Rorug06G0281200

Cytochrome C oxidase, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004102
Physical Location & Seq
Reverse (-)
42881355 .. 42882137
783 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0281200.1

Sequence Viewer

Length: 783 bp
ATGTTGTTGACTGGACGAGATCTTTGCAATGTTTTTCTTGCGGGTGTTTTCTTGTTATTGCTTAGTTGTAGAGTCATTTCAGGTGTCGAGAGTGATATCAACTGCTTGAGAAGTATAAAAGCAACATTGGAGGACCCTTTAGGCATGTTAACCTCTTCATGGGATTTTAACAATAAGACCGAAGGTTTCGTCTGTAACTTTCTGGGAATCGAGTGTTGGCACCCTCATGAAAGCAAAGTTATAAATATCAAGCTTGGGGATTTGGGACTCAAAGGCCAGTTTCCTCGCGGCGTTGTGAATTGTACAAGCTTAACAGGCTTAGATCTTTCAAGCAACGGCCTCAGTGGATCACTTCCCAGTGATATCATAAAATTGATCCCTTTCGTTACGTCGCTTGATCTCTCGTCCAACAGCTTCTCAGGGCCAATTCCCCGGAATATCTCCAATTGTACTTTTCTCAATGTCCTTAAACTTGACAACAACAAGTTCACGGGTCAGATTCCTGCAGAACTTGGTCAGCTCAGTAGGCTTAAAACATTTAGCGTGGCCAACAATCAACTGTCTGGGCCAGTCCCCTACTTCAACAATGGCACAAACAATTTGGACTATGCAGGCAATCCTGGACTTTGTGGCGGTCCTTTGGGAAGTTGCCAGGCAGCTGCAAAGAACAAGTTGTCAAATGATTTAGTGAGGGTTTTCAAGTCTTACACTGTAGTCATGTTGGGAGCACTCGGTTTTGGTATTGGTTTTGTTTCCTCTTTTTCTTTTTTCGTCTTTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0009058 GO:0009060 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016310 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034220 GO:0034641 GO:0034654 GO:0042773 GO:0042775 GO:0042776 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990542
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
COX5B

Protein Analysis

260

Amino Acids

27.92

Weight (kDa)

8.37

Isoelectric Point (pI)

31.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 30 - 73 8.8e-06 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 242
AccB1I GGYRCC 1 cut(s) 219
AccII CGCG 1 cut(s) 288
AciI CCGC 3 cut(s) 41, 288, 633
AclWI GGATC 2 cut(s) 355, 370
AcoI YGGCCR 1 cut(s) 546
AfaI GTAC 2 cut(s) 304, 451
AfiI CCNNNNNNNGG 1 cut(s) 159
AgsI TTSAA 3 cut(s) 330, 583, 700
AjnI CCWGG 2 cut(s) 619, 651
AjuI GAANNNNNNNTTGG 2 cut(s) 199, 231
AluBI AGCT 5 cut(s) 253, 309, 414, 520, 659
AluI AGCT 5 cut(s) 253, 309, 414, 520, 659
Alw21I GWGCWC 1 cut(s) 730
AlwI GGATC 2 cut(s) 355, 370
AoxI GGCC 5 cut(s) 274, 337, 422, 546, 566
ApeKI GCWGC 2 cut(s) 656, 659
ArsI GACNNNNNNTTYG 3 cut(s) 38, 174, 206
AspS9I GGNCC 4 cut(s) 133, 422, 566, 635
AsuC2I CCSGG 1 cut(s) 433
AvaII GGWCC 2 cut(s) 133, 635
BalI TGGCCA 1 cut(s) 548
BanI GGYRCC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 730
BbvI GCAGC 2 cut(s) 646, 668
BceAI ACGGC 1 cut(s) 352
BcgI CGANNNNNNTGC 2 cut(s) 6, 40
BciT130I CCWGG 2 cut(s) 621, 653
BcnI CCSGG 1 cut(s) 433
BfmI CTRYAG 2 cut(s) 504, 711
BglII AGATCT 2 cut(s) 19, 322
BisI GCNGC 3 cut(s) 289, 657, 660
BlsI GCNGC 3 cut(s) 290, 658, 661
Bme1390I CCNGG 3 cut(s) 433, 621, 653
Bme18I GGWCC 2 cut(s) 133, 635
BmgT120I GGNCC 4 cut(s) 133, 422, 566, 635
BmiI GGNNCC 2 cut(s) 135, 221
BmrFI CCNGG 3 cut(s) 433, 621, 653
BmrI ACTGGG 1 cut(s) 351
BmuI ACTGGG 1 cut(s) 351
BpuEI CTTGAG 1 cut(s) 127
BpuMI CCSGG 1 cut(s) 433
BsaJI CCNNGG 1 cut(s) 431
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse1I ACTGG 4 cut(s) 16, 277, 357, 569
Bse3DI GCAATG 1 cut(s) 34
BseBI CCWGG 2 cut(s) 621, 653
BseDI CCNNGG 1 cut(s) 431
BseLI CCNNNNNNNGG 1 cut(s) 159
BseMI GCAATG 1 cut(s) 34
BseMII CTCAG 3 cut(s) 355, 432, 535
BseNI ACTGG 4 cut(s) 16, 277, 357, 569
BseXI GCAGC 2 cut(s) 646, 668
Bsh1236I CGCG 1 cut(s) 288
BshFI GGCC 5 cut(s) 276, 339, 424, 548, 568
BshNI GGYRCC 1 cut(s) 219
BsiHKAI GWGCWC 1 cut(s) 730
BsiSI CCGG 1 cut(s) 433
BslFI GGGAC 2 cut(s) 279, 557
BslI CCNNNNNNNGG 1 cut(s) 159
BsmFI GGGAC 2 cut(s) 279, 557
BsnI GGCC 5 cut(s) 276, 339, 424, 548, 568
Bsp1286I GDGCHC 1 cut(s) 730
Bsp1407I TGTACA 1 cut(s) 302
Bsp143I GATC 5 cut(s) 19, 322, 347, 375, 397
BspACI CCGC 3 cut(s) 41, 288, 633
BspANI GGCC 5 cut(s) 276, 339, 424, 548, 568
BspCNI CTCAG 3 cut(s) 354, 431, 534
BspFNI CGCG 1 cut(s) 288
BspHI TCATGA 1 cut(s) 226
BspLI GGNNCC 2 cut(s) 135, 221
BspMAI CTGCAG 1 cut(s) 508
BspPI GGATC 2 cut(s) 355, 370
BspT107I GGYRCC 1 cut(s) 219
BsrDI GCAATG 1 cut(s) 34
BsrGI TGTACA 1 cut(s) 302
BsrI ACTGG 4 cut(s) 16, 277, 357, 569
BssECI CCNNGG 1 cut(s) 431
BssMI GATC 5 cut(s) 19, 322, 347, 375, 397
Bst2UI CCWGG 2 cut(s) 621, 653
Bst4CI ACNGT 2 cut(s) 561, 712
Bst6I CTCTTC 1 cut(s) 160
BstAUI TGTACA 1 cut(s) 302
BstC8I GCNNGC 1 cut(s) 613
BstDEI CTNAG 5 cut(s) 62, 319, 341, 418, 521
BstFNI CGCG 1 cut(s) 288
BstKTI GATC 5 cut(s) 22, 325, 350, 378, 400
BstMBI GATC 5 cut(s) 19, 322, 347, 375, 397
BstMWI GCNNNNNNNGC 2 cut(s) 315, 526
BstNI CCWGG 2 cut(s) 621, 653
BstNSI RCATGY 1 cut(s) 148
BstSCI CCNGG 3 cut(s) 431, 619, 651
BstSFI CTRYAG 2 cut(s) 504, 711
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 2 cut(s) 646, 668
BstX2I RGATCY 2 cut(s) 19, 322
BstYI RGATCY 2 cut(s) 19, 322
BsuRI GGCC 5 cut(s) 276, 339, 424, 548, 568
BtsIMutI CAGTG 3 cut(s) 349, 364, 708
Cac8I GCNNGC 1 cut(s) 613
CciI TCATGA 1 cut(s) 226
Cfr13I GGNCC 4 cut(s) 133, 422, 566, 635
Csp6I GTAC 2 cut(s) 303, 450
CviAII CATG 4 cut(s) 145, 159, 227, 718
CviQI GTAC 2 cut(s) 303, 450
DdeI CTNAG 5 cut(s) 62, 319, 341, 418, 521
DpnI GATC 5 cut(s) 21, 324, 349, 377, 399
DpnII GATC 5 cut(s) 19, 322, 347, 375, 397
EaeI YGGCCR 1 cut(s) 546
Eam1104I CTCTTC 1 cut(s) 160
EarI CTCTTC 1 cut(s) 160
Eco32I GATATC 2 cut(s) 97, 364
Eco47I GGWCC 2 cut(s) 133, 635
EcoO109I RGGNCCY 1 cut(s) 133
EcoRII CCWGG 2 cut(s) 619, 651
EcoRV GATATC 2 cut(s) 97, 364
FaeI CATG 4 cut(s) 148, 162, 230, 721
FaiI YATR 8 cut(s) 116, 146, 160, 228, 242, 368, 609, 719
FaqI GGGAC 2 cut(s) 279, 557
FatI CATG 4 cut(s) 144, 158, 226, 717
FauI CCCGC 1 cut(s) 34
Fnu4HI GCNGC 3 cut(s) 289, 657, 660
Fsp4HI GCNGC 3 cut(s) 289, 657, 660
GluI GCNGC 3 cut(s) 289, 657, 660
HaeIII GGCC 5 cut(s) 276, 339, 424, 548, 568
HapII CCGG 1 cut(s) 433
Hin1II CATG 4 cut(s) 148, 162, 230, 721
HincII GTYRAC 2 cut(s) 9, 150
HindII GTYRAC 2 cut(s) 9, 150
HindIII AAGCTT 2 cut(s) 251, 307
HinfI GANTC 4 cut(s) 72, 207, 267, 499
HpaI GTTAAC 1 cut(s) 150
HpaII CCGG 1 cut(s) 433
Hpy166II GTNNAC 3 cut(s) 9, 150, 489
Hpy188I TCNGA 1 cut(s) 498
Hpy188III TCNNGA 2 cut(s) 88, 227
Hpy8I GTNNAC 3 cut(s) 9, 150, 489
Hpy99I CGWCG 1 cut(s) 394
HpyAV CCTTC 1 cut(s) 176
HpyCH4III ACNGT 2 cut(s) 561, 712
HpyCH4IV ACGT 1 cut(s) 389
HpyCH4V TGCA 4 cut(s) 27, 506, 611, 662
HpyF10VI GCNNNNNNNGC 2 cut(s) 315, 526
HpyF3I CTNAG 5 cut(s) 62, 319, 341, 418, 521
HpySE526I ACGT 1 cut(s) 389
Hsp92II CATG 4 cut(s) 148, 162, 230, 721
KspAI GTTAAC 1 cut(s) 150
Kzo9I GATC 5 cut(s) 19, 322, 347, 375, 397
LmnI GCTCC 1 cut(s) 725
Lsp1109I GCAGC 2 cut(s) 646, 668
MaeII ACGT 1 cut(s) 389
MaeIII GTNAC 2 cut(s) 194, 385
MalI GATC 5 cut(s) 21, 324, 349, 377, 399
MboI GATC 5 cut(s) 19, 322, 347, 375, 397
MboII GAAGA 1 cut(s) 147
MfeI CAATTG 1 cut(s) 445
MflI RGATCY 2 cut(s) 19, 322
MhlI GDGCHC 1 cut(s) 730
MlsI TGGCCA 1 cut(s) 548
MluCI AATT 5 cut(s) 298, 371, 426, 445, 598
MluNI TGGCCA 1 cut(s) 548
MlyI GAGTC 2 cut(s) 81, 261
MmeI TCCRAC 1 cut(s) 432
MnlI CCTC 7 cut(s) 124, 163, 234, 294, 350, 684, 766
Mox20I TGGCCA 1 cut(s) 548
MscI TGGCCA 1 cut(s) 548
MseI TTAA 5 cut(s) 149, 168, 311, 468, 531
MslI CAYNNNNRTG 1 cut(s) 225
Msp20I TGGCCA 1 cut(s) 548
MspA1I CMGCKG 1 cut(s) 659
MspI CCGG 1 cut(s) 433
MspR9I CCNGG 3 cut(s) 433, 621, 653
MunI CAATTG 1 cut(s) 445
MvaI CCWGG 2 cut(s) 621, 653
MvnI CGCG 1 cut(s) 288
MwoI GCNNNNNNNGC 2 cut(s) 315, 526
NciI CCSGG 1 cut(s) 433
NdeII GATC 5 cut(s) 19, 322, 347, 375, 397
NlaIII CATG 4 cut(s) 148, 162, 230, 721
NlaIV GGNNCC 2 cut(s) 135, 221
NspI RCATGY 1 cut(s) 148
PagI TCATGA 1 cut(s) 226
PfeI GAWTC 2 cut(s) 207, 499
PfoI TCCNGGA 1 cut(s) 619
PkrI GCNGC 3 cut(s) 290, 658, 661
PleI GAGTC 2 cut(s) 80, 261
PpsI GAGTC 2 cut(s) 80, 261
PpuMI RGGWCCY 1 cut(s) 133
PsiI TTATAA 1 cut(s) 242
Psp5II RGGWCCY 1 cut(s) 133
Psp6I CCWGG 2 cut(s) 619, 651
PspGI CCWGG 2 cut(s) 619, 651
PspN4I GGNNCC 2 cut(s) 135, 221
PspPI GGNCC 4 cut(s) 133, 422, 566, 635
PspPPI RGGWCCY 1 cut(s) 133
PstI CTGCAG 1 cut(s) 508
PsuI RGATCY 2 cut(s) 19, 322
PvuII CAGCTG 1 cut(s) 659
RsaI GTAC 2 cut(s) 304, 451
RsaNI GTAC 2 cut(s) 303, 450
RseI CAYNNNNRTG 1 cut(s) 225
SaqAI TTAA 5 cut(s) 149, 168, 311, 468, 531
SatI GCNGC 3 cut(s) 289, 657, 660
Sau3AI GATC 5 cut(s) 19, 322, 347, 375, 397
Sau96I GGNCC 4 cut(s) 133, 422, 566, 635
SchI GAGTC 2 cut(s) 81, 261
ScrFI CCNGG 3 cut(s) 433, 621, 653
SduI GDGCHC 1 cut(s) 730
SetI ASST 9 cut(s) 85, 155, 187, 255, 311, 392, 416, 522, 661
SfcI CTRYAG 2 cut(s) 504, 711
SinI GGWCC 2 cut(s) 133, 635
SmiMI CAYNNNNRTG 1 cut(s) 225
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
Sse9I AATT 5 cut(s) 298, 371, 426, 445, 598
SsiI CCGC 3 cut(s) 41, 288, 633
StyD4I CCNGG 3 cut(s) 431, 619, 651
TaaI ACNGT 2 cut(s) 561, 712
TaiI ACGT 1 cut(s) 392
TaqI TCGA 3 cut(s) 87, 210, 778
TaqII GACCGA 1 cut(s) 194
TasI AATT 5 cut(s) 298, 371, 426, 445, 598
TatI WGTACW 2 cut(s) 302, 449
TauI GCSGC 1 cut(s) 291
TfiI GAWTC 2 cut(s) 207, 499
Tru1I TTAA 5 cut(s) 149, 168, 311, 468, 531
Tru9I TTAA 5 cut(s) 149, 168, 311, 468, 531
TscAI CASTG 3 cut(s) 349, 364, 715
TseI GCWGC 2 cut(s) 656, 659
TspDTI ATGAA 2 cut(s) 147, 243
TspRI CASTG 3 cut(s) 349, 364, 715
VpaK11BI GGWCC 2 cut(s) 133, 635
XceI RCATGY 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.