Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004102

Physical Location & Seq

Genomic Coordinates Reverse (-)

59140225 .. 59141818

Gene Structure 1594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG392900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTGGAGGCGAGTGGTGTCTTGTTCGACCGCGGCTCAATTCCAAGCCGTAGGCTCATGCAGATCTTCTCCATCTCTCAACCTCACCCGTCGATTTCTAATCTCCTCAGCATCCACGCCTTCCACTCCCCTGCCGTTTCAGCGATCCCCCAATCTCTCCTCCCCCGCCTCCGGTTTGAAGAAGAAGGTTGAGGATATTATGCCCATTGCTACCGGTCACGAGCGCGAGGAACTTCAGGCTGAGCTTCAGGGGAGGGACATTCTTGAGATCAATCATCCAGTCGGTCCTTTTGGTACTAAGCTGGAAGTTGTTGGCCCAGGAGGTCCTCCAGATGGTCATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0009058 GO:0009060 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016310 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034220 GO:0034641 GO:0034654 GO:0042773 GO:0042775 GO:0042776 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX5B

Protein Analysis

114

Amino Acids

12.25

Weight (kDa)

8.8

Isoelectric Point (pI)

74.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52710 AT1G80230 AT3G15640 AT3G15640
fragaria_vesca	FvH4_2g29600 FvH4_6g30460
malus_domestica	MD08G1145100.v1.1 MD09G1221700.v1.1 MD15G1120800.v1.1 MD17G1203700.v1.1
prunus_persica	Prupe.1G473400_v2.0.a1 Prupe.3G078600_v2.0.a1
pyrus_communis	pycom15g10900 pycom17g20730
rosa_chinensis	RchiOBHm_Chr2g0136811 RchiOBHm_Chr6g0298591
rosa_laevigata	RLG00000011501 RLG00000019579
rosa_multiflora	Rmu_sc0001299.1_g000014 Rmu_sc0001534.1_g000012 Rmu_sc0004500.1_g000013 Rmu_sc0005272.1_g000001
rosa_roxburghii	Rroxscaffold_2G00107970 Rroxscaffold_7G00169510
rosa_rugosa	Rorug02G0334000 Rorug06G0281200
rosa_samantha	Rh2BG391100 Rh6AG392900 Rh6BG400600 Rh6CG406500 Rh6DG393200
rosa_wichuraiana	Rw2G031430 Rw6G034340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	32, 225
AciI	CCGC	3 cut(s)	30, 32, 165
AclWI	GGATC	1 cut(s)	138
AcuI	CTGAAG	2 cut(s)	218, 230
AfaI	GTAC	1 cut(s)	295
AfiI	CCNNNNNNNGG	2 cut(s)	170, 332
AgeI	ACCGGT	1 cut(s)	212
AgsI	TTSAA	1 cut(s)	178
AjnI	CCWGG	1 cut(s)	316
AluBI	AGCT	2 cut(s)	244, 301
AluI	AGCT	2 cut(s)	244, 301
AlwI	GGATC	1 cut(s)	138
AoxI	GGCC	1 cut(s)	313
AsiGI	ACCGGT	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	3 cut(s)	284, 314, 323
AsuHPI	GGTGA	1 cut(s)	76
AvaII	GGWCC	2 cut(s)	284, 323
BauI	CACGAG	1 cut(s)	218
BbvCI	CCTCAGC	1 cut(s)	106
BccI	CCATC	2 cut(s)	79, 326
BceAI	ACGGC	2 cut(s)	32, 118
BciT130I	CCWGG	1 cut(s)	318
BglII	AGATCT	1 cut(s)	62
BisI	GCNGC	1 cut(s)	33
BlpI	GCTNAGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	34
Bme1390I	CCNGG	1 cut(s)	318
Bme18I	GGWCC	2 cut(s)	284, 323
BmgT120I	GGNCC	3 cut(s)	284, 314, 323
BmrFI	CCNGG	1 cut(s)	318
BmsI	GCATC	1 cut(s)	119
BpmI	CTGGAG	1 cut(s)	312
Bpu10I	CCTNAGC	1 cut(s)	106
Bpu1102I	GCTNAGC	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	284
BsaBI	GATNNNNATC	1 cut(s)	336
BsaJI	CCNNGG	2 cut(s)	30, 316
BsaWI	WCCGGW	2 cut(s)	170, 212
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 332
Bse118I	RCCGGY	1 cut(s)	212
Bse1I	ACTGG	1 cut(s)	278
Bse3DI	GCAATG	1 cut(s)	204
Bse8I	GATNNNNATC	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	2 cut(s)	30, 316
BseGI	GGATG	2 cut(s)	110, 274
BseJI	GATNNNNATC	1 cut(s)	336
BseLI	CCNNNNNNNGG	2 cut(s)	170, 332
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	2 cut(s)	120, 231
BseNI	ACTGG	1 cut(s)	278
BseRI	GAGGAG	2 cut(s)	94, 148
Bsh1236I	CGCG	2 cut(s)	32, 225
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	315
BshTI	ACCGGT	1 cut(s)	212
BsiEI	CGRYCG	1 cut(s)	30
BsiSI	CCGG	2 cut(s)	171, 213
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	2 cut(s)	170, 332
BsmFI	GGGAC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	315
Bsp143I	GATC	3 cut(s)	62, 143, 267
Bsp1720I	GCTNAGC	1 cut(s)	240
BspACI	CCGC	3 cut(s)	30, 32, 165
BspANI	GGCC	1 cut(s)	315
BspCNI	CTCAG	2 cut(s)	119, 232
BspFNI	CGCG	2 cut(s)	32, 225
BspPI	GGATC	1 cut(s)	138
BsrDI	GCAATG	1 cut(s)	204
BsrFI	RCCGGY	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	278
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	2 cut(s)	30, 316
BssMI	GATC	3 cut(s)	62, 143, 267
BssSI	CACGAG	1 cut(s)	218
Bst2BI	CACGAG	1 cut(s)	218
Bst2UI	CCWGG	1 cut(s)	318
BstDEI	CTNAG	3 cut(s)	106, 240, 297
BstDSI	CCRYGG	1 cut(s)	30
BstF5I	GGATG	2 cut(s)	110, 274
BstFNI	CGCG	2 cut(s)	32, 225
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	3 cut(s)	65, 146, 270
BstMBI	GATC	3 cut(s)	62, 143, 267
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstNI	CCWGG	1 cut(s)	318
BstSCI	CCNGG	1 cut(s)	316
BstUI	CGCG	2 cut(s)	32, 225
BstX2I	RGATCY	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	315
BtgI	CCRYGG	1 cut(s)	30
BtsCI	GGATG	2 cut(s)	110, 274
CfoI	GCGC	1 cut(s)	225
Cfr10I	RCCGGY	1 cut(s)	212
Cfr13I	GGNCC	3 cut(s)	284, 314, 323
Cfr42I	CCGCGG	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	294
CspAI	ACCGGT	1 cut(s)	212
CviAII	CATG	1 cut(s)	57
CviJI	RGCY	7 cut(s)	35, 47, 54, 239, 244, 301, 315
CviKI_1	RGCY	7 cut(s)	35, 47, 54, 239, 244, 301, 315
CviQI	GTAC	1 cut(s)	294
DdeI	CTNAG	3 cut(s)	106, 240, 297
DpnI	GATC	3 cut(s)	64, 145, 269
DpnII	GATC	3 cut(s)	62, 143, 267
Eco47I	GGWCC	2 cut(s)	284, 323
Eco57I	CTGAAG	2 cut(s)	218, 230
EcoO109I	RGGNCCY	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	316
FaeI	CATG	1 cut(s)	60
FaiI	YATR	2 cut(s)	58, 200
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	1 cut(s)	56
FauI	CCCGC	1 cut(s)	172
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	2 cut(s)	97, 261
Fsp4HI	GCNGC	1 cut(s)	33
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	1 cut(s)	33
GsuI	CTGGAG	1 cut(s)	312
HaeIII	GGCC	1 cut(s)	315
HapII	CCGG	2 cut(s)	171, 213
HhaI	GCGC	1 cut(s)	225
Hin1II	CATG	1 cut(s)	60
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HpaII	CCGG	2 cut(s)	171, 213
HphI	GGTGA	1 cut(s)	76
Hpy188III	TCNNGA	3 cut(s)	218, 263, 329
Hpy99I	CGWCG	1 cut(s)	93
HpyAV	CCTTC	2 cut(s)	129, 178
HpyCH4V	TGCA	1 cut(s)	60
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpyF3I	CTNAG	3 cut(s)	106, 240, 297
Hsp92II	CATG	1 cut(s)	60
HspAI	GCGC	1 cut(s)	223
KspI	CCGCGG	1 cut(s)	33
Kzo9I	GATC	3 cut(s)	62, 143, 267
LpnPI	CCDG	9 cut(s)	143, 184, 221, 226, 233, 287, 291, 303, 330
LweI	GCATC	1 cut(s)	119
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	3 cut(s)	64, 145, 269
MboI	GATC	3 cut(s)	62, 143, 267
MboII	GAAGA	3 cut(s)	57, 190, 193
MflI	RGATCY	1 cut(s)	62
MluCI	AATT	1 cut(s)	38
MnlI	CCTC	9 cut(s)	92, 115, 169, 178, 184, 220, 246, 314, 336
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	2 cut(s)	171, 213
MspR9I	CCNGG	1 cut(s)	318
MvaI	CCWGG	1 cut(s)	318
MvnI	CGCG	2 cut(s)	32, 225
MwoI	GCNNNNNNNGC	1 cut(s)	139
NdeII	GATC	3 cut(s)	62, 143, 267
NlaIII	CATG	1 cut(s)	60
NmuCI	GTSAC	1 cut(s)	215
PinAI	ACCGGT	1 cut(s)	212
PkrI	GCNGC	1 cut(s)	34
PpuMI	RGGWCCY	1 cut(s)	323
Psp5II	RGGWCCY	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
PspPI	GGNCC	3 cut(s)	284, 314, 323
PspPPI	RGGWCCY	1 cut(s)	323
PsuI	RGATCY	1 cut(s)	62
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
SacII	CCGCGG	1 cut(s)	33
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	3 cut(s)	62, 143, 267
Sau96I	GGNCC	3 cut(s)	284, 314, 323
ScrFI	CCNGG	1 cut(s)	318
SetI	ASST	5 cut(s)	84, 189, 246, 303, 325
SfaNI	GCATC	1 cut(s)	119
Sfr303I	CCGCGG	1 cut(s)	33
SgrBI	CCGCGG	1 cut(s)	33
SinI	GGWCC	2 cut(s)	284, 323
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	1 cut(s)	38
SsiI	CCGC	3 cut(s)	30, 32, 165
StyD4I	CCNGG	1 cut(s)	316
TaqI	TCGA	2 cut(s)	26, 91
TaqII	GACCGA	1 cut(s)	272
TasI	AATT	1 cut(s)	38
TauI	GCSGC	1 cut(s)	35
TseFI	GTSAC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	215
VpaK11BI	GGWCC	2 cut(s)	284, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.