RchiOBHm_Chr2g0136811

Cytochrome C oxidase, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004102
Physical Location & Seq
Reverse (-)
54092152 .. 54096368
4217 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50759

Sequence Viewer

Length: 507 bp
ATGTGGCGGAGAATCCTCTCTTCGGCTCAGCTCAGAACCCTAACCCTAGCCGCCTCCTCCTCCTCCGCCGCCGCCGCCGCCCCATGCCGATCCGCCGCCGCCGCATCCTCTCCCGCCCGCTTCTTCATCCCCAAGCCCCTTCCTCGCTACTTCAGCACCACTCCTTCTGTGGACACTACTGTGAAGAAGAAGGTTGAGGAGATAATGCCCATTGCCACCGGCCACGAGCTAGAGGAGCTTGCAGCTGAAGTTCAGGGAAAGGATATCCTGGAAATCGACCATCCCGAAGGTCCTTTCGGCACAAAGGAAGCACCTGCAGTTGTGAAGTCCTATTACGACAAGAGAATAGTTGGATGCCCTGGTGGTGAAGGCGAGGATGAACATGATGTTGTGTGGTTTTGGCTGGAGAAGGGCAAGCCACATGAATGCCCAGTTTGCTCACAGTATTTTGTGCTTGAAGTGGTTGGACCCGGCGGATCTCCAGACCACTCTGATGATCATCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0009058 GO:0009060 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016310 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034220 GO:0034641 GO:0034654 GO:0042773 GO:0042775 GO:0042776 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990542
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
COX5B

Protein Analysis

168

Amino Acids

18.23

Weight (kDa)

5.46

Isoelectric Point (pI)

50.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX5B PF01215 72 - 160 1.6e-16 Cytochrome c oxidase subunit Vb
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 322
Acc36I ACCTGC 1 cut(s) 322
AclWI GGATC 2 cut(s) 84, 484
AcoI YGGCCR 1 cut(s) 220
AcuI CTGAAG 2 cut(s) 136, 267
AfiI CCNNNNNNNGG 1 cut(s) 22
AgsI TTSAA 1 cut(s) 458
AjnI CCWGG 2 cut(s) 267, 358
AleI CACNNNNGTG 1 cut(s) 179
AluBI AGCT 4 cut(s) 31, 229, 238, 245
AluI AGCT 4 cut(s) 31, 229, 238, 245
AlwI GGATC 2 cut(s) 84, 484
AoxI GGCC 1 cut(s) 220
ApeKI GCWGC 1 cut(s) 242
AspS9I GGNCC 2 cut(s) 290, 467
AsuC2I CCSGG 1 cut(s) 471
AsuHPI GGTGA 1 cut(s) 377
AvaII GGWCC 2 cut(s) 290, 467
BarI GAAGNNNNNNTAC 2 cut(s) 317, 349
BauI CACGAG 1 cut(s) 224
BbvI GCAGC 1 cut(s) 254
BccI CCATC 1 cut(s) 288
BciT130I CCWGG 2 cut(s) 269, 360
BclI TGATCA 1 cut(s) 496
BcnI CCSGG 1 cut(s) 471
BfaI CTAG 2 cut(s) 47, 230
BfmI CTRYAG 1 cut(s) 315
BfuAI ACCTGC 1 cut(s) 322
BisI GCNGC 9 cut(s) 51, 69, 72, 75, 78, 96, 99, 102, 243
BlpI GCTNAGC 1 cut(s) 27
BlsI GCNGC 9 cut(s) 52, 70, 73, 76, 79, 97, 100, 103, 244
Bme1390I CCNGG 3 cut(s) 269, 360, 471
Bme18I GGWCC 2 cut(s) 290, 467
BmgT120I GGNCC 2 cut(s) 290, 467
BmiI GGNNCC 1 cut(s) 469
BmrFI CCNGG 3 cut(s) 269, 360, 471
BmrI ACTGGG 1 cut(s) 425
BmsI GCATC 2 cut(s) 113, 344
BmuI ACTGGG 1 cut(s) 425
BpmI CTGGAG 2 cut(s) 425, 465
Bpu1102I GCTNAGC 1 cut(s) 27
BpuMI CCSGG 1 cut(s) 471
BsaBI GATNNNNATC 1 cut(s) 498
BsaJI CCNNGG 1 cut(s) 358
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse118I RCCGGY 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 431
Bse3DI GCAATG 1 cut(s) 210
Bse8I GATNNNNATC 1 cut(s) 498
BseBI CCWGG 2 cut(s) 269, 360
BseDI CCNNGG 1 cut(s) 358
BseGI GGATG 5 cut(s) 104, 126, 280, 359, 382
BseJI GATNNNNATC 1 cut(s) 498
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMI GCAATG 1 cut(s) 210
BseMII CTCAG 2 cut(s) 41, 46
BseNI ACTGG 1 cut(s) 431
BseRI GAGGAG 5 cut(s) 46, 49, 52, 212, 248
BseXI GCAGC 1 cut(s) 254
BshFI GGCC 1 cut(s) 222
BsiSI CCGG 2 cut(s) 219, 471
BslI CCNNNNNNNGG 1 cut(s) 22
BsmI GAATGC 1 cut(s) 431
BsnI GGCC 1 cut(s) 222
Bsp143I GATC 3 cut(s) 89, 476, 496
Bsp1720I GCTNAGC 1 cut(s) 27
BspANI GGCC 1 cut(s) 222
BspCNI CTCAG 2 cut(s) 40, 45
BspLI GGNNCC 1 cut(s) 469
BspMAI CTGCAG 1 cut(s) 319
BspMI ACCTGC 1 cut(s) 322
BspPI GGATC 2 cut(s) 84, 484
BsrDI GCAATG 1 cut(s) 210
BsrFI RCCGGY 1 cut(s) 218
BsrI ACTGG 1 cut(s) 431
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 358
BssMI GATC 3 cut(s) 89, 476, 496
BssSI CACGAG 1 cut(s) 224
Bst2BI CACGAG 1 cut(s) 224
Bst2UI CCWGG 2 cut(s) 269, 360
Bst4CI ACNGT 2 cut(s) 181, 444
Bst6I CTCTTC 1 cut(s) 25
BstC8I GCNNGC 3 cut(s) 118, 240, 416
BstDEI CTNAG 2 cut(s) 27, 32
BstF5I GGATG 5 cut(s) 104, 126, 280, 359, 382
BstKTI GATC 3 cut(s) 92, 479, 499
BstMBI GATC 3 cut(s) 89, 476, 496
BstMWI GCNNNNNNNGC 6 cut(s) 74, 77, 101, 153, 235, 435
BstNI CCWGG 2 cut(s) 269, 360
BstSCI CCNGG 3 cut(s) 267, 358, 469
BstSFI CTRYAG 1 cut(s) 315
BstV1I GCAGC 1 cut(s) 254
BstX2I RGATCY 1 cut(s) 476
BstYI RGATCY 1 cut(s) 476
BsuRI GGCC 1 cut(s) 222
BtsCI GGATG 5 cut(s) 104, 126, 280, 359, 382
BveI ACCTGC 1 cut(s) 322
Cac8I GCNNGC 3 cut(s) 118, 240, 416
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 2 cut(s) 290, 467
CviAII CATG 3 cut(s) 84, 383, 422
DdeI CTNAG 2 cut(s) 27, 32
DpnI GATC 3 cut(s) 91, 478, 498
DpnII GATC 3 cut(s) 89, 476, 496
EaeI YGGCCR 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
EciI GGCGGA 4 cut(s) 22, 55, 82, 489
Eco32I GATATC 1 cut(s) 265
Eco47I GGWCC 2 cut(s) 290, 467
Eco57I CTGAAG 2 cut(s) 136, 267
EcoO109I RGGNCCY 1 cut(s) 290
EcoRII CCWGG 2 cut(s) 267, 358
EcoRV GATATC 1 cut(s) 265
FaeI CATG 3 cut(s) 87, 386, 425
FaiI YATR 3 cut(s) 85, 384, 423
FatI CATG 3 cut(s) 83, 382, 421
FauI CCCGC 2 cut(s) 121, 125
FbaI TGATCA 1 cut(s) 496
Fnu4HI GCNGC 9 cut(s) 51, 69, 72, 75, 78, 96, 99, 102, 243
FokI GGATG 5 cut(s) 91, 113, 267, 366, 389
Fsp4HI GCNGC 9 cut(s) 51, 69, 72, 75, 78, 96, 99, 102, 243
FspBI CTAG 2 cut(s) 47, 230
GluI GCNGC 9 cut(s) 51, 69, 72, 75, 78, 96, 99, 102, 243
GsuI CTGGAG 2 cut(s) 425, 465
HaeIII GGCC 1 cut(s) 222
HapII CCGG 2 cut(s) 219, 471
Hin1II CATG 3 cut(s) 87, 386, 425
HinfI GANTC 1 cut(s) 12
HpaII CCGG 2 cut(s) 219, 471
HphI GGTGA 1 cut(s) 377
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 2 cut(s) 35, 493
Hpy188III TCNNGA 2 cut(s) 284, 482
Hpy8I GTNNAC 1 cut(s) 172
HpyAV CCTTC 6 cut(s) 149, 174, 184, 281, 362, 403
HpyCH4III ACNGT 2 cut(s) 181, 444
HpyCH4V TGCA 2 cut(s) 242, 317
HpyF10VI GCNNNNNNNGC 6 cut(s) 74, 77, 101, 153, 235, 435
HpyF3I CTNAG 2 cut(s) 27, 32
Hsp92II CATG 3 cut(s) 87, 386, 425
Ksp22I TGATCA 1 cut(s) 496
Kzo9I GATC 3 cut(s) 89, 476, 496
LmnI GCTCC 1 cut(s) 235
Lsp1109I GCAGC 1 cut(s) 254
LweI GCATC 2 cut(s) 113, 344
MaeI CTAG 2 cut(s) 47, 230
MalI GATC 3 cut(s) 91, 478, 498
MboI GATC 3 cut(s) 89, 476, 496
MboII GAAGA 4 cut(s) 12, 115, 196, 199
MflI RGATCY 1 cut(s) 476
MmeI TCCRAC 2 cut(s) 331, 445
MslI CAYNNNNRTG 3 cut(s) 179, 424, 492
MspA1I CMGCKG 1 cut(s) 245
MspI CCGG 2 cut(s) 219, 471
MspR9I CCNGG 3 cut(s) 269, 360, 471
Mva1269I GAATGC 1 cut(s) 431
MvaI CCWGG 2 cut(s) 269, 360
MwoI GCNNNNNNNGC 6 cut(s) 74, 77, 101, 153, 235, 435
NciI CCSGG 1 cut(s) 471
NdeII GATC 3 cut(s) 89, 476, 496
NlaIII CATG 3 cut(s) 87, 386, 425
NlaIV GGNNCC 1 cut(s) 469
OliI CACNNNNGTG 1 cut(s) 179
PaqCI CACCTGC 1 cut(s) 322
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PctI GAATGC 1 cut(s) 431
PfeI GAWTC 1 cut(s) 12
PfoI TCCNGGA 1 cut(s) 267
PkrI GCNGC 9 cut(s) 52, 70, 73, 76, 79, 97, 100, 103, 244
PpuMI RGGWCCY 1 cut(s) 290
Psp5II RGGWCCY 1 cut(s) 290
Psp6I CCWGG 2 cut(s) 267, 358
PspGI CCWGG 2 cut(s) 267, 358
PspN4I GGNNCC 1 cut(s) 469
PspPI GGNCC 2 cut(s) 290, 467
PspPPI RGGWCCY 1 cut(s) 290
PstI CTGCAG 1 cut(s) 319
PsuI RGATCY 1 cut(s) 476
PvuII CAGCTG 1 cut(s) 245
RseI CAYNNNNRTG 3 cut(s) 179, 424, 492
SatI GCNGC 9 cut(s) 51, 69, 72, 75, 78, 96, 99, 102, 243
Sau3AI GATC 3 cut(s) 89, 476, 496
Sau96I GGNCC 2 cut(s) 290, 467
ScrFI CCNGG 3 cut(s) 269, 360, 471
SetI ASST 7 cut(s) 33, 195, 231, 240, 247, 292, 316
SfaNI GCATC 2 cut(s) 113, 344
SfcI CTRYAG 1 cut(s) 315
SinI GGWCC 2 cut(s) 290, 467
SmiMI CAYNNNNRTG 3 cut(s) 179, 424, 492
SspMI CTAG 2 cut(s) 47, 230
StyD4I CCNGG 3 cut(s) 267, 358, 469
TaaI ACNGT 2 cut(s) 181, 444
TaqI TCGA 1 cut(s) 276
TauI GCSGC 8 cut(s) 53, 71, 74, 77, 80, 98, 101, 104
TfiI GAWTC 1 cut(s) 12
TseI GCWGC 1 cut(s) 242
TspDTI ATGAA 3 cut(s) 115, 393, 438
VpaK11BI GGWCC 2 cut(s) 290, 467
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XspI CTAG 2 cut(s) 47, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.