FvH4_6g30460

Cytochrome C oxidase, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004102
Physical Location & Seq
Reverse (-)
23578002 .. 23581225
3224 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g30460.t1

Sequence Viewer

Length: 492 bp
ATGTGGCGGAGAATCCTCTCTTCGGCTCAGCTCCGAACCCTAACCCTTGCCGCCTCCTCCTCCTCCTCCGCCGCCGCCCCATGCCGATCCGCCGCCACCGCCCGCTCCTTCATCCCCAAGCCCCTTCCTCGCTACTTCAGCGCCACTCCTTCCGTGGACACTGCTGTGAAGAAGAAGGTTGAGGAGATTATGCCCATTGCGACCGGCCACGAGCTTGAGGAGCTCGCAGCTGAAATTCAGGGAAAGGATATCCTGGAAATCGACCACCCCGAAGGCCCTTTCGGCACAAAGGAAGAACCTGCAGTTGTGAAGTCCTATTACGACAAGAGAATAGTTGGATGCCCCGGTGGTGAAGGCGAGGATGAACATGATGTTGTGTGGTTTTGGCTGGAGAAGAACAAGCCACATGAATGCCCGGTCTGCTCACAGTATTTTGTGCTTGAAGTGGTTGGACCCGGCGGATCTCCAGACCACTCTGATGATCATCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0009058 GO:0009060 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016310 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034220 GO:0034641 GO:0034654 GO:0042773 GO:0042775 GO:0042776 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990542
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
COX5B

Protein Analysis

164

Amino Acids

17.87

Weight (kDa)

5.33

Isoelectric Point (pI)

56.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX5B PF01215 66 - 155 3.5e-17 Cytochrome c oxidase subunit Vb
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 307
AccBSI CCGCTC 1 cut(s) 105
AclWI GGATC 2 cut(s) 81, 469
AcoI YGGCCR 1 cut(s) 205
AcsI RAATTY 1 cut(s) 234
AcuI CTGAAG 1 cut(s) 121
AfiI CCNNNNNNNGG 1 cut(s) 22
AgsI TTSAA 1 cut(s) 443
AjnI CCWGG 1 cut(s) 252
AleI CACNNNNGTG 1 cut(s) 164
AluBI AGCT 4 cut(s) 31, 214, 223, 230
AluI AGCT 4 cut(s) 31, 214, 223, 230
Alw21I GWGCWC 1 cut(s) 225
AlwI GGATC 2 cut(s) 81, 469
AoxI GGCC 2 cut(s) 205, 274
ApeKI GCWGC 1 cut(s) 227
ApoI RAATTY 1 cut(s) 234
AspLEI GCGC 1 cut(s) 143
AspS9I GGNCC 2 cut(s) 275, 452
AsuC2I CCSGG 3 cut(s) 345, 416, 456
AsuHPI GGTGA 1 cut(s) 362
AvaII GGWCC 1 cut(s) 452
BanII GRGCYC 1 cut(s) 225
BarI GAAGNNNNNNTAC 2 cut(s) 302, 334
BauI CACGAG 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 225
BbvI GCAGC 1 cut(s) 239
BciT130I CCWGG 1 cut(s) 254
BclI TGATCA 1 cut(s) 481
BcnI CCSGG 3 cut(s) 345, 416, 456
BfmI CTRYAG 1 cut(s) 300
BfoI RGCGCY 1 cut(s) 144
BfuAI ACCTGC 1 cut(s) 307
BglI GCCNNNNNGGC 1 cut(s) 282
BisI GCNGC 5 cut(s) 51, 72, 75, 93, 228
BlpI GCTNAGC 1 cut(s) 27
BlsI GCNGC 5 cut(s) 52, 73, 76, 94, 229
Bme1390I CCNGG 4 cut(s) 254, 345, 416, 456
Bme18I GGWCC 1 cut(s) 452
BmgT120I GGNCC 2 cut(s) 275, 452
BmiI GGNNCC 1 cut(s) 454
BmrFI CCNGG 4 cut(s) 254, 345, 416, 456
BmsI GCATC 1 cut(s) 329
BpmI CTGGAG 2 cut(s) 410, 450
Bpu1102I GCTNAGC 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 236
BpuMI CCSGG 3 cut(s) 345, 416, 456
BsaBI GATNNNNATC 1 cut(s) 483
BsaJI CCNNGG 2 cut(s) 153, 343
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse118I RCCGGY 1 cut(s) 203
Bse3DI GCAATG 1 cut(s) 195
Bse8I GATNNNNATC 1 cut(s) 483
BseBI CCWGG 1 cut(s) 254
BseDI CCNNGG 2 cut(s) 153, 343
BseGI GGATG 3 cut(s) 111, 344, 367
BseJI GATNNNNATC 1 cut(s) 483
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMI GCAATG 1 cut(s) 195
BseMII CTCAG 1 cut(s) 41
BseRI GAGGAG 6 cut(s) 46, 49, 52, 55, 197, 233
BseXI GCAGC 1 cut(s) 239
Bsh1285I CGRYCG 1 cut(s) 204
BshFI GGCC 2 cut(s) 207, 276
BsiEI CGRYCG 1 cut(s) 204
BsiHKAI GWGCWC 1 cut(s) 225
BsiSI CCGG 4 cut(s) 204, 345, 416, 456
BslI CCNNNNNNNGG 1 cut(s) 22
BsmI GAATGC 1 cut(s) 416
BsnI GGCC 2 cut(s) 207, 276
Bsp1286I GDGCHC 1 cut(s) 225
Bsp143I GATC 3 cut(s) 86, 461, 481
Bsp1720I GCTNAGC 1 cut(s) 27
BspANI GGCC 2 cut(s) 207, 276
BspCNI CTCAG 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 454
BspMAI CTGCAG 1 cut(s) 304
BspMI ACCTGC 1 cut(s) 307
BspPI GGATC 2 cut(s) 81, 469
BsrBI CCGCTC 1 cut(s) 105
BsrDI GCAATG 1 cut(s) 195
BsrFI RCCGGY 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 2 cut(s) 153, 343
BssMI GATC 3 cut(s) 86, 461, 481
BssSI CACGAG 1 cut(s) 209
Bst2BI CACGAG 1 cut(s) 209
Bst2UI CCWGG 1 cut(s) 254
Bst4CI ACNGT 1 cut(s) 429
Bst6I CTCTTC 1 cut(s) 25
BstC8I GCNNGC 2 cut(s) 103, 225
BstDEI CTNAG 1 cut(s) 27
BstDSI CCRYGG 1 cut(s) 153
BstF5I GGATG 3 cut(s) 111, 344, 367
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 3 cut(s) 89, 464, 484
BstMBI GATC 3 cut(s) 86, 461, 481
BstMCI CGRYCG 1 cut(s) 204
BstMWI GCNNNNNNNGC 5 cut(s) 98, 138, 220, 282, 420
BstNI CCWGG 1 cut(s) 254
BstSCI CCNGG 4 cut(s) 252, 343, 414, 454
BstSFI CTRYAG 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 239
BstX2I RGATCY 1 cut(s) 461
BstYI RGATCY 1 cut(s) 461
BsuRI GGCC 2 cut(s) 207, 276
BtgI CCRYGG 1 cut(s) 153
BtsCI GGATG 3 cut(s) 111, 344, 367
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 159
BveI ACCTGC 1 cut(s) 307
Cac8I GCNNGC 2 cut(s) 103, 225
CfoI GCGC 1 cut(s) 143
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 2 cut(s) 275, 452
CviAII CATG 3 cut(s) 81, 368, 407
DdeI CTNAG 1 cut(s) 27
DpnI GATC 3 cut(s) 88, 463, 483
DpnII GATC 3 cut(s) 86, 461, 481
EaeI YGGCCR 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
EciI GGCGGA 4 cut(s) 22, 58, 79, 474
Ecl136II GAGCTC 1 cut(s) 223
Eco24I GRGCYC 1 cut(s) 225
Eco32I GATATC 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 452
Eco53kI GAGCTC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 121
EcoICRI GAGCTC 1 cut(s) 223
EcoO109I RGGNCCY 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 252
EcoRV GATATC 1 cut(s) 250
EcoT38I GRGCYC 1 cut(s) 225
FaeI CATG 3 cut(s) 84, 371, 410
FaiI YATR 4 cut(s) 82, 191, 369, 408
FatI CATG 3 cut(s) 80, 367, 406
FauI CCCGC 1 cut(s) 110
FbaI TGATCA 1 cut(s) 481
Fnu4HI GCNGC 5 cut(s) 51, 72, 75, 93, 228
FokI GGATG 3 cut(s) 98, 351, 374
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 5 cut(s) 51, 72, 75, 93, 228
GlaI GCGC 1 cut(s) 142
GluI GCNGC 5 cut(s) 51, 72, 75, 93, 228
GsuI CTGGAG 2 cut(s) 410, 450
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 2 cut(s) 207, 276
HapII CCGG 4 cut(s) 204, 345, 416, 456
HhaI GCGC 1 cut(s) 143
Hin1II CATG 3 cut(s) 84, 371, 410
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HinfI GANTC 1 cut(s) 12
HpaII CCGG 4 cut(s) 204, 345, 416, 456
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 35, 478
Hpy188III TCNNGA 1 cut(s) 467
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 6 cut(s) 118, 134, 159, 169, 266, 347
HpyCH4III ACNGT 1 cut(s) 429
HpyCH4V TGCA 1 cut(s) 302
HpyF10VI GCNNNNNNNGC 5 cut(s) 98, 138, 220, 282, 420
HpyF3I CTNAG 1 cut(s) 27
Hsp92II CATG 3 cut(s) 84, 371, 410
HspAI GCGC 1 cut(s) 141
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 3 cut(s) 86, 461, 481
LmnI GCTCC 3 cut(s) 36, 110, 220
Lsp1109I GCAGC 1 cut(s) 239
LweI GCATC 1 cut(s) 329
MalI GATC 3 cut(s) 88, 463, 483
MbiI CCGCTC 1 cut(s) 105
MboI GATC 3 cut(s) 86, 461, 481
MboII GAAGA 5 cut(s) 12, 181, 184, 305, 406
MflI RGATCY 1 cut(s) 461
MhlI GDGCHC 1 cut(s) 225
MluCI AATT 1 cut(s) 234
MmeI TCCRAC 2 cut(s) 316, 430
MslI CAYNNNNRTG 3 cut(s) 164, 409, 477
MspA1I CMGCKG 1 cut(s) 230
MspI CCGG 4 cut(s) 204, 345, 416, 456
MspR9I CCNGG 4 cut(s) 254, 345, 416, 456
Mva1269I GAATGC 1 cut(s) 416
MvaI CCWGG 1 cut(s) 254
MwoI GCNNNNNNNGC 5 cut(s) 98, 138, 220, 282, 420
NciI CCSGG 3 cut(s) 345, 416, 456
NdeII GATC 3 cut(s) 86, 461, 481
NlaIII CATG 3 cut(s) 84, 371, 410
NlaIV GGNNCC 1 cut(s) 454
OliI CACNNNNGTG 1 cut(s) 164
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PctI GAATGC 1 cut(s) 416
PfeI GAWTC 1 cut(s) 12
PfoI TCCNGGA 1 cut(s) 252
PkrI GCNGC 5 cut(s) 52, 73, 76, 94, 229
Psp124BI GAGCTC 1 cut(s) 225
Psp6I CCWGG 1 cut(s) 252
PspGI CCWGG 1 cut(s) 252
PspN4I GGNNCC 1 cut(s) 454
PspPI GGNCC 2 cut(s) 275, 452
PstI CTGCAG 1 cut(s) 304
PsuI RGATCY 1 cut(s) 461
PvuII CAGCTG 1 cut(s) 230
RseI CAYNNNNRTG 3 cut(s) 164, 409, 477
SacI GAGCTC 1 cut(s) 225
SatI GCNGC 5 cut(s) 51, 72, 75, 93, 228
Sau3AI GATC 3 cut(s) 86, 461, 481
Sau96I GGNCC 2 cut(s) 275, 452
ScrFI CCNGG 4 cut(s) 254, 345, 416, 456
SduI GDGCHC 1 cut(s) 225
SetI ASST 6 cut(s) 33, 180, 216, 225, 232, 301
SfaNI GCATC 1 cut(s) 329
SfcI CTRYAG 1 cut(s) 300
SinI GGWCC 1 cut(s) 452
SmiMI CAYNNNNRTG 3 cut(s) 164, 409, 477
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 1 cut(s) 234
SstI GAGCTC 1 cut(s) 225
StyD4I CCNGG 4 cut(s) 252, 343, 414, 454
TaaI ACNGT 1 cut(s) 429
TaqI TCGA 1 cut(s) 261
TasI AATT 1 cut(s) 234
TauI GCSGC 4 cut(s) 53, 74, 77, 95
TfiI GAWTC 1 cut(s) 12
TscAI CASTG 1 cut(s) 166
TseI GCWGC 1 cut(s) 227
TspDTI ATGAA 3 cut(s) 100, 378, 423
TspGWI ACGGA 1 cut(s) 142
TspRI CASTG 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 452
XapI RAATTY 1 cut(s) 234
XcmI CCANNNNNNNNNTGG 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.