400_v2.0.a1 Prupe.3G078600_v2.0.a1
pyrus_communis	pycom15g10900 pycom17g20730
rosa_chinensis	RchiOBHm_Chr2g0136811 RchiOBHm_Chr6g0298591
rosa_laevigata	RLG00000011501 RLG00000019579
rosa_multiflora	Rmu_sc0001299.1_g000014 Rmu_sc0001534.1_g000012 Rmu_sc0004500.1_g000013 Rmu_sc0005272.1_g000001
rosa_roxburghii	Rroxscaffold_2G00107970 Rroxscaffold_7G00169510
rosa_rugosa	Rorug02G0334000 Rorug06G0281200
rosa_samantha	Rh2BG391100 Rh6AG392900 Rh6BG400600 Rh6CG406500 Rh6DG393200
rosa_wichuraiana	Rw2G031430 Rw6G034340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	84, 484
AcoI	YGGCCR	1 cut(s)	220
AcuI	CTGAAG	2 cut(s)	136, 267
AfiI	CCNNNNNNNGG	1 cut(s)	22
AgsI	TTSAA	1 cut(s)	458
AjnI	CCWGG	2 cut(s)	267, 358
AleI	CACNNNNGTG	1 cut(s)	179
AluBI	AGCT	4 cut(s)	31, 229, 238, 245
AluI	AGCT	4 cut(s)	31, 229, 238, 245
AlwI	GGATC	2 cut(s)	84, 484
AoxI	GGCC	1 cut(s)	220
ApeKI	GCWGC	1 cut(s)	242
ArsI	GACNNNNNNTTYG	2 cut(s)	417, 449
AspLEI	GCGC	1 cut(s)	313
AspS9I	GGNCC	2 cut(s)	290, 467
AsuC2I	CCSGG	1 cut(s)	471
AsuHPI	GGTGA	1 cut(s)	377
AvaII	GGWCC	2 cut(s)	290, 467
BarI	GAAGNNNNNNTAC	2 cut(s)	317, 349
BauI	CACGAG	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	254
BccI	CCATC	1 cut(s)	288
BciT130I	CCWGG	2 cut(s)	269, 360
BclI	TGATCA	1 cut(s)	496
BcnI	CCSGG	1 cut(s)	471
BfaI	CTAG	2 cut(s)	47, 230
BfmI	CTRYAG	1 cut(s)	315
BfoI	RGCGCY	1 cut(s)	314
BisI	GCNGC	8 cut(s)	51, 72, 75, 78, 96, 99, 102, 243
BlpI	GCTNAGC	1 cut(s)	27
BlsI	GCNGC	8 cut(s)	52, 73, 76, 79, 97, 100, 103, 244
Bme1390I	CCNGG	3 cut(s)	269, 360, 471
Bme18I	GGWCC	2 cut(s)	290, 467
BmgT120I	GGNCC	2 cut(s)	290, 467
BmiI	GGNNCC	1 cut(s)	469
BmrFI	CCNGG	3 cut(s)	269, 360, 471
BmrI	ACTGGG	1 cut(s)	425
BmsI	GCATC	2 cut(s)	113, 344
BmuI	ACTGGG	1 cut(s)	425
BpmI	CTGGAG	2 cut(s)	425, 465
Bpu1102I	GCTNAGC	1 cut(s)	27
BpuMI	CCSGG	1 cut(s)	471
BsaBI	GATNNNNATC	1 cut(s)	498
BsaJI	CCNNGG	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	431
Bse3DI	GCAATG	1 cut(s)	210
Bse8I	GATNNNNATC	1 cut(s)	498
BseBI	CCWGG	2 cut(s)	269, 360
BseDI	CCNNGG	1 cut(s)	358
BseGI	GGATG	5 cut(s)	104, 126, 280, 359, 382
BseJI	GATNNNNATC	1 cut(s)	498
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	2 cut(s)	41, 46
BseNI	ACTGG	1 cut(s)	431
BseRI	GAGGAG	6 cut(s)	46, 49, 52, 55, 212, 248
BseXI	GCAGC	1 cut(s)	254
BshFI	GGCC	1 cut(s)	222
BsiSI	CCGG	2 cut(s)	219, 471
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmI	GAATGC	1 cut(s)	431
BsnI	GGCC	1 cut(s)	222
Bsp143I	GATC	3 cut(s)	89, 476, 496
Bsp1720I	GCTNAGC	1 cut(s)	27
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	2 cut(s)	40, 45
BspLI	GGNNCC	1 cut(s)	469
BspMAI	CTGCAG	1 cut(s)	319
BspPI	GGATC	2 cut(s)	84, 484
BsrDI	GCAATG	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	431
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	358
BssMI	GATC	3 cut(s)	89, 476, 496
BssSI	CACGAG	1 cut(s)	224
Bst2BI	CACGAG	1 cut(s)	224
Bst2UI	CCWGG	2 cut(s)	269, 360
Bst4CI	ACNGT	1 cut(s)	444
Bst6I	CTCTTC	1 cut(s)	25
BstC8I	GCNNGC	4 cut(s)	118, 240, 315, 416
BstDEI	CTNAG	2 cut(s)	27, 32
BstF5I	GGATG	5 cut(s)	104, 126, 280, 359, 382
BstH2I	RGCGCY	1 cut(s)	314
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	3 cut(s)	92, 479, 499
BstMBI	GATC	3 cut(s)	89, 476, 496
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 101, 153, 235, 435
BstNI	CCWGG	2 cut(s)	269, 360
BstSCI	CCNGG	3 cut(s)	267, 358, 469
BstSFI	CTRYAG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	254
BstX2I	RGATCY	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	476
BsuRI	GGCC	1 cut(s)	222
BtsCI	GGATG	5 cut(s)	104, 126, 280, 359, 382
Cac8I	GCNNGC	4 cut(s)	118, 240, 315, 416
CfoI	GCGC	1 cut(s)	313
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	290, 467
CviAII	CATG	2 cut(s)	84, 383
DdeI	CTNAG	2 cut(s)	27, 32
DpnI	GATC	3 cut(s)	91, 478, 498
DpnII	GATC	3 cut(s)	89, 476, 496
EaeI	YGGCCR	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
EciI	GGCGGA	4 cut(s)	22, 58, 82, 489
Eco32I	GATATC	1 cut(s)	265
Eco47I	GGWCC	2 cut(s)	290, 467
Eco57I	CTGAAG	2 cut(s)	136, 267
EcoO109I	RGGNCCY	1 cut(s)	290
EcoRII	CCWGG	2 cut(s)	267, 358
EcoRV	GATATC	1 cut(s)	265
FaeI	CATG	2 cut(s)	87, 386
FaiI	YATR	2 cut(s)	85, 384
FatI	CATG	2 cut(s)	83, 382
FauI	CCCGC	2 cut(s)	121, 125
FbaI	TGATCA	1 cut(s)	496
Fnu4HI	GCNGC	8 cut(s)	51, 72, 75, 78, 96, 99, 102, 243
FokI	GGATG	5 cut(s)	91, 113, 267, 366, 389
Fsp4HI	GCNGC	8 cut(s)	51, 72, 75, 78, 96, 99, 102, 243
FspBI	CTAG	2 cut(s)	47, 230
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	8 cut(s)	51, 72, 75, 78, 96, 99, 102, 243
GsuI	CTGGAG	2 cut(s)	425, 465
HaeII	RGCGCY	1 cut(s)	314
HaeIII	GGCC	1 cut(s)	222
HapII	CCGG	2 cut(s)	219, 471
HhaI	GCGC	1 cut(s)	313
Hin1II	CATG	2 cut(s)	87, 386
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HinfI	GANTC	1 cut(s)	12
HpaII	CCGG	2 cut(s)	219, 471
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	2 cut(s)	35, 493
Hpy188III	TCNNGA	2 cut(s)	284, 482
Hpy8I	GTNNAC	1 cut(s)	172
HpyAV	CCTTC	6 cut(s)	149, 174, 184, 281, 362, 403
HpyCH4III	ACNGT	1 cut(s)	444
HpyCH4V	TGCA	2 cut(s)	242, 317
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 101, 153, 235, 435
HpyF3I	CTNAG	2 cut(s)	27, 32
Hsp92II	CATG	2 cut(s)	87, 386
HspAI	GCGC	1 cut(s)	311
Ksp22I	TGATCA	1 cut(s)	496
Kzo9I	GATC	3 cut(s)	89, 476, 496
LmnI	GCTCC	1 cut(s)	235
Lsp1109I	GCAGC	1 cut(s)	254
LweI	GCATC	2 cut(s)	113, 344
MaeI	CTAG	2 cut(s)	47, 230
MalI	GATC	3 cut(s)	91, 478, 498
MboI	GATC	3 cut(s)	89, 476, 496
MboII	GAAGA	4 cut(s)	12, 115, 196, 199
MflI	RGATCY	1 cut(s)	476
MmeI	TCCRAC	2 cut(s)	331, 445
MslI	CAYNNNNRTG	3 cut(s)	179, 424, 492
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	2 cut(s)	219, 471
MspR9I	CCNGG	3 cut(s)	269, 360, 471
Mva1269I	GAATGC	1 cut(s)	431
MvaI	CCWGG	2 cut(s)	269, 360
MwoI	GCNNNNNNNGC	5 cut(s)	77, 101, 153, 235, 435
NciI	CCSGG	1 cut(s)	471
NdeII	GATC	3 cut(s)	89, 476, 496
NlaIII	CATG	2 cut(s)	87, 386
NlaIV	GGNNCC	1 cut(s)	469
OliI	CACNNNNGTG	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PctI	GAATGC	1 cut(s)	431
PfeI	GAWTC	1 cut(s)	12
PfoI	TCCNGGA	1 cut(s)	267
PkrI	GCNGC	8 cut(s)	52, 73, 76, 79, 97, 100, 103, 244
PpuMI	RGGWCCY	1 cut(s)	290
Psp5II	RGGWCCY	1 cut(s)	290
Psp6I	CCWGG	2 cut(s)	267, 358
PspGI	CCWGG	2 cut(s)	267, 358
PspN4I	GGNNCC	1 cut(s)	469
PspPI	GGNCC	2 cut(s)	290, 467
PspPPI	RGGWCCY	1 cut(s)	290
PstI	CTGCAG	1 cut(s)	319
PsuI	RGATCY	1 cut(s)	476
PvuII	CAGCTG	1 cut(s)	245
RseI	CAYNNNNRTG	3 cut(s)	179, 424, 492
SatI	GCNGC	8 cut(s)	51, 72, 75, 78, 96, 99, 102, 243
Sau3AI	GATC	3 cut(s)	89, 476, 496
Sau96I	GGNCC	2 cut(s)	290, 467
ScrFI	CCNGG	3 cut(s)	269, 360, 471
SetI	ASST	6 cut(s)	33, 195, 231, 240, 247, 292
SfaNI	GCATC	2 cut(s)	113, 344
SfcI	CTRYAG	1 cut(s)	315
SinI	GGWCC	2 cut(s)	290, 467
SmiMI	CAYNNNNRTG	3 cut(s)	179, 424, 492
SspMI	CTAG	2 cut(s)	47, 230
StyD4I	CCNGG	3 cut(s)	267, 358, 469
TaaI	ACNGT	1 cut(s)	444
TaqI	TCGA	1 cut(s)	276
TauI	GCSGC	7 cut(s)	53, 74, 77, 80, 98, 101, 104
TfiI	GAWTC	1 cut(s)	12
TseI	GCWGC	1 cut(s)	242
TspDTI	ATGAA	2 cut(s)	115, 393
VpaK11BI	GGWCC	2 cut(s)	290, 467
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166
XspI	CTAG	2 cut(s)	47, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.