AT3G15640

Cytochrome c oxidase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004102
Physical Location & Seq
Forward (+)
5298991 .. 5301745
2755 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G15640.1

Sequence Viewer

Length: 531 bp
ATGTGGAGAAGAATCGTCTCCTCTCAGCTCAAAACCCTAGCCGCCGATGTCGTCGCTGCTTCTCCTCGTCGATCGATAGCCGCCACCACCAGACCTGTCGGTTTCTATCTCGCCGCCAATCGATCAGCCATTTCCGCATCTTCTTTCGTTATCCCTCGTCGTTTCAGCTCCGATTCAGTAGAGACTCCTGCGACGAAGAAGGTGGAGGATGTAATGCCCATTGCGACTGGACACGAGAAGGAAGAGCTTGAAGCTGAACTTGAGGGAAGGAGGCTGGATGATATTGACTTCCCTGAAGGTCCTTTTGGAACTAAGGAAGCTCCTGCTATTGTGAAGTCCTACTATGACAAGCGAATTGTGGGCTGCCCTGGTGGTGAAGGCGAGGACGAGCACGATGTTGTCTGGTTCTGGCTGGAGAAAGGAAAGTCCTTTGAATGCCCGGTTTGCACTCAGTACTTTGAGCTGGAAGTGGTTGGTCCTGGTGGTCCTCCGGATGGTCACGGTGACGAAGACGATGAGCACCACCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009060 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016310 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0042773 GO:0042775 GO:0042776 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046872 GO:0046907 GO:0046914 GO:0050897 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990542
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
COX5B

Protein Analysis

176

Amino Acids

19.42

Weight (kDa)

4.91

Isoelectric Point (pI)

56.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX5B PF01215 75 - 161 4.5e-16 Cytochrome c oxidase subunit Vb
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 490
AciI CCGC 4 cut(s) 42, 81, 114, 135
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 1 cut(s) 455
AfiI CCNNNNNNNGG 1 cut(s) 494
AgsI TTSAA 2 cut(s) 251, 434
AjnI CCWGG 2 cut(s) 367, 478
AjuI GAANNNNNNNTTGG 2 cut(s) 288, 320
AluBI AGCT 6 cut(s) 28, 168, 247, 254, 320, 463
AluI AGCT 6 cut(s) 28, 168, 247, 254, 320, 463
Alw21I GWGCWC 2 cut(s) 393, 522
Alw26I GTCTC 2 cut(s) 22, 176
Aor13HI TCCGGA 1 cut(s) 490
ApeKI GCWGC 2 cut(s) 56, 363
AspS9I GGNCC 3 cut(s) 299, 476, 485
AsuC2I CCSGG 1 cut(s) 440
AsuHPI GGTGA 2 cut(s) 386, 515
AvaII GGWCC 3 cut(s) 299, 476, 485
BauI CACGAG 1 cut(s) 233
BbsI GAAGAC 1 cut(s) 516
Bbv12I GWGCWC 2 cut(s) 393, 522
BbvI GCAGC 2 cut(s) 43, 350
BccI CCATC 1 cut(s) 488
BciT130I CCWGG 2 cut(s) 369, 480
BcnI CCSGG 1 cut(s) 440
BcoDI GTCTC 2 cut(s) 22, 176
BfaI CTAG 1 cut(s) 38
BisI GCNGC 5 cut(s) 42, 57, 81, 114, 364
BlsI GCNGC 5 cut(s) 43, 58, 82, 115, 365
BmcAI AGTACT 1 cut(s) 455
Bme1390I CCNGG 3 cut(s) 369, 440, 480
Bme18I GGWCC 3 cut(s) 299, 476, 485
BmgT120I GGNCC 3 cut(s) 299, 476, 485
BmrFI CCNGG 3 cut(s) 369, 440, 480
BmsI GCATC 1 cut(s) 146
BpiI GAAGAC 1 cut(s) 516
BpmI CTGGAG 1 cut(s) 434
BpuEI CTTGAG 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 440
Bsa29I ATCGAT 2 cut(s) 74, 121
BsaJI CCNNGG 1 cut(s) 367
BsaWI WCCGGW 1 cut(s) 490
Bsc4I CCNNNNNNNGG 1 cut(s) 494
Bse1I ACTGG 1 cut(s) 232
Bse3DI GCAATG 1 cut(s) 219
BseAI TCCGGA 1 cut(s) 490
BseBI CCWGG 2 cut(s) 369, 480
BseCI ATCGAT 2 cut(s) 74, 121
BseDI CCNNGG 1 cut(s) 367
BseGI GGATG 3 cut(s) 214, 283, 499
BseLI CCNNNNNNNGG 1 cut(s) 494
BseMI GCAATG 1 cut(s) 219
BseMII CTCAG 2 cut(s) 38, 464
BseNI ACTGG 1 cut(s) 232
BseRI GAGGAG 2 cut(s) 10, 54
BseXI GCAGC 2 cut(s) 43, 350
Bsh1285I CGRYCG 1 cut(s) 74
BshVI ATCGAT 2 cut(s) 74, 121
BsiEI CGRYCG 1 cut(s) 74
BsiHKAI GWGCWC 2 cut(s) 393, 522
BsiSI CCGG 2 cut(s) 440, 491
BslI CCNNNNNNNGG 1 cut(s) 494
BsmAI GTCTC 2 cut(s) 22, 176
BsmBI CGTCTC 1 cut(s) 22
BsmI GAATGC 1 cut(s) 440
Bsp1286I GDGCHC 2 cut(s) 393, 522
Bsp13I TCCGGA 1 cut(s) 490
Bsp143I GATC 2 cut(s) 71, 122
BspACI CCGC 4 cut(s) 42, 81, 114, 135
BspCNI CTCAG 2 cut(s) 37, 463
BspDI ATCGAT 2 cut(s) 74, 121
BspEI TCCGGA 1 cut(s) 490
BspQI GCTCTTC 1 cut(s) 237
BsrDI GCAATG 1 cut(s) 219
BsrI ACTGG 1 cut(s) 232
BssECI CCNNGG 1 cut(s) 367
BssMI GATC 2 cut(s) 71, 122
BssSI CACGAG 1 cut(s) 233
Bst2BI CACGAG 1 cut(s) 233
Bst2UI CCWGG 2 cut(s) 369, 480
Bst4CI ACNGT 1 cut(s) 503
Bst6I CTCTTC 1 cut(s) 237
BstDEI CTNAG 3 cut(s) 24, 312, 450
BstF5I GGATG 3 cut(s) 214, 283, 499
BstKTI GATC 2 cut(s) 74, 125
BstMAI GTCTC 2 cut(s) 22, 176
BstMBI GATC 2 cut(s) 71, 122
BstMCI CGRYCG 1 cut(s) 74
BstMWI GCNNNNNNNGC 2 cut(s) 134, 444
BstNI CCWGG 2 cut(s) 369, 480
BstSCI CCNGG 3 cut(s) 367, 438, 478
BstV1I GCAGC 2 cut(s) 43, 350
BstV2I GAAGAC 1 cut(s) 516
Bsu15I ATCGAT 2 cut(s) 74, 121
BsuTUI ATCGAT 2 cut(s) 74, 121
BtsCI GGATG 3 cut(s) 214, 283, 499
BtsIMutI CAGTG 1 cut(s) 526
Cfr13I GGNCC 3 cut(s) 299, 476, 485
ClaI ATCGAT 2 cut(s) 74, 121
Csp6I GTAC 1 cut(s) 454
CviQI GTAC 1 cut(s) 454
DdeI CTNAG 3 cut(s) 24, 312, 450
DpnI GATC 2 cut(s) 73, 124
DpnII GATC 2 cut(s) 71, 122
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Eco47I GGWCC 3 cut(s) 299, 476, 485
Eco57I CTGAAG 1 cut(s) 315
EcoO109I RGGNCCY 1 cut(s) 299
EcoRII CCWGG 2 cut(s) 367, 478
Esp3I CGTCTC 1 cut(s) 22
FaiI YATR 1 cut(s) 345
FalI AAGNNNNNCTT 2 cut(s) 243, 275
Fnu4HI GCNGC 5 cut(s) 42, 57, 81, 114, 364
FokI GGATG 3 cut(s) 221, 290, 506
Fsp4HI GCNGC 5 cut(s) 42, 57, 81, 114, 364
FspBI CTAG 1 cut(s) 38
GluI GCNGC 5 cut(s) 42, 57, 81, 114, 364
GsuI CTGGAG 1 cut(s) 434
HapII CCGG 2 cut(s) 440, 491
HinfI GANTC 3 cut(s) 12, 173, 184
HpaII CCGG 2 cut(s) 440, 491
HphI GGTGA 2 cut(s) 386, 515
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 1 cut(s) 491
Hpy99I CGWCG 4 cut(s) 56, 72, 162, 196
HpyAV CCTTC 5 cut(s) 193, 232, 261, 290, 371
HpyCH4III ACNGT 1 cut(s) 503
HpyCH4V TGCA 1 cut(s) 447
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 444
HpyF3I CTNAG 3 cut(s) 24, 312, 450
Kpn2I TCCGGA 1 cut(s) 490
Kzo9I GATC 2 cut(s) 71, 122
LguI GCTCTTC 1 cut(s) 237
LmnI GCTCC 2 cut(s) 173, 325
Lsp1109I GCAGC 2 cut(s) 43, 350
LweI GCATC 1 cut(s) 146
MaeI CTAG 1 cut(s) 38
MaeIII GTNAC 2 cut(s) 497, 503
MalI GATC 2 cut(s) 73, 124
MboI GATC 2 cut(s) 71, 122
MboII GAAGA 5 cut(s) 21, 132, 208, 254, 521
MhlI GDGCHC 2 cut(s) 393, 522
MluCI AATT 1 cut(s) 354
MlyI GAGTC 1 cut(s) 178
MnlI CCTC 8 cut(s) 31, 75, 165, 199, 256, 264, 376, 498
MroI TCCGGA 1 cut(s) 490
MspI CCGG 2 cut(s) 440, 491
MspR9I CCNGG 3 cut(s) 369, 440, 480
Mva1269I GAATGC 1 cut(s) 440
MvaI CCWGG 2 cut(s) 369, 480
MwoI GCNNNNNNNGC 2 cut(s) 134, 444
NciI CCSGG 1 cut(s) 440
NdeII GATC 2 cut(s) 71, 122
NmuCI GTSAC 2 cut(s) 497, 503
PciSI GCTCTTC 1 cut(s) 237
PctI GAATGC 1 cut(s) 440
PfeI GAWTC 2 cut(s) 12, 173
PkrI GCNGC 5 cut(s) 43, 58, 82, 115, 365
Ple19I CGATCG 1 cut(s) 74
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
PpuMI RGGWCCY 1 cut(s) 299
Psp5II RGGWCCY 1 cut(s) 299
Psp6I CCWGG 2 cut(s) 367, 478
PspGI CCWGG 2 cut(s) 367, 478
PspPI GGNCC 3 cut(s) 299, 476, 485
PspPPI RGGWCCY 1 cut(s) 299
PvuI CGATCG 1 cut(s) 74
RsaI GTAC 1 cut(s) 455
RsaNI GTAC 1 cut(s) 454
SapI GCTCTTC 1 cut(s) 237
SatI GCNGC 5 cut(s) 42, 57, 81, 114, 364
Sau3AI GATC 2 cut(s) 71, 122
Sau96I GGNCC 3 cut(s) 299, 476, 485
ScaI AGTACT 1 cut(s) 455
SchI GAGTC 1 cut(s) 178
ScrFI CCNGG 3 cut(s) 369, 440, 480
SduI GDGCHC 2 cut(s) 393, 522
SetI ASST 9 cut(s) 30, 97, 170, 204, 249, 256, 301, 322, 465
SfaNI GCATC 1 cut(s) 146
SinI GGWCC 3 cut(s) 299, 476, 485
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 1 cut(s) 354
SsiI CCGC 4 cut(s) 42, 81, 114, 135
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 3 cut(s) 367, 438, 478
TaaI ACNGT 1 cut(s) 503
TaqI TCGA 3 cut(s) 70, 74, 121
TasI AATT 1 cut(s) 354
TatI WGTACW 1 cut(s) 453
TauI GCSGC 3 cut(s) 44, 83, 116
TfiI GAWTC 2 cut(s) 12, 173
TseFI GTSAC 2 cut(s) 497, 503
TseI GCWGC 2 cut(s) 56, 363
Tsp45I GTSAC 2 cut(s) 497, 503
VpaK11BI GGWCC 3 cut(s) 299, 476, 485
XspI CTAG 1 cut(s) 38
ZrmI AGTACT 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.