MD09G1221700.v1.1

Cytochrome C oxidase, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0004102
Physical Location & Seq
Reverse (-)
25590814 .. 25595176
4363 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1221700.v1.1.491

Sequence Viewer

Length: 498 bp
ATGTGGCGGAGACTGCTCTCTTCCTCTCAGCTCAAAACCTTAACCCTAGCCGCCGCTGGTACTGCAGCAGCTCCATGCCGATCGGCTGCTGGACCCGCCCGCTCTCTCCTCCACAAGCCCCTCCCTCTCCTCCCTAGCTACTTCAGCACCACCGCCGAAGCTGCGACGACTGGTGTGAAGAAGGTTGAGGAGGTACAGCCCATTGCCACCGGCCACGAGCGAGAGGAGCTTGAAGCTGAACTTGAGGGAAGGGATGTTCTGGAAATCAACCATCCTATTGGTCCTTTTGGCACAAAGGAAGAACCTGCGGTTGTCAAGTCCTACTACAACAAGAGAATAGTTGGGTGCCCTGGTGGTGAAGGCGAGGATGAGCATGATGTTGTGTGGTTTTGGCTGGAGAAAGGCAAACCACATGAATGCCCAGTCTGCACACAATACTTTGTGCTTGAAGTGGTTGGACCCGGTGGATCTCCAGACCATTCCGATGACCATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0009058 GO:0009060 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016310 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034220 GO:0034641 GO:0034654 GO:0042773 GO:0042775 GO:0042776 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990542
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
COX5B

Protein Analysis

166

Amino Acids

17.93

Weight (kDa)

5.45

Isoelectric Point (pI)

49.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX5B PF01215 69 - 157 2.7e-19 Cytochrome c oxidase subunit Vb
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 313
AccB1I GGYRCC 1 cut(s) 345
AccBSI CCGCTC 1 cut(s) 102
AciI CCGC 7 cut(s) 7, 51, 54, 96, 100, 153, 308
AclWI GGATC 1 cut(s) 475
AcoI YGGCCR 1 cut(s) 211
AcuI CTGAAG 1 cut(s) 127
AfaI GTAC 2 cut(s) 61, 195
AgsI TTSAA 2 cut(s) 233, 449
AjnI CCWGG 1 cut(s) 349
AloI GAACNNNNNNTCC 2 cut(s) 240, 272
AluBI AGCT 6 cut(s) 31, 71, 138, 161, 229, 236
AluI AGCT 6 cut(s) 31, 71, 138, 161, 229, 236
Alw26I GTCTC 1 cut(s) 4
AlwI GGATC 1 cut(s) 475
AoxI GGCC 1 cut(s) 211
ApeKI GCWGC 4 cut(s) 65, 68, 86, 161
AspS9I GGNCC 3 cut(s) 92, 281, 458
AsuC2I CCSGG 1 cut(s) 462
AsuHPI GGTGA 1 cut(s) 368
AvaII GGWCC 3 cut(s) 92, 281, 458
BaeGI GKGCMC 1 cut(s) 350
BanI GGYRCC 1 cut(s) 345
BauI CACGAG 1 cut(s) 215
BbvI GCAGC 4 cut(s) 73, 77, 80, 148
BccI CCATC 1 cut(s) 279
BciT130I CCWGG 1 cut(s) 351
BcnI CCSGG 1 cut(s) 462
BcoDI GTCTC 1 cut(s) 4
BfaI CTAG 2 cut(s) 47, 135
BfmI CTRYAG 1 cut(s) 63
BfuAI ACCTGC 1 cut(s) 313
BisI GCNGC 6 cut(s) 51, 54, 66, 69, 87, 162
BlsI GCNGC 6 cut(s) 52, 55, 67, 70, 88, 163
Bme1390I CCNGG 2 cut(s) 351, 462
Bme18I GGWCC 3 cut(s) 92, 281, 458
BmgT120I GGNCC 3 cut(s) 92, 281, 458
BmiI GGNNCC 3 cut(s) 94, 347, 460
BmrFI CCNGG 2 cut(s) 351, 462
BmrI ACTGGG 1 cut(s) 416
BmuI ACTGGG 1 cut(s) 416
BpmI CTGGAG 2 cut(s) 416, 456
BpuEI CTTGAG 1 cut(s) 263
BpuMI CCSGG 1 cut(s) 462
BsaBI GATNNNNATC 1 cut(s) 489
BsaJI CCNNGG 1 cut(s) 349
Bse118I RCCGGY 1 cut(s) 209
Bse1I ACTGG 2 cut(s) 175, 422
Bse3DI GCAATG 1 cut(s) 201
Bse8I GATNNNNATC 1 cut(s) 489
BseBI CCWGG 1 cut(s) 351
BseDI CCNNGG 1 cut(s) 349
BseGI GGATG 3 cut(s) 259, 271, 373
BseJI GATNNNNATC 1 cut(s) 489
BseMI GCAATG 1 cut(s) 201
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 2 cut(s) 175, 422
BseRI GAGGAG 4 cut(s) 98, 119, 203, 239
BseSI GKGCMC 1 cut(s) 350
BseXI GCAGC 4 cut(s) 73, 77, 80, 148
BsgI GTGCAG 1 cut(s) 412
Bsh1285I CGRYCG 1 cut(s) 83
BshFI GGCC 1 cut(s) 213
BshNI GGYRCC 1 cut(s) 345
BsiEI CGRYCG 1 cut(s) 83
BsiSI CCGG 2 cut(s) 210, 462
BsmAI GTCTC 1 cut(s) 4
BsmI GAATGC 1 cut(s) 422
BsnI GGCC 1 cut(s) 213
Bsp1286I GDGCHC 1 cut(s) 350
Bsp143I GATC 2 cut(s) 80, 467
BspACI CCGC 7 cut(s) 7, 51, 54, 96, 100, 153, 308
BspANI GGCC 1 cut(s) 213
BspCNI CTCAG 1 cut(s) 40
BspLI GGNNCC 3 cut(s) 94, 347, 460
BspMAI CTGCAG 1 cut(s) 67
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 1 cut(s) 475
BspT107I GGYRCC 1 cut(s) 345
BsrBI CCGCTC 1 cut(s) 102
BsrDI GCAATG 1 cut(s) 201
BsrFI RCCGGY 1 cut(s) 209
BsrI ACTGG 2 cut(s) 175, 422
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 1 cut(s) 349
BssMI GATC 2 cut(s) 80, 467
BssSI CACGAG 1 cut(s) 215
Bst2BI CACGAG 1 cut(s) 215
Bst2UI CCWGG 1 cut(s) 351
Bst6I CTCTTC 1 cut(s) 25
BstC8I GCNNGC 1 cut(s) 100
BstDEI CTNAG 1 cut(s) 27
BstF5I GGATG 3 cut(s) 259, 271, 373
BstKTI GATC 2 cut(s) 83, 470
BstMAI GTCTC 1 cut(s) 4
BstMBI GATC 2 cut(s) 80, 467
BstMCI CGRYCG 1 cut(s) 83
BstMWI GCNNNNNNNGC 7 cut(s) 13, 62, 95, 144, 161, 226, 426
BstNI CCWGG 1 cut(s) 351
BstSCI CCNGG 2 cut(s) 349, 460
BstSFI CTRYAG 1 cut(s) 63
BstSLI GKGCMC 1 cut(s) 350
BstV1I GCAGC 4 cut(s) 73, 77, 80, 148
BstX2I RGATCY 1 cut(s) 467
BstXI CCANNNNNNTGG 1 cut(s) 278
BstYI RGATCY 1 cut(s) 467
BsuRI GGCC 1 cut(s) 213
BtsCI GGATG 3 cut(s) 259, 271, 373
BtsIMutI CAGTG 1 cut(s) 493
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 100
Cfr10I RCCGGY 1 cut(s) 209
Cfr13I GGNCC 3 cut(s) 92, 281, 458
Csp6I GTAC 2 cut(s) 60, 194
CviAII CATG 3 cut(s) 75, 374, 413
CviQI GTAC 2 cut(s) 60, 194
DdeI CTNAG 1 cut(s) 27
DpnI GATC 2 cut(s) 82, 469
DpnII GATC 2 cut(s) 80, 467
EaeI YGGCCR 1 cut(s) 211
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
EciI GGCGGA 1 cut(s) 22
Eco47I GGWCC 3 cut(s) 92, 281, 458
Eco57I CTGAAG 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 349
FaeI CATG 3 cut(s) 78, 377, 416
FaiI YATR 3 cut(s) 76, 375, 414
FalI AAGNNNNNCTT 2 cut(s) 225, 257
FatI CATG 3 cut(s) 74, 373, 412
FauI CCCGC 2 cut(s) 103, 107
Fnu4HI GCNGC 6 cut(s) 51, 54, 66, 69, 87, 162
FokI GGATG 3 cut(s) 258, 266, 380
Fsp4HI GCNGC 6 cut(s) 51, 54, 66, 69, 87, 162
FspBI CTAG 2 cut(s) 47, 135
GluI GCNGC 6 cut(s) 51, 54, 66, 69, 87, 162
GsuI CTGGAG 2 cut(s) 416, 456
HaeIII GGCC 1 cut(s) 213
HapII CCGG 2 cut(s) 210, 462
Hin1II CATG 3 cut(s) 78, 377, 416
HpaII CCGG 2 cut(s) 210, 462
HphI GGTGA 1 cut(s) 368
Hpy188I TCNGA 1 cut(s) 484
Hpy188III TCNNGA 2 cut(s) 260, 473
Hpy99I CGWCG 1 cut(s) 169
HpyAV CCTTC 3 cut(s) 175, 243, 353
HpyCH4V TGCA 2 cut(s) 65, 429
HpyF10VI GCNNNNNNNGC 7 cut(s) 13, 62, 95, 144, 161, 226, 426
HpyF3I CTNAG 1 cut(s) 27
Hsp92II CATG 3 cut(s) 78, 377, 416
Kzo9I GATC 2 cut(s) 80, 467
LmnI GCTCC 2 cut(s) 76, 226
Lsp1109I GCAGC 4 cut(s) 73, 77, 80, 148
MaeI CTAG 2 cut(s) 47, 135
MalI GATC 2 cut(s) 82, 469
MbiI CCGCTC 1 cut(s) 102
MboI GATC 2 cut(s) 80, 467
MboII GAAGA 3 cut(s) 12, 190, 311
MflI RGATCY 1 cut(s) 467
MhlI GDGCHC 1 cut(s) 350
MmeI TCCRAC 1 cut(s) 436
MseI TTAA 1 cut(s) 41
MslI CAYNNNNRTG 2 cut(s) 415, 483
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 2 cut(s) 210, 462
MspR9I CCNGG 2 cut(s) 351, 462
Mva1269I GAATGC 1 cut(s) 422
MvaI CCWGG 1 cut(s) 351
MwoI GCNNNNNNNGC 7 cut(s) 13, 62, 95, 144, 161, 226, 426
NciI CCSGG 1 cut(s) 462
NdeII GATC 2 cut(s) 80, 467
NlaIII CATG 3 cut(s) 78, 377, 416
NlaIV GGNNCC 3 cut(s) 94, 347, 460
PctI GAATGC 1 cut(s) 422
PkrI GCNGC 6 cut(s) 52, 55, 67, 70, 88, 163
Ple19I CGATCG 1 cut(s) 83
Psp6I CCWGG 1 cut(s) 349
PspGI CCWGG 1 cut(s) 349
PspN4I GGNNCC 3 cut(s) 94, 347, 460
PspPI GGNCC 3 cut(s) 92, 281, 458
PstI CTGCAG 1 cut(s) 67
PsuI RGATCY 1 cut(s) 467
PvuI CGATCG 1 cut(s) 83
RsaI GTAC 2 cut(s) 61, 195
RsaNI GTAC 2 cut(s) 60, 194
RseI CAYNNNNRTG 2 cut(s) 415, 483
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 6 cut(s) 51, 54, 66, 69, 87, 162
Sau3AI GATC 2 cut(s) 80, 467
Sau96I GGNCC 3 cut(s) 92, 281, 458
ScrFI CCNGG 2 cut(s) 351, 462
SduI GDGCHC 1 cut(s) 350
SfcI CTRYAG 1 cut(s) 63
SinI GGWCC 3 cut(s) 92, 281, 458
SmiMI CAYNNNNRTG 2 cut(s) 415, 483
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
SsiI CCGC 7 cut(s) 7, 51, 54, 96, 100, 153, 308
SspMI CTAG 2 cut(s) 47, 135
StyD4I CCNGG 2 cut(s) 349, 460
TauI GCSGC 2 cut(s) 53, 56
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TseI GCWGC 4 cut(s) 65, 68, 86, 161
TspDTI ATGAA 1 cut(s) 429
VpaK11BI GGWCC 3 cut(s) 92, 281, 458
XspI CTAG 2 cut(s) 47, 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.