Rh2BG391100

Cytochrome C oxidase, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0004102
Physical Location & Seq
Reverse (-)
55492584 .. 55496673
4090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG391100.1

Sequence Viewer

Length: 318 bp
ATGTGGCGGAGAATCCTCTCTTCGGCTCAGCTCAGAACCCTAACCCTAGCCGCCTCCTCCTCCTCCGCCGCCGCCGCCCCATGCCGATCCGCCGCCGCCGCATCCGCTCCCGCCCGCTTCTTCATCCCCAAGCCCCTTCCTCGCTACTTCAGCACCACTCCTTCTGTGGACACTTCTGTGAAGAAGAAGGTTGAGGAGATAATGCCCATTGCCACCGGCCACGAGCTAGAGGAGCTTGCAGCTGAAGTTCAGGGAAAGGATATCCTGGAAATCGACCATCCCGAAGGTCCTTTCGGCACAAAGGTCAGTCTGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0009058 GO:0009060 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016310 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034220 GO:0034641 GO:0034654 GO:0042773 GO:0042775 GO:0042776 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990542
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
COX5B

Protein Analysis

105

Amino Acids

11.23

Weight (kDa)

7.92

Isoelectric Point (pI)

48.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 107
AclWI GGATC 1 cut(s) 81
AcoI YGGCCR 1 cut(s) 217
AcuI CTGAAG 2 cut(s) 133, 264
AfiI CCNNNNNNNGG 1 cut(s) 22
AjnI CCWGG 1 cut(s) 264
AleI CACNNNNGTG 1 cut(s) 176
AluBI AGCT 4 cut(s) 31, 226, 235, 242
AluI AGCT 4 cut(s) 31, 226, 235, 242
AlwI GGATC 1 cut(s) 81
AoxI GGCC 1 cut(s) 217
ApeKI GCWGC 1 cut(s) 239
AspS9I GGNCC 1 cut(s) 287
AvaII GGWCC 1 cut(s) 287
BauI CACGAG 1 cut(s) 221
BbvI GCAGC 1 cut(s) 251
BccI CCATC 1 cut(s) 285
BciT130I CCWGG 1 cut(s) 266
BfaI CTAG 2 cut(s) 47, 227
BisI GCNGC 8 cut(s) 51, 69, 72, 75, 93, 96, 99, 240
BlpI GCTNAGC 1 cut(s) 27
BlsI GCNGC 8 cut(s) 52, 70, 73, 76, 94, 97, 100, 241
Bme1390I CCNGG 1 cut(s) 266
Bme18I GGWCC 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 287
BmrFI CCNGG 1 cut(s) 266
BmsI GCATC 1 cut(s) 110
Bpu1102I GCTNAGC 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse118I RCCGGY 1 cut(s) 215
Bse3DI GCAATG 1 cut(s) 207
BseBI CCWGG 1 cut(s) 266
BseGI GGATG 3 cut(s) 101, 123, 277
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMI GCAATG 1 cut(s) 207
BseMII CTCAG 2 cut(s) 41, 46
BseRI GAGGAG 5 cut(s) 46, 49, 52, 209, 245
BseXI GCAGC 1 cut(s) 251
BshFI GGCC 1 cut(s) 219
BsiSI CCGG 1 cut(s) 216
BslI CCNNNNNNNGG 1 cut(s) 22
BsnI GGCC 1 cut(s) 219
Bsp143I GATC 1 cut(s) 86
Bsp1720I GCTNAGC 1 cut(s) 27
BspANI GGCC 1 cut(s) 219
BspCNI CTCAG 2 cut(s) 40, 45
BspPI GGATC 1 cut(s) 81
BsrBI CCGCTC 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 207
BsrFI RCCGGY 1 cut(s) 215
BssAI RCCGGY 1 cut(s) 215
BssMI GATC 1 cut(s) 86
BssSI CACGAG 1 cut(s) 221
Bst2BI CACGAG 1 cut(s) 221
Bst2UI CCWGG 1 cut(s) 266
Bst6I CTCTTC 1 cut(s) 25
BstC8I GCNNGC 2 cut(s) 115, 237
BstDEI CTNAG 2 cut(s) 27, 32
BstF5I GGATG 3 cut(s) 101, 123, 277
BstKTI GATC 1 cut(s) 89
BstMBI GATC 1 cut(s) 86
BstMWI GCNNNNNNNGC 5 cut(s) 74, 98, 104, 150, 232
BstNI CCWGG 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 264
BstV1I GCAGC 1 cut(s) 251
BsuRI GGCC 1 cut(s) 219
BtsCI GGATG 3 cut(s) 101, 123, 277
Cac8I GCNNGC 2 cut(s) 115, 237
Cfr10I RCCGGY 1 cut(s) 215
Cfr13I GGNCC 1 cut(s) 287
CviAII CATG 1 cut(s) 81
CviJI RGCY 8 cut(s) 26, 31, 50, 133, 219, 226, 235, 242
CviKI_1 RGCY 8 cut(s) 26, 31, 50, 133, 219, 226, 235, 242
DdeI CTNAG 2 cut(s) 27, 32
DpnI GATC 1 cut(s) 88
DpnII GATC 1 cut(s) 86
EaeI YGGCCR 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
EciI GGCGGA 3 cut(s) 22, 55, 79
Eco32I GATATC 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 287
Eco57I CTGAAG 2 cut(s) 133, 264
EcoO109I RGGNCCY 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 264
EcoRV GATATC 1 cut(s) 262
FaeI CATG 1 cut(s) 84
FaiI YATR 2 cut(s) 82, 316
FatI CATG 1 cut(s) 80
FauI CCCGC 2 cut(s) 118, 122
Fnu4HI GCNGC 8 cut(s) 51, 69, 72, 75, 93, 96, 99, 240
FokI GGATG 3 cut(s) 88, 110, 264
Fsp4HI GCNGC 8 cut(s) 51, 69, 72, 75, 93, 96, 99, 240
FspBI CTAG 2 cut(s) 47, 227
GluI GCNGC 8 cut(s) 51, 69, 72, 75, 93, 96, 99, 240
HaeIII GGCC 1 cut(s) 219
HapII CCGG 1 cut(s) 216
Hin1II CATG 1 cut(s) 84
HinfI GANTC 1 cut(s) 12
HpaII CCGG 1 cut(s) 216
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 2 cut(s) 35, 312
Hpy188III TCNNGA 1 cut(s) 281
Hpy8I GTNNAC 1 cut(s) 169
HpyAV CCTTC 4 cut(s) 146, 171, 181, 278
HpyCH4V TGCA 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 5 cut(s) 74, 98, 104, 150, 232
HpyF3I CTNAG 2 cut(s) 27, 32
Hsp92II CATG 1 cut(s) 84
Kzo9I GATC 1 cut(s) 86
LmnI GCTCC 2 cut(s) 112, 232
LpnPI CCDG 4 cut(s) 229, 236, 251, 278
Lsp1109I GCAGC 1 cut(s) 251
LweI GCATC 1 cut(s) 110
MaeI CTAG 2 cut(s) 47, 227
MalI GATC 1 cut(s) 88
MbiI CCGCTC 1 cut(s) 107
MboI GATC 1 cut(s) 86
MboII GAAGA 4 cut(s) 12, 112, 193, 196
MnlI CCTC 8 cut(s) 26, 64, 67, 70, 73, 150, 187, 223
MslI CAYNNNNRTG 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 1 cut(s) 216
MspR9I CCNGG 1 cut(s) 266
MvaI CCWGG 1 cut(s) 266
MwoI GCNNNNNNNGC 5 cut(s) 74, 98, 104, 150, 232
NdeII GATC 1 cut(s) 86
NlaIII CATG 1 cut(s) 84
OliI CACNNNNGTG 1 cut(s) 176
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PfeI GAWTC 1 cut(s) 12
PfoI TCCNGGA 1 cut(s) 264
PkrI GCNGC 8 cut(s) 52, 70, 73, 76, 94, 97, 100, 241
PpuMI RGGWCCY 1 cut(s) 287
Psp5II RGGWCCY 1 cut(s) 287
Psp6I CCWGG 1 cut(s) 264
PspGI CCWGG 1 cut(s) 264
PspPI GGNCC 1 cut(s) 287
PspPPI RGGWCCY 1 cut(s) 287
PvuII CAGCTG 1 cut(s) 242
RseI CAYNNNNRTG 1 cut(s) 176
SatI GCNGC 8 cut(s) 51, 69, 72, 75, 93, 96, 99, 240
Sau3AI GATC 1 cut(s) 86
Sau96I GGNCC 1 cut(s) 287
ScrFI CCNGG 1 cut(s) 266
SetI ASST 7 cut(s) 33, 192, 228, 237, 244, 289, 306
SfaNI GCATC 1 cut(s) 110
SinI GGWCC 1 cut(s) 287
SmiMI CAYNNNNRTG 1 cut(s) 176
SspMI CTAG 2 cut(s) 47, 227
StyD4I CCNGG 1 cut(s) 264
TaqI TCGA 1 cut(s) 273
TauI GCSGC 7 cut(s) 53, 71, 74, 77, 95, 98, 101
TfiI GAWTC 1 cut(s) 12
TseI GCWGC 1 cut(s) 239
TspDTI ATGAA 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XspI CTAG 2 cut(s) 47, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.