Rroxscaffold_2G00107970

Cytochrome C oxidase, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0004102
Physical Location & Seq
Forward (+)
31989925 .. 31993826
3902 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00107970.1

Sequence Viewer

Length: 495 bp
ATGTGGCGGAGAATCCTCTCTTCGGCTCAGCTCAGAACCCTAACCCTAGCCACCTCCTCCTCCTCCGCCGCCGCCGCCGCCGCCCCATGCCGATCCGCTCCCGCCCGCTTCTTCATCCCCAAGCCCCTTCCTCGCTACTTCAGCACCACTCCTTCTGTGGACACTTCTGTGAAGAAGAAGGTTGAGGAGATAATGCCCATTGCCACCGGCCACGAGCTAGAGGAGCTTGCAGCTGAAGTTCAGGGAAAGGATATCCTGGAAATCGACCATCCCGAAGGTCCTTTCGGCACAAAGGAAGCACCTGCAGTTGTGAAGTCCTATTACGACAAGAGAATAGTTGGATGCCCTGGTGGTGAAGGCGAGGATGAACATGATGTTGTGTGGTTTTGGCTGGAGAAGGGCAAGCCACATGAATGCCCAGTCTGCTCACAGTATTTTGTGCTTGAAGTGGTTGGACCCGGCGGATCTCCAGACCACTCTGATGATCATCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0009058 GO:0009060 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016310 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034220 GO:0034641 GO:0034654 GO:0042773 GO:0042775 GO:0042776 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990542
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
COX5B

Protein Analysis

164

Amino Acids

17.93

Weight (kDa)

5.46

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX5B PF01215 68 - 156 1.5e-16 Cytochrome c oxidase subunit Vb
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 310
Acc36I ACCTGC 1 cut(s) 310
AccBSI CCGCTC 1 cut(s) 98
AclWI GGATC 2 cut(s) 87, 472
AcoI YGGCCR 1 cut(s) 208
AcuI CTGAAG 2 cut(s) 124, 255
AfiI CCNNNNNNNGG 1 cut(s) 22
AgsI TTSAA 1 cut(s) 446
AjnI CCWGG 2 cut(s) 255, 346
AleI CACNNNNGTG 1 cut(s) 167
AluBI AGCT 4 cut(s) 31, 217, 226, 233
AluI AGCT 4 cut(s) 31, 217, 226, 233
AlwI GGATC 2 cut(s) 87, 472
AoxI GGCC 1 cut(s) 208
ApeKI GCWGC 1 cut(s) 230
AspS9I GGNCC 2 cut(s) 278, 455
AsuC2I CCSGG 1 cut(s) 459
AsuHPI GGTGA 1 cut(s) 365
AvaII GGWCC 2 cut(s) 278, 455
BarI GAAGNNNNNNTAC 2 cut(s) 305, 337
BauI CACGAG 1 cut(s) 212
BbvI GCAGC 1 cut(s) 242
BccI CCATC 1 cut(s) 276
BciT130I CCWGG 2 cut(s) 257, 348
BclI TGATCA 1 cut(s) 484
BcnI CCSGG 1 cut(s) 459
BfaI CTAG 2 cut(s) 47, 218
BfmI CTRYAG 1 cut(s) 303
BfuAI ACCTGC 1 cut(s) 310
BisI GCNGC 6 cut(s) 69, 72, 75, 78, 81, 231
BlpI GCTNAGC 1 cut(s) 27
BlsI GCNGC 6 cut(s) 70, 73, 76, 79, 82, 232
Bme1390I CCNGG 3 cut(s) 257, 348, 459
Bme18I GGWCC 2 cut(s) 278, 455
BmgT120I GGNCC 2 cut(s) 278, 455
BmiI GGNNCC 1 cut(s) 457
BmrFI CCNGG 3 cut(s) 257, 348, 459
BmrI ACTGGG 1 cut(s) 413
BmsI GCATC 1 cut(s) 332
BmuI ACTGGG 1 cut(s) 413
BpmI CTGGAG 2 cut(s) 413, 453
Bpu1102I GCTNAGC 1 cut(s) 27
BpuMI CCSGG 1 cut(s) 459
BsaBI GATNNNNATC 1 cut(s) 486
BsaJI CCNNGG 1 cut(s) 346
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 419
Bse3DI GCAATG 1 cut(s) 198
Bse8I GATNNNNATC 1 cut(s) 486
BseBI CCWGG 2 cut(s) 257, 348
BseDI CCNNGG 1 cut(s) 346
BseGI GGATG 4 cut(s) 114, 268, 347, 370
BseJI GATNNNNATC 1 cut(s) 486
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 2 cut(s) 41, 46
BseNI ACTGG 1 cut(s) 419
BseRI GAGGAG 5 cut(s) 46, 49, 52, 200, 236
BseXI GCAGC 1 cut(s) 242
BshFI GGCC 1 cut(s) 210
BsiSI CCGG 2 cut(s) 207, 459
BslI CCNNNNNNNGG 1 cut(s) 22
BsmI GAATGC 1 cut(s) 419
BsnI GGCC 1 cut(s) 210
Bsp143I GATC 3 cut(s) 92, 464, 484
Bsp1720I GCTNAGC 1 cut(s) 27
BspANI GGCC 1 cut(s) 210
BspCNI CTCAG 2 cut(s) 40, 45
BspLI GGNNCC 1 cut(s) 457
BspMAI CTGCAG 1 cut(s) 307
BspMI ACCTGC 1 cut(s) 310
BspPI GGATC 2 cut(s) 87, 472
BsrBI CCGCTC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 198
BsrFI RCCGGY 1 cut(s) 206
BsrI ACTGG 1 cut(s) 419
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 346
BssMI GATC 3 cut(s) 92, 464, 484
BssSI CACGAG 1 cut(s) 212
Bst2BI CACGAG 1 cut(s) 212
Bst2UI CCWGG 2 cut(s) 257, 348
Bst4CI ACNGT 1 cut(s) 432
Bst6I CTCTTC 1 cut(s) 25
BstC8I GCNNGC 3 cut(s) 106, 228, 404
BstDEI CTNAG 2 cut(s) 27, 32
BstF5I GGATG 4 cut(s) 114, 268, 347, 370
BstKTI GATC 3 cut(s) 95, 467, 487
BstMBI GATC 3 cut(s) 92, 464, 484
BstMWI GCNNNNNNNGC 6 cut(s) 74, 77, 80, 141, 223, 423
BstNI CCWGG 2 cut(s) 257, 348
BstSCI CCNGG 3 cut(s) 255, 346, 457
BstSFI CTRYAG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 464
BstYI RGATCY 1 cut(s) 464
BsuRI GGCC 1 cut(s) 210
BtsCI GGATG 4 cut(s) 114, 268, 347, 370
BveI ACCTGC 1 cut(s) 310
Cac8I GCNNGC 3 cut(s) 106, 228, 404
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 2 cut(s) 278, 455
CviAII CATG 3 cut(s) 87, 371, 410
DdeI CTNAG 2 cut(s) 27, 32
DpnI GATC 3 cut(s) 94, 466, 486
DpnII GATC 3 cut(s) 92, 464, 484
EaeI YGGCCR 1 cut(s) 208
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
EciI GGCGGA 3 cut(s) 22, 55, 477
Eco32I GATATC 1 cut(s) 253
Eco47I GGWCC 2 cut(s) 278, 455
Eco57I CTGAAG 2 cut(s) 124, 255
EcoO109I RGGNCCY 1 cut(s) 278
EcoRII CCWGG 2 cut(s) 255, 346
EcoRV GATATC 1 cut(s) 253
FaeI CATG 3 cut(s) 90, 374, 413
FaiI YATR 3 cut(s) 88, 372, 411
FatI CATG 3 cut(s) 86, 370, 409
FauI CCCGC 2 cut(s) 109, 113
FbaI TGATCA 1 cut(s) 484
Fnu4HI GCNGC 6 cut(s) 69, 72, 75, 78, 81, 231
FokI GGATG 4 cut(s) 101, 255, 354, 377
Fsp4HI GCNGC 6 cut(s) 69, 72, 75, 78, 81, 231
FspBI CTAG 2 cut(s) 47, 218
GluI GCNGC 6 cut(s) 69, 72, 75, 78, 81, 231
GsuI CTGGAG 2 cut(s) 413, 453
HaeIII GGCC 1 cut(s) 210
HapII CCGG 2 cut(s) 207, 459
Hin1II CATG 3 cut(s) 90, 374, 413
HinfI GANTC 1 cut(s) 12
HpaII CCGG 2 cut(s) 207, 459
HphI GGTGA 1 cut(s) 365
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 2 cut(s) 35, 481
Hpy188III TCNNGA 2 cut(s) 272, 470
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 6 cut(s) 137, 162, 172, 269, 350, 391
HpyCH4III ACNGT 1 cut(s) 432
HpyCH4V TGCA 2 cut(s) 230, 305
HpyF10VI GCNNNNNNNGC 6 cut(s) 74, 77, 80, 141, 223, 423
HpyF3I CTNAG 2 cut(s) 27, 32
Hsp92II CATG 3 cut(s) 90, 374, 413
Ksp22I TGATCA 1 cut(s) 484
Kzo9I GATC 3 cut(s) 92, 464, 484
LmnI GCTCC 2 cut(s) 103, 223
Lsp1109I GCAGC 1 cut(s) 242
LweI GCATC 1 cut(s) 332
MaeI CTAG 2 cut(s) 47, 218
MalI GATC 3 cut(s) 94, 466, 486
MbiI CCGCTC 1 cut(s) 98
MboI GATC 3 cut(s) 92, 464, 484
MboII GAAGA 4 cut(s) 12, 103, 184, 187
MflI RGATCY 1 cut(s) 464
MmeI TCCRAC 2 cut(s) 319, 433
MnlI CCTC 9 cut(s) 26, 64, 67, 70, 73, 141, 178, 214, 355
MslI CAYNNNNRTG 3 cut(s) 167, 412, 480
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 2 cut(s) 207, 459
MspR9I CCNGG 3 cut(s) 257, 348, 459
Mva1269I GAATGC 1 cut(s) 419
MvaI CCWGG 2 cut(s) 257, 348
MwoI GCNNNNNNNGC 6 cut(s) 74, 77, 80, 141, 223, 423
NciI CCSGG 1 cut(s) 459
NdeII GATC 3 cut(s) 92, 464, 484
NlaIII CATG 3 cut(s) 90, 374, 413
NlaIV GGNNCC 1 cut(s) 457
OliI CACNNNNGTG 1 cut(s) 167
PaqCI CACCTGC 1 cut(s) 310
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PctI GAATGC 1 cut(s) 419
PfeI GAWTC 1 cut(s) 12
PfoI TCCNGGA 1 cut(s) 255
PkrI GCNGC 6 cut(s) 70, 73, 76, 79, 82, 232
PpuMI RGGWCCY 1 cut(s) 278
Psp5II RGGWCCY 1 cut(s) 278
Psp6I CCWGG 2 cut(s) 255, 346
PspGI CCWGG 2 cut(s) 255, 346
PspN4I GGNNCC 1 cut(s) 457
PspPI GGNCC 2 cut(s) 278, 455
PspPPI RGGWCCY 1 cut(s) 278
PstI CTGCAG 1 cut(s) 307
PsuI RGATCY 1 cut(s) 464
PvuII CAGCTG 1 cut(s) 233
RseI CAYNNNNRTG 3 cut(s) 167, 412, 480
SatI GCNGC 6 cut(s) 69, 72, 75, 78, 81, 231
Sau3AI GATC 3 cut(s) 92, 464, 484
Sau96I GGNCC 2 cut(s) 278, 455
ScrFI CCNGG 3 cut(s) 257, 348, 459
SetI ASST 8 cut(s) 33, 56, 183, 219, 228, 235, 280, 304
SfaNI GCATC 1 cut(s) 332
SfcI CTRYAG 1 cut(s) 303
SinI GGWCC 2 cut(s) 278, 455
SmiMI CAYNNNNRTG 3 cut(s) 167, 412, 480
SspMI CTAG 2 cut(s) 47, 218
StyD4I CCNGG 3 cut(s) 255, 346, 457
TaaI ACNGT 1 cut(s) 432
TaqI TCGA 1 cut(s) 264
TauI GCSGC 5 cut(s) 71, 74, 77, 80, 83
TfiI GAWTC 1 cut(s) 12
TseI GCWGC 1 cut(s) 230
TspDTI ATGAA 3 cut(s) 103, 381, 426
VpaK11BI GGWCC 2 cut(s) 278, 455
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XspI CTAG 2 cut(s) 47, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.