RchiOBHm_Chr6g0298591

Cytochrome C oxidase, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0004102
Physical Location & Seq
Reverse (-)
59948350 .. 59950332
1983 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26806

Sequence Viewer

Length: 489 bp
ATGTGGAGGCGAGTGGTGTCTTGTTCGACCTCGGCTCAATTCCAAGCCGTAGGCTCATGCAGATCTTCTCCATCTCTCAACCTCACCCGTCGATTTCTAATCTCCTCAGCATCCACGCCTTCCACTCCCCCGCCGTTTCAGCGATCCCCCAATCTCTCCTCCCCCGCCTCCGGTTTGAAGAAGGTTGAAGATATTATGCCCATTGCTACCGGTCACGAGCGCGAGGAACTTCAGGCTGAGCTTCAGGGGAGGGACATTCTTGAGGTCAATCATCCAGTCGGTCCTTTTGGTACTAAGGAAGCACCTGCTATAGTCAAGTCCTACTATGACAGAAGAATAGTTGGCTGCCCTGGTGTTGAAGGAGAGGATGAGCATGATGTTGTGTGGTTTTGGCTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGTTCCCAATATTTCAAGCTGGAAGTTGTTGGCCCAGGAGGTCCTCCAGATGGTCATCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0009058 GO:0009060 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016310 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034220 GO:0034641 GO:0034654 GO:0042773 GO:0042775 GO:0042776 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990542
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
COX5B

Protein Analysis

162

Amino Acids

17.79

Weight (kDa)

6.29

Isoelectric Point (pI)

66.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX5B PF01215 68 - 156 4.2e-20 Cytochrome c oxidase subunit Vb
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 313
Acc36I ACCTGC 1 cut(s) 313
AccII CGCG 1 cut(s) 222
AciI CCGC 2 cut(s) 131, 165
AclWI GGATC 1 cut(s) 138
AcuI CTGAAG 2 cut(s) 215, 227
AfaI GTAC 1 cut(s) 292
AfiI CCNNNNNNNGG 2 cut(s) 170, 476
AgeI ACCGGT 1 cut(s) 209
AgsI TTSAA 4 cut(s) 178, 188, 359, 442
AjnI CCWGG 2 cut(s) 349, 460
AluBI AGCT 2 cut(s) 241, 445
AluI AGCT 2 cut(s) 241, 445
AlwI GGATC 1 cut(s) 138
AoxI GGCC 1 cut(s) 457
ApeKI GCWGC 1 cut(s) 345
AsiGI ACCGGT 1 cut(s) 209
AspLEI GCGC 1 cut(s) 222
AspS9I GGNCC 3 cut(s) 281, 458, 467
AsuHPI GGTGA 1 cut(s) 76
AvaII GGWCC 2 cut(s) 281, 467
BauI CACGAG 1 cut(s) 215
BbvCI CCTCAGC 1 cut(s) 106
BbvI GCAGC 1 cut(s) 332
BccI CCATC 2 cut(s) 79, 470
BceAI ACGGC 2 cut(s) 32, 118
BciT130I CCWGG 2 cut(s) 351, 462
BfmI CTRYAG 1 cut(s) 309
BfuAI ACCTGC 1 cut(s) 313
BglII AGATCT 1 cut(s) 62
BisI GCNGC 1 cut(s) 346
BlpI GCTNAGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 347
Bme1390I CCNGG 2 cut(s) 351, 462
Bme18I GGWCC 2 cut(s) 281, 467
BmgT120I GGNCC 3 cut(s) 281, 458, 467
BmrFI CCNGG 2 cut(s) 351, 462
BmsI GCATC 1 cut(s) 119
BpmI CTGGAG 2 cut(s) 416, 456
Bpu10I CCTNAGC 1 cut(s) 106
Bpu1102I GCTNAGC 1 cut(s) 237
BpuEI CTTGAG 1 cut(s) 281
BsaBI GATNNNNATC 1 cut(s) 480
BsaJI CCNNGG 3 cut(s) 30, 349, 460
BsaWI WCCGGW 2 cut(s) 170, 209
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 476
Bse118I RCCGGY 1 cut(s) 209
Bse1I ACTGG 1 cut(s) 275
Bse3DI GCAATG 1 cut(s) 201
Bse8I GATNNNNATC 1 cut(s) 480
BseBI CCWGG 2 cut(s) 351, 462
BseDI CCNNGG 3 cut(s) 30, 349, 460
BseGI GGATG 3 cut(s) 110, 271, 373
BseJI GATNNNNATC 1 cut(s) 480
BseLI CCNNNNNNNGG 2 cut(s) 170, 476
BseMI GCAATG 1 cut(s) 201
BseMII CTCAG 2 cut(s) 120, 228
BseNI ACTGG 1 cut(s) 275
BseRI GAGGAG 2 cut(s) 94, 148
BseXI GCAGC 1 cut(s) 332
Bsh1236I CGCG 1 cut(s) 222
BshFI GGCC 1 cut(s) 459
BshTI ACCGGT 1 cut(s) 209
BsiSI CCGG 2 cut(s) 171, 210
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 2 cut(s) 170, 476
BsmFI GGGAC 1 cut(s) 266
BsmI GAATGC 1 cut(s) 422
BsnI GGCC 1 cut(s) 459
Bsp143I GATC 2 cut(s) 62, 143
Bsp1720I GCTNAGC 1 cut(s) 237
BspACI CCGC 2 cut(s) 131, 165
BspANI GGCC 1 cut(s) 459
BspCNI CTCAG 2 cut(s) 119, 229
BspFNI CGCG 1 cut(s) 222
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 1 cut(s) 138
BsrDI GCAATG 1 cut(s) 201
BsrFI RCCGGY 1 cut(s) 209
BsrI ACTGG 1 cut(s) 275
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 3 cut(s) 30, 349, 460
BssMI GATC 2 cut(s) 62, 143
BssSI CACGAG 1 cut(s) 215
Bst2BI CACGAG 1 cut(s) 215
Bst2UI CCWGG 2 cut(s) 351, 462
BstC8I GCNNGC 1 cut(s) 407
BstDEI CTNAG 3 cut(s) 106, 237, 294
BstF5I GGATG 3 cut(s) 110, 271, 373
BstFNI CGCG 1 cut(s) 222
BstHHI GCGC 1 cut(s) 222
BstKTI GATC 2 cut(s) 65, 146
BstMBI GATC 2 cut(s) 62, 143
BstMWI GCNNNNNNNGC 1 cut(s) 139
BstNI CCWGG 2 cut(s) 351, 462
BstSCI CCNGG 2 cut(s) 349, 460
BstSFI CTRYAG 1 cut(s) 309
BstUI CGCG 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 332
BstX2I RGATCY 1 cut(s) 62
BstYI RGATCY 1 cut(s) 62
BsuRI GGCC 1 cut(s) 459
BtsCI GGATG 3 cut(s) 110, 271, 373
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 407
CfoI GCGC 1 cut(s) 222
Cfr10I RCCGGY 1 cut(s) 209
Cfr13I GGNCC 3 cut(s) 281, 458, 467
Csp6I GTAC 1 cut(s) 291
CspAI ACCGGT 1 cut(s) 209
CviAII CATG 3 cut(s) 57, 374, 413
CviQI GTAC 1 cut(s) 291
DdeI CTNAG 3 cut(s) 106, 237, 294
DpnI GATC 2 cut(s) 64, 145
DpnII GATC 2 cut(s) 62, 143
Eco47I GGWCC 2 cut(s) 281, 467
Eco57I CTGAAG 2 cut(s) 215, 227
EcoO109I RGGNCCY 1 cut(s) 467
EcoRII CCWGG 2 cut(s) 349, 460
FaeI CATG 3 cut(s) 60, 377, 416
FaiI YATR 6 cut(s) 58, 197, 311, 327, 375, 414
FaqI GGGAC 1 cut(s) 266
FatI CATG 3 cut(s) 56, 373, 412
FauI CCCGC 2 cut(s) 138, 172
Fnu4HI GCNGC 1 cut(s) 346
FokI GGATG 3 cut(s) 97, 258, 380
Fsp4HI GCNGC 1 cut(s) 346
GlaI GCGC 1 cut(s) 221
GluI GCNGC 1 cut(s) 346
GsuI CTGGAG 2 cut(s) 416, 456
HaeIII GGCC 1 cut(s) 459
HapII CCGG 2 cut(s) 171, 210
HhaI GCGC 1 cut(s) 222
Hin1II CATG 3 cut(s) 60, 377, 416
Hin6I GCGC 1 cut(s) 220
HinP1I GCGC 1 cut(s) 220
HpaII CCGG 2 cut(s) 171, 210
HphI GGTGA 1 cut(s) 76
Hpy188III TCNNGA 3 cut(s) 215, 260, 473
Hpy99I CGWCG 1 cut(s) 93
HpyAV CCTTC 3 cut(s) 129, 175, 353
HpyCH4V TGCA 1 cut(s) 60
HpyF10VI GCNNNNNNNGC 1 cut(s) 139
HpyF3I CTNAG 3 cut(s) 106, 237, 294
Hsp92II CATG 3 cut(s) 60, 377, 416
HspAI GCGC 1 cut(s) 220
Kzo9I GATC 2 cut(s) 62, 143
Lsp1109I GCAGC 1 cut(s) 332
LweI GCATC 1 cut(s) 119
MaeIII GTNAC 1 cut(s) 212
MalI GATC 2 cut(s) 64, 145
MboI GATC 2 cut(s) 62, 143
MboII GAAGA 4 cut(s) 57, 190, 200, 345
MflI RGATCY 1 cut(s) 62
MluCI AATT 1 cut(s) 38
MslI CAYNNNNRTG 1 cut(s) 415
MspI CCGG 2 cut(s) 171, 210
MspR9I CCNGG 2 cut(s) 351, 462
Mva1269I GAATGC 1 cut(s) 422
MvaI CCWGG 2 cut(s) 351, 462
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 1 cut(s) 139
NdeII GATC 2 cut(s) 62, 143
NlaIII CATG 3 cut(s) 60, 377, 416
NmeAIII GCCGAG 1 cut(s) 11
NmuCI GTSAC 1 cut(s) 212
PaqCI CACCTGC 1 cut(s) 313
PctI GAATGC 1 cut(s) 422
PinAI ACCGGT 1 cut(s) 209
PkrI GCNGC 1 cut(s) 347
PpuMI RGGWCCY 1 cut(s) 467
Psp5II RGGWCCY 1 cut(s) 467
Psp6I CCWGG 2 cut(s) 349, 460
PspGI CCWGG 2 cut(s) 349, 460
PspPI GGNCC 3 cut(s) 281, 458, 467
PspPPI RGGWCCY 1 cut(s) 467
PsuI RGATCY 1 cut(s) 62
RsaI GTAC 1 cut(s) 292
RsaNI GTAC 1 cut(s) 291
RseI CAYNNNNRTG 1 cut(s) 415
SatI GCNGC 1 cut(s) 346
Sau3AI GATC 2 cut(s) 62, 143
Sau96I GGNCC 3 cut(s) 281, 458, 467
ScrFI CCNGG 2 cut(s) 351, 462
SetI ASST 8 cut(s) 32, 84, 186, 243, 267, 307, 447, 469
SfaNI GCATC 1 cut(s) 119
SfcI CTRYAG 1 cut(s) 309
SinI GGWCC 2 cut(s) 281, 467
SmiMI CAYNNNNRTG 1 cut(s) 415
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 1 cut(s) 38
SsiI CCGC 2 cut(s) 131, 165
SspI AATATT 1 cut(s) 437
StyD4I CCNGG 2 cut(s) 349, 460
TaqI TCGA 2 cut(s) 26, 91
TaqII GACCGA 1 cut(s) 269
TasI AATT 1 cut(s) 38
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 1 cut(s) 345
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 1 cut(s) 429
VpaK11BI GGWCC 2 cut(s) 281, 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.