FvH4_2g29600

Cytochrome C oxidase, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0004102
Physical Location & Seq
Reverse (-)
22925429 .. 22926561
1133 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g29600.t1

Sequence Viewer

Length: 462 bp
ATGTGGAGGCGCGTGGTGTGTTGTTCCTCCTCGGCCCTAGCGTCATACCGATCCTCTCCGTCTCTCAATCTCCACCGTCGATTTCTAATCTCTTCCGCATCCTCTCCTTCCACTCCGCCGCCGTTCCAGCGATCCCCCAATCTCTCCGCCTCCGGTTTGAAGAAGAAGGTTGAGGATATCATGCCCATTGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTTGAGGGCAGGGACATTCTTGAGATCAATCATCCAGTCGGCCCTTTCGGTACCAAGGAAGCACCTGCTGTAGTCAAGTCGTACTACGACAAAAGAATAGTTGGATGCCCCGGTGTTGAAGGAGAGGGTGAGCACGATGTTGTGTGGTTCTGGCTGGAGAAAGGCAAGCCACATGAATGCCCAGTCTGTTCCCAATATTTCAAGCTGGAAGTAGTTGGCCCAGGAGGTCCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0009058 GO:0009060 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016310 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034220 GO:0034641 GO:0034654 GO:0042773 GO:0042775 GO:0042776 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990542
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
COX5B

Protein Analysis

154

Amino Acids

16.88

Weight (kDa)

7.0

Isoelectric Point (pI)

62.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX5B PF01215 64 - 149 1.3e-19 Cytochrome c oxidase subunit Vb
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 298
Acc36I ACCTGC 1 cut(s) 298
Acc65I GGTACC 1 cut(s) 275
AccB1I GGYRCC 1 cut(s) 275
AccII CGCG 2 cut(s) 12, 207
AciI CCGC 4 cut(s) 96, 116, 119, 147
AclWI GGATC 2 cut(s) 45, 126
AcuI CTGAAG 1 cut(s) 200
AfaI GTAC 2 cut(s) 277, 308
AgsI TTSAA 3 cut(s) 160, 344, 427
AjnI CCWGG 1 cut(s) 445
AluBI AGCT 3 cut(s) 214, 226, 430
AluI AGCT 3 cut(s) 214, 226, 430
Alw21I GWGCWC 1 cut(s) 360
Alw26I GTCTC 1 cut(s) 66
AlwI GGATC 2 cut(s) 45, 126
AoxI GGCC 3 cut(s) 33, 265, 442
Asp718I GGTACC 1 cut(s) 275
AspLEI GCGC 2 cut(s) 12, 207
AspS9I GGNCC 4 cut(s) 34, 266, 443, 452
AsuC2I CCSGG 1 cut(s) 336
AsuHPI GGTGA 1 cut(s) 365
AvaII GGWCC 1 cut(s) 452
BanI GGYRCC 1 cut(s) 275
BauI CACGAG 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 360
BceAI ACGGC 1 cut(s) 106
BciT130I CCWGG 1 cut(s) 447
BcnI CCSGG 1 cut(s) 336
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 1 cut(s) 38
BfmI CTRYAG 1 cut(s) 294
BfuAI ACCTGC 1 cut(s) 298
BisI GCNGC 1 cut(s) 119
BlpI GCTNAGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 120
Bme1390I CCNGG 2 cut(s) 336, 447
Bme18I GGWCC 1 cut(s) 452
BmgT120I GGNCC 4 cut(s) 34, 266, 443, 452
BmiI GGNNCC 1 cut(s) 277
BmrFI CCNGG 2 cut(s) 336, 447
BmrI ACTGGG 1 cut(s) 401
BmsI GCATC 2 cut(s) 107, 320
BmuI ACTGGG 1 cut(s) 401
BpmI CTGGAG 1 cut(s) 401
Bpu1102I GCTNAGC 1 cut(s) 222
BpuEI CTTGAG 2 cut(s) 248, 266
BpuMI CCSGG 1 cut(s) 336
BsaJI CCNNGG 4 cut(s) 30, 279, 334, 445
BsaWI WCCGGW 1 cut(s) 152
Bse1I ACTGG 3 cut(s) 199, 260, 407
Bse3DI GCAATG 1 cut(s) 186
BseBI CCWGG 1 cut(s) 447
BseDI CCNNGG 4 cut(s) 30, 279, 334, 445
BseGI GGATG 3 cut(s) 98, 256, 335
BseMI GCAATG 1 cut(s) 186
BseMII CTCAG 1 cut(s) 213
BseNI ACTGG 3 cut(s) 199, 260, 407
BseRI GAGGAG 2 cut(s) 19, 224
Bsh1236I CGCG 2 cut(s) 12, 207
BshFI GGCC 3 cut(s) 35, 267, 444
BshNI GGYRCC 1 cut(s) 275
BsiHKAI GWGCWC 1 cut(s) 360
BsiSI CCGG 2 cut(s) 153, 336
BslFI GGGAC 1 cut(s) 251
BsmAI GTCTC 1 cut(s) 66
BsmBI CGTCTC 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 251
BsmI GAATGC 1 cut(s) 407
BsnI GGCC 3 cut(s) 35, 267, 444
Bsp1286I GDGCHC 1 cut(s) 360
Bsp143I GATC 3 cut(s) 50, 131, 249
Bsp1720I GCTNAGC 1 cut(s) 222
BspACI CCGC 4 cut(s) 96, 116, 119, 147
BspANI GGCC 3 cut(s) 35, 267, 444
BspCNI CTCAG 1 cut(s) 214
BspFNI CGCG 2 cut(s) 12, 207
BspLI GGNNCC 1 cut(s) 277
BspMI ACCTGC 1 cut(s) 298
BspPI GGATC 2 cut(s) 45, 126
BspT107I GGYRCC 1 cut(s) 275
BsrDI GCAATG 1 cut(s) 186
BsrI ACTGG 3 cut(s) 199, 260, 407
BssECI CCNNGG 4 cut(s) 30, 279, 334, 445
BssMI GATC 3 cut(s) 50, 131, 249
BssSI CACGAG 1 cut(s) 200
BssT1I CCWWGG 1 cut(s) 279
Bst2BI CACGAG 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 447
Bst4CI ACNGT 1 cut(s) 77
Bst6I CTCTTC 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 392
BstDEI CTNAG 1 cut(s) 222
BstF5I GGATG 3 cut(s) 98, 256, 335
BstFNI CGCG 2 cut(s) 12, 207
BstHHI GCGC 2 cut(s) 12, 207
BstKTI GATC 3 cut(s) 53, 134, 252
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 3 cut(s) 50, 131, 249
BstMWI GCNNNNNNNGC 2 cut(s) 127, 211
BstNI CCWGG 1 cut(s) 447
BstSCI CCNGG 2 cut(s) 334, 445
BstSFI CTRYAG 1 cut(s) 294
BstUI CGCG 2 cut(s) 12, 207
BsuRI GGCC 3 cut(s) 35, 267, 444
BtsCI GGATG 3 cut(s) 98, 256, 335
BveI ACCTGC 1 cut(s) 298
Cac8I GCNNGC 1 cut(s) 392
CfoI GCGC 2 cut(s) 12, 207
Cfr13I GGNCC 4 cut(s) 34, 266, 443, 452
CseI GACGC 1 cut(s) 30
Csp6I GTAC 2 cut(s) 276, 307
CviAII CATG 2 cut(s) 181, 398
CviJI RGCY 9 cut(s) 35, 214, 221, 226, 267, 379, 394, 430, 444
CviKI_1 RGCY 9 cut(s) 35, 214, 221, 226, 267, 379, 394, 430, 444
CviQI GTAC 2 cut(s) 276, 307
DdeI CTNAG 1 cut(s) 222
DpnI GATC 3 cut(s) 52, 133, 251
DpnII GATC 3 cut(s) 50, 131, 249
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
EciI GGCGGA 2 cut(s) 105, 136
Eco130I CCWWGG 1 cut(s) 279
Eco32I GATATC 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 452
Eco57I CTGAAG 1 cut(s) 200
EcoO109I RGGNCCY 1 cut(s) 452
EcoRII CCWGG 1 cut(s) 445
EcoRV GATATC 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 279
Esp3I CGTCTC 1 cut(s) 66
FaeI CATG 2 cut(s) 184, 401
FaiI YATR 3 cut(s) 46, 182, 399
FaqI GGGAC 1 cut(s) 251
FatI CATG 2 cut(s) 180, 397
Fnu4HI GCNGC 1 cut(s) 119
FokI GGATG 3 cut(s) 85, 243, 342
Fsp4HI GCNGC 1 cut(s) 119
FspBI CTAG 1 cut(s) 38
GlaI GCGC 2 cut(s) 11, 206
GluI GCNGC 1 cut(s) 119
GsuI CTGGAG 1 cut(s) 401
HaeIII GGCC 3 cut(s) 35, 267, 444
HapII CCGG 2 cut(s) 153, 336
HgaI GACGC 1 cut(s) 30
HhaI GCGC 2 cut(s) 12, 207
Hin1II CATG 2 cut(s) 184, 401
Hin6I GCGC 2 cut(s) 10, 205
HinP1I GCGC 2 cut(s) 10, 205
HpaII CCGG 2 cut(s) 153, 336
HphI GGTGA 1 cut(s) 365
Hpy188III TCNNGA 2 cut(s) 200, 245
Hpy99I CGWCG 1 cut(s) 81
HpyAV CCTTC 3 cut(s) 117, 160, 338
HpyCH4III ACNGT 1 cut(s) 77
HpyF10VI GCNNNNNNNGC 2 cut(s) 127, 211
HpyF3I CTNAG 1 cut(s) 222
Hsp92II CATG 2 cut(s) 184, 401
HspAI GCGC 2 cut(s) 10, 205
KpnI GGTACC 1 cut(s) 279
Kzo9I GATC 3 cut(s) 50, 131, 249
LmnI GCTCC 1 cut(s) 211
LweI GCATC 2 cut(s) 107, 320
MaeI CTAG 1 cut(s) 38
MaeIII GTNAC 1 cut(s) 197
MalI GATC 3 cut(s) 52, 133, 251
MboI GATC 3 cut(s) 50, 131, 249
MboII GAAGA 3 cut(s) 84, 172, 175
MhlI GDGCHC 1 cut(s) 360
MmeI TCCRAC 1 cut(s) 307
MslI CAYNNNNRTG 1 cut(s) 400
MspI CCGG 2 cut(s) 153, 336
MspR9I CCNGG 2 cut(s) 336, 447
Mva1269I GAATGC 1 cut(s) 407
MvaI CCWGG 1 cut(s) 447
MvnI CGCG 2 cut(s) 12, 207
MwoI GCNNNNNNNGC 2 cut(s) 127, 211
NciI CCSGG 1 cut(s) 336
NdeII GATC 3 cut(s) 50, 131, 249
NlaIII CATG 2 cut(s) 184, 401
NlaIV GGNNCC 1 cut(s) 277
NmeAIII GCCGAG 1 cut(s) 11
NmuCI GTSAC 1 cut(s) 197
PaqCI CACCTGC 1 cut(s) 298
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PctI GAATGC 1 cut(s) 407
PkrI GCNGC 1 cut(s) 120
PpuMI RGGWCCY 1 cut(s) 452
Psp5II RGGWCCY 1 cut(s) 452
Psp6I CCWGG 1 cut(s) 445
PspGI CCWGG 1 cut(s) 445
PspN4I GGNNCC 1 cut(s) 277
PspPI GGNCC 4 cut(s) 34, 266, 443, 452
PspPPI RGGWCCY 1 cut(s) 452
RsaI GTAC 2 cut(s) 277, 308
RsaNI GTAC 2 cut(s) 276, 307
RseI CAYNNNNRTG 1 cut(s) 400
SatI GCNGC 1 cut(s) 119
Sau3AI GATC 3 cut(s) 50, 131, 249
Sau96I GGNCC 4 cut(s) 34, 266, 443, 452
ScrFI CCNGG 2 cut(s) 336, 447
SduI GDGCHC 1 cut(s) 360
SetI ASST 6 cut(s) 171, 216, 228, 292, 432, 454
SfaNI GCATC 2 cut(s) 107, 320
SfcI CTRYAG 1 cut(s) 294
SinI GGWCC 1 cut(s) 452
SmiMI CAYNNNNRTG 1 cut(s) 400
SmlI CTYRAG 2 cut(s) 227, 245
SmoI CTYRAG 2 cut(s) 227, 245
SsiI CCGC 4 cut(s) 96, 116, 119, 147
SspI AATATT 1 cut(s) 422
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 2 cut(s) 334, 445
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 77
TaqI TCGA 1 cut(s) 79
TauI GCSGC 1 cut(s) 121
TseFI GTSAC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 414
TspGWI ACGGA 1 cut(s) 48
VpaK11BI GGWCC 1 cut(s) 452
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.