Rh6DG393200

Cytochrome C oxidase, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0004102
Physical Location & Seq
Reverse (-)
58494081 .. 58495438
1358 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG393200.1

Sequence Viewer

Length: 339 bp
ATGTGGAGGCGAGTGGTGTCTTGTTCGACCTCGGCTCAATTCCAAGCCCTAGGCTCATGCAGATCTTGTCCATCTCTCAACCTCACCCGTCGATTTCTAATCTCCTCAGCATCCACCACGCCTTCCACTCCCCCGCCGTTTCAGCGATCCCCCAATCCCGCCTCCGGTTTGAAGAAGAAGGTTGAGGATATTATGCCCATTGCTACCGGTCACGAGCGCGAGGAACTTCAGGCTGAGCTTCAGGGGAGGGACATTCTTGAGATCAATCATCCAGTCGGCCCTTTTGGTACTAAGCTGGAAGTTGTTGGCCCAGGAGGTCCTCCAGATGGTCATCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0009058 GO:0009060 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016310 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034220 GO:0034641 GO:0034654 GO:0042773 GO:0042775 GO:0042776 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990542
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
COX5B

Protein Analysis

112

Amino Acids

12.1

Weight (kDa)

8.61

Isoelectric Point (pI)

71.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 219
AciI CCGC 2 cut(s) 134, 159
AclWI GGATC 1 cut(s) 141
AcuI CTGAAG 2 cut(s) 212, 224
AfaI GTAC 1 cut(s) 289
AfiI CCNNNNNNNGG 2 cut(s) 164, 326
AgeI ACCGGT 1 cut(s) 206
AgsI TTSAA 1 cut(s) 172
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 2 cut(s) 238, 295
AluI AGCT 2 cut(s) 238, 295
AlwI GGATC 1 cut(s) 141
AoxI GGCC 2 cut(s) 277, 307
AsiGI ACCGGT 1 cut(s) 206
AspA2I CCTAGG 1 cut(s) 49
AspLEI GCGC 1 cut(s) 219
AspS9I GGNCC 3 cut(s) 278, 308, 317
AsuHPI GGTGA 1 cut(s) 76
AvaII GGWCC 1 cut(s) 317
AvrII CCTAGG 1 cut(s) 49
BauI CACGAG 1 cut(s) 212
BbvCI CCTCAGC 1 cut(s) 106
BccI CCATC 2 cut(s) 79, 320
BceAI ACGGC 1 cut(s) 121
BciT130I CCWGG 1 cut(s) 312
BfaI CTAG 1 cut(s) 50
BglII AGATCT 1 cut(s) 62
BlnI CCTAGG 1 cut(s) 49
BlpI GCTNAGC 1 cut(s) 234
Bme1390I CCNGG 1 cut(s) 312
Bme18I GGWCC 1 cut(s) 317
BmgT120I GGNCC 3 cut(s) 278, 308, 317
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 1 cut(s) 119
BpmI CTGGAG 1 cut(s) 306
Bpu10I CCTNAGC 1 cut(s) 106
Bpu1102I GCTNAGC 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 278
BsaBI GATNNNNATC 1 cut(s) 330
BsaJI CCNNGG 3 cut(s) 30, 49, 310
BsaWI WCCGGW 2 cut(s) 164, 206
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 326
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 272
Bse3DI GCAATG 1 cut(s) 198
Bse8I GATNNNNATC 1 cut(s) 330
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 3 cut(s) 30, 49, 310
BseGI GGATG 2 cut(s) 110, 268
BseJI GATNNNNATC 1 cut(s) 330
BseLI CCNNNNNNNGG 2 cut(s) 164, 326
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 2 cut(s) 120, 225
BseNI ACTGG 1 cut(s) 272
BseRI GAGGAG 1 cut(s) 94
Bsh1236I CGCG 1 cut(s) 219
BshFI GGCC 2 cut(s) 279, 309
BshTI ACCGGT 1 cut(s) 206
BsiSI CCGG 2 cut(s) 165, 207
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 2 cut(s) 164, 326
BsmFI GGGAC 1 cut(s) 263
BsnI GGCC 2 cut(s) 279, 309
Bsp143I GATC 3 cut(s) 62, 146, 261
Bsp1720I GCTNAGC 1 cut(s) 234
BspACI CCGC 2 cut(s) 134, 159
BspANI GGCC 2 cut(s) 279, 309
BspCNI CTCAG 2 cut(s) 119, 226
BspFNI CGCG 1 cut(s) 219
BspPI GGATC 1 cut(s) 141
BsrDI GCAATG 1 cut(s) 198
BsrFI RCCGGY 1 cut(s) 206
BsrI ACTGG 1 cut(s) 272
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 3 cut(s) 30, 49, 310
BssMI GATC 3 cut(s) 62, 146, 261
BssSI CACGAG 1 cut(s) 212
BssT1I CCWWGG 1 cut(s) 49
Bst2BI CACGAG 1 cut(s) 212
Bst2UI CCWGG 1 cut(s) 312
BstDEI CTNAG 3 cut(s) 106, 234, 291
BstF5I GGATG 2 cut(s) 110, 268
BstFNI CGCG 1 cut(s) 219
BstHHI GCGC 1 cut(s) 219
BstKTI GATC 3 cut(s) 65, 149, 264
BstMBI GATC 3 cut(s) 62, 146, 261
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstNI CCWGG 1 cut(s) 312
BstSCI CCNGG 1 cut(s) 310
BstUI CGCG 1 cut(s) 219
BstX2I RGATCY 1 cut(s) 62
BstYI RGATCY 1 cut(s) 62
BsuRI GGCC 2 cut(s) 279, 309
BtsCI GGATG 2 cut(s) 110, 268
CfoI GCGC 1 cut(s) 219
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 3 cut(s) 278, 308, 317
Csp6I GTAC 1 cut(s) 288
CspAI ACCGGT 1 cut(s) 206
CviAII CATG 1 cut(s) 57
CviJI RGCY 8 cut(s) 35, 47, 54, 233, 238, 279, 295, 309
CviKI_1 RGCY 8 cut(s) 35, 47, 54, 233, 238, 279, 295, 309
CviQI GTAC 1 cut(s) 288
DdeI CTNAG 3 cut(s) 106, 234, 291
DpnI GATC 3 cut(s) 64, 148, 263
DpnII GATC 3 cut(s) 62, 146, 261
Eco130I CCWWGG 1 cut(s) 49
Eco47I GGWCC 1 cut(s) 317
Eco57I CTGAAG 2 cut(s) 212, 224
EcoO109I RGGNCCY 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 49
FaeI CATG 1 cut(s) 60
FaiI YATR 2 cut(s) 58, 194
FaqI GGGAC 1 cut(s) 263
FatI CATG 1 cut(s) 56
FauI CCCGC 2 cut(s) 141, 166
FokI GGATG 2 cut(s) 97, 255
FspBI CTAG 1 cut(s) 50
GlaI GCGC 1 cut(s) 218
GsuI CTGGAG 1 cut(s) 306
HaeIII GGCC 2 cut(s) 279, 309
HapII CCGG 2 cut(s) 165, 207
HhaI GCGC 1 cut(s) 219
Hin1II CATG 1 cut(s) 60
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HpaII CCGG 2 cut(s) 165, 207
HphI GGTGA 1 cut(s) 76
Hpy188III TCNNGA 3 cut(s) 212, 257, 323
Hpy99I CGWCG 1 cut(s) 93
HpyAV CCTTC 2 cut(s) 132, 172
HpyCH4V TGCA 1 cut(s) 60
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
HpyF3I CTNAG 3 cut(s) 106, 234, 291
Hsp92II CATG 1 cut(s) 60
HspAI GCGC 1 cut(s) 217
Kzo9I GATC 3 cut(s) 62, 146, 261
LpnPI CCDG 8 cut(s) 178, 215, 220, 227, 281, 285, 297, 324
LweI GCATC 1 cut(s) 119
MaeI CTAG 1 cut(s) 50
MaeIII GTNAC 1 cut(s) 209
MalI GATC 3 cut(s) 64, 148, 263
MboI GATC 3 cut(s) 62, 146, 261
MboII GAAGA 2 cut(s) 184, 187
MflI RGATCY 1 cut(s) 62
MluCI AATT 1 cut(s) 38
MnlI CCTC 9 cut(s) 40, 92, 115, 172, 178, 214, 240, 308, 330
MspI CCGG 2 cut(s) 165, 207
MspR9I CCNGG 1 cut(s) 312
MvaI CCWGG 1 cut(s) 312
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 1 cut(s) 142
NdeII GATC 3 cut(s) 62, 146, 261
NlaIII CATG 1 cut(s) 60
NmeAIII GCCGAG 1 cut(s) 11
NmuCI GTSAC 1 cut(s) 209
PinAI ACCGGT 1 cut(s) 206
PpuMI RGGWCCY 1 cut(s) 317
Psp5II RGGWCCY 1 cut(s) 317
Psp6I CCWGG 1 cut(s) 310
PspGI CCWGG 1 cut(s) 310
PspPI GGNCC 3 cut(s) 278, 308, 317
PspPPI RGGWCCY 1 cut(s) 317
PsuI RGATCY 1 cut(s) 62
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
Sau3AI GATC 3 cut(s) 62, 146, 261
Sau96I GGNCC 3 cut(s) 278, 308, 317
ScrFI CCNGG 1 cut(s) 312
SetI ASST 6 cut(s) 32, 84, 183, 240, 297, 319
SfaNI GCATC 1 cut(s) 119
SinI GGWCC 1 cut(s) 317
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 1 cut(s) 38
SsiI CCGC 2 cut(s) 134, 159
SspMI CTAG 1 cut(s) 50
StyD4I CCNGG 1 cut(s) 310
StyI CCWWGG 1 cut(s) 49
TaqI TCGA 2 cut(s) 26, 91
TasI AATT 1 cut(s) 38
TseFI GTSAC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 317
XmaJI CCTAGG 1 cut(s) 49
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.