RLG00000019579

Cytochrome C oxidase, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0004102
Physical Location & Seq
Reverse (-)
53839885 .. 53843393
3509 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019579

Sequence Viewer

Length: 504 bp
ATGTGGCGGAGAATCCTCTCTTCGGCTCAGCTCAGAACCCTAACCCTAGCCGCCACCTCCTCCTCCTCCTCCGCCGCCCCATGCCGATCCGCCGCCGCGGCATACGCTCCCGCCCGCTTCTTCGTCCCCAAGCCCCTTCCTCGCTACTTCAGCACCACTCCTTCTGTGGATACTTCTGTGAAGAAGAAGGTTGAGGAGATAATGCCCATTGCCACCGGCCACGAGCTAGAGGAGCTTGCCGCTGAAGTTCAGGGAAAGGATATCCTGGAAATCGACCATCCCGAAGGTCCTTTCGGCACAAAGGAAGCACCTGCAGTTGTGAAGTCCTATTACGACAAGAGAATAGTTGGATGCCCTGGTGGTGAAGGCGAGGATGAACATGATGTTGTGTGGTTTTGGCTGGAGAAGGGCAAGCCACATGAATGTCCGGTCTGCTCACAGTATTTTGTGCTTGAAGTGGTTGGACCCGGCGGATCTCCAGACCACTCTGATGATCATCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0009058 GO:0009060 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016310 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034220 GO:0034641 GO:0034654 GO:0042773 GO:0042775 GO:0042776 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990542
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
COX5B

Protein Analysis

168

Amino Acids

18.23

Weight (kDa)

5.46

Isoelectric Point (pI)

52.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX5B PF01215 71 - 159 1.6e-16 Cytochrome c oxidase subunit Vb
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 319
Acc36I ACCTGC 1 cut(s) 319
AccII CGCG 1 cut(s) 98
AclWI GGATC 2 cut(s) 81, 481
AcoI YGGCCR 1 cut(s) 217
AcuI CTGAAG 2 cut(s) 133, 264
AfiI CCNNNNNNNGG 1 cut(s) 22
AgsI TTSAA 1 cut(s) 455
AjnI CCWGG 2 cut(s) 264, 355
AluBI AGCT 3 cut(s) 31, 226, 235
AluI AGCT 3 cut(s) 31, 226, 235
AlwI GGATC 2 cut(s) 81, 481
AoxI GGCC 1 cut(s) 217
AspS9I GGNCC 2 cut(s) 287, 464
AsuC2I CCSGG 1 cut(s) 468
AsuHPI GGTGA 1 cut(s) 374
AvaII GGWCC 2 cut(s) 287, 464
BaeI ACNNNNGTAYC 2 cut(s) 162, 195
BarI GAAGNNNNNNTAC 2 cut(s) 314, 346
BauI CACGAG 1 cut(s) 221
BccI CCATC 1 cut(s) 285
BciT130I CCWGG 2 cut(s) 266, 357
BciVI GTATCC 1 cut(s) 163
BclI TGATCA 1 cut(s) 493
BcnI CCSGG 1 cut(s) 468
BfaI CTAG 2 cut(s) 47, 227
BfmI CTRYAG 1 cut(s) 312
BfuAI ACCTGC 1 cut(s) 319
BfuI GTATCC 1 cut(s) 163
BglI GCCNNNNNGGC 1 cut(s) 98
BisI GCNGC 6 cut(s) 51, 75, 93, 96, 99, 240
BlpI GCTNAGC 1 cut(s) 27
BlsI GCNGC 6 cut(s) 52, 76, 94, 97, 100, 241
Bme1390I CCNGG 3 cut(s) 266, 357, 468
Bme18I GGWCC 2 cut(s) 287, 464
BmgT120I GGNCC 2 cut(s) 287, 464
BmiI GGNNCC 1 cut(s) 466
BmrFI CCNGG 3 cut(s) 266, 357, 468
BmsI GCATC 1 cut(s) 341
BpmI CTGGAG 2 cut(s) 422, 462
Bpu1102I GCTNAGC 1 cut(s) 27
BpuMI CCSGG 1 cut(s) 468
BsaBI GATNNNNATC 1 cut(s) 495
BsaJI CCNNGG 2 cut(s) 96, 355
BsaWI WCCGGW 1 cut(s) 427
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse118I RCCGGY 1 cut(s) 215
Bse3DI GCAATG 1 cut(s) 207
Bse8I GATNNNNATC 1 cut(s) 495
BseBI CCWGG 2 cut(s) 266, 357
BseDI CCNNGG 2 cut(s) 96, 355
BseGI GGATG 3 cut(s) 277, 356, 379
BseJI GATNNNNATC 1 cut(s) 495
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMI GCAATG 1 cut(s) 207
BseMII CTCAG 2 cut(s) 41, 46
BseRI GAGGAG 6 cut(s) 49, 52, 55, 58, 209, 245
Bsh1236I CGCG 1 cut(s) 98
BshFI GGCC 1 cut(s) 219
BsiSI CCGG 3 cut(s) 216, 428, 468
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 110
BsnI GGCC 1 cut(s) 219
Bsp143I GATC 3 cut(s) 86, 473, 493
Bsp1720I GCTNAGC 1 cut(s) 27
BspANI GGCC 1 cut(s) 219
BspCNI CTCAG 2 cut(s) 40, 45
BspFNI CGCG 1 cut(s) 98
BspLI GGNNCC 1 cut(s) 466
BspMAI CTGCAG 1 cut(s) 316
BspMI ACCTGC 1 cut(s) 319
BspPI GGATC 2 cut(s) 81, 481
BsrDI GCAATG 1 cut(s) 207
BsrFI RCCGGY 1 cut(s) 215
BssAI RCCGGY 1 cut(s) 215
BssECI CCNNGG 2 cut(s) 96, 355
BssMI GATC 3 cut(s) 86, 473, 493
BssSI CACGAG 1 cut(s) 221
Bst2BI CACGAG 1 cut(s) 221
Bst2UI CCWGG 2 cut(s) 266, 357
Bst4CI ACNGT 1 cut(s) 441
Bst6I CTCTTC 1 cut(s) 25
BstC8I GCNNGC 3 cut(s) 115, 237, 413
BstDEI CTNAG 2 cut(s) 27, 32
BstDSI CCRYGG 1 cut(s) 96
BstF5I GGATG 3 cut(s) 277, 356, 379
BstFNI CGCG 1 cut(s) 98
BstKTI GATC 3 cut(s) 89, 476, 496
BstMBI GATC 3 cut(s) 86, 473, 493
BstMWI GCNNNNNNNGC 4 cut(s) 98, 104, 150, 232
BstNI CCWGG 2 cut(s) 266, 357
BstSCI CCNGG 3 cut(s) 264, 355, 466
BstSFI CTRYAG 1 cut(s) 312
BstUI CGCG 1 cut(s) 98
BstX2I RGATCY 1 cut(s) 473
BstYI RGATCY 1 cut(s) 473
BsuI GTATCC 1 cut(s) 163
BsuRI GGCC 1 cut(s) 219
BtgI CCRYGG 1 cut(s) 96
BtsCI GGATG 3 cut(s) 277, 356, 379
BveI ACCTGC 1 cut(s) 319
Cac8I GCNNGC 3 cut(s) 115, 237, 413
Cfr10I RCCGGY 1 cut(s) 215
Cfr13I GGNCC 2 cut(s) 287, 464
Cfr42I CCGCGG 1 cut(s) 99
CviAII CATG 3 cut(s) 81, 380, 419
CviJI RGCY 9 cut(s) 26, 31, 50, 133, 219, 226, 235, 400, 415
CviKI_1 RGCY 9 cut(s) 26, 31, 50, 133, 219, 226, 235, 400, 415
DdeI CTNAG 2 cut(s) 27, 32
DpnI GATC 3 cut(s) 88, 475, 495
DpnII GATC 3 cut(s) 86, 473, 493
EaeI YGGCCR 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
EciI GGCGGA 4 cut(s) 22, 61, 79, 486
Eco32I GATATC 1 cut(s) 262
Eco47I GGWCC 2 cut(s) 287, 464
Eco57I CTGAAG 2 cut(s) 133, 264
EcoO109I RGGNCCY 1 cut(s) 287
EcoRII CCWGG 2 cut(s) 264, 355
EcoRV GATATC 1 cut(s) 262
FaeI CATG 3 cut(s) 84, 383, 422
FaiI YATR 4 cut(s) 82, 103, 381, 420
FaqI GGGAC 1 cut(s) 110
FatI CATG 3 cut(s) 80, 379, 418
FauI CCCGC 2 cut(s) 118, 122
FbaI TGATCA 1 cut(s) 493
Fnu4HI GCNGC 6 cut(s) 51, 75, 93, 96, 99, 240
FokI GGATG 3 cut(s) 264, 363, 386
Fsp4HI GCNGC 6 cut(s) 51, 75, 93, 96, 99, 240
FspBI CTAG 2 cut(s) 47, 227
GluI GCNGC 6 cut(s) 51, 75, 93, 96, 99, 240
GsuI CTGGAG 2 cut(s) 422, 462
HaeIII GGCC 1 cut(s) 219
HapII CCGG 3 cut(s) 216, 428, 468
Hin1II CATG 3 cut(s) 84, 383, 422
HinfI GANTC 1 cut(s) 12
HpaII CCGG 3 cut(s) 216, 428, 468
HphI GGTGA 1 cut(s) 374
Hpy188I TCNGA 2 cut(s) 35, 490
Hpy188III TCNNGA 2 cut(s) 281, 479
HpyAV CCTTC 6 cut(s) 146, 171, 181, 278, 359, 400
HpyCH4III ACNGT 1 cut(s) 441
HpyCH4V TGCA 1 cut(s) 314
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 104, 150, 232
HpyF3I CTNAG 2 cut(s) 27, 32
Hsp92II CATG 3 cut(s) 84, 383, 422
Ksp22I TGATCA 1 cut(s) 493
KspI CCGCGG 1 cut(s) 99
Kzo9I GATC 3 cut(s) 86, 473, 493
LmnI GCTCC 2 cut(s) 112, 232
LweI GCATC 1 cut(s) 341
MaeI CTAG 2 cut(s) 47, 227
MalI GATC 3 cut(s) 88, 475, 495
MboI GATC 3 cut(s) 86, 473, 493
MboII GAAGA 4 cut(s) 12, 112, 193, 196
MflI RGATCY 1 cut(s) 473
MmeI TCCRAC 2 cut(s) 328, 442
MslI CAYNNNNRTG 2 cut(s) 421, 489
MspA1I CMGCKG 2 cut(s) 98, 242
MspI CCGG 3 cut(s) 216, 428, 468
MspR9I CCNGG 3 cut(s) 266, 357, 468
MvaI CCWGG 2 cut(s) 266, 357
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 4 cut(s) 98, 104, 150, 232
NciI CCSGG 1 cut(s) 468
NdeII GATC 3 cut(s) 86, 473, 493
NlaIII CATG 3 cut(s) 84, 383, 422
NlaIV GGNNCC 1 cut(s) 466
PaqCI CACCTGC 1 cut(s) 319
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PfeI GAWTC 1 cut(s) 12
PfoI TCCNGGA 1 cut(s) 264
PkrI GCNGC 6 cut(s) 52, 76, 94, 97, 100, 241
PpuMI RGGWCCY 1 cut(s) 287
Psp5II RGGWCCY 1 cut(s) 287
Psp6I CCWGG 2 cut(s) 264, 355
PspGI CCWGG 2 cut(s) 264, 355
PspN4I GGNNCC 1 cut(s) 466
PspPI GGNCC 2 cut(s) 287, 464
PspPPI RGGWCCY 1 cut(s) 287
PstI CTGCAG 1 cut(s) 316
PsuI RGATCY 1 cut(s) 473
RseI CAYNNNNRTG 2 cut(s) 421, 489
SacII CCGCGG 1 cut(s) 99
SatI GCNGC 6 cut(s) 51, 75, 93, 96, 99, 240
Sau3AI GATC 3 cut(s) 86, 473, 493
Sau96I GGNCC 2 cut(s) 287, 464
ScrFI CCNGG 3 cut(s) 266, 357, 468
SetI ASST 7 cut(s) 33, 59, 192, 228, 237, 289, 313
SfaNI GCATC 1 cut(s) 341
SfcI CTRYAG 1 cut(s) 312
Sfr303I CCGCGG 1 cut(s) 99
SgrBI CCGCGG 1 cut(s) 99
SinI GGWCC 2 cut(s) 287, 464
SmiMI CAYNNNNRTG 2 cut(s) 421, 489
SspMI CTAG 2 cut(s) 47, 227
StyD4I CCNGG 3 cut(s) 264, 355, 466
TaaI ACNGT 1 cut(s) 441
TaqI TCGA 1 cut(s) 273
TauI GCSGC 6 cut(s) 53, 77, 95, 98, 101, 242
TfiI GAWTC 1 cut(s) 12
TspDTI ATGAA 2 cut(s) 390, 435
VpaK11BI GGWCC 2 cut(s) 287, 464
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XspI CTAG 2 cut(s) 47, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.