Rroxscaffold_7G00169510

Cytochrome C oxidase, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0004102
Physical Location & Seq
Forward (+)
10116010 .. 10117861
1852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00169510.1

Sequence Viewer

Length: 492 bp
ATGTGGAGGCGAGTGGTGTCTTGTTCGACCTCGGCTCAATTCCAAGCCCTAGGCTCATGCAGATCTTCTCCATCTCTCAACCTCACCCGTCGATTTCTAATCTCCTCAGCATCCACGCCTTCCACTCCCCCGCCGTTTCAGCGATCCCCCAATCTCTCCTCCCCCGCCTCCGGTTTGAAGAAGAAGGTTGAGGATGTTATGCCCATTGCTACCGGTCACGAGCGCGAGGAACTTCAGGCTGAGCTTCAGGGGAGGGACATTCTTGAGATCAATCATCCAGTCGGTCCTTTTGGTACTAAGGAAGCACCTGCTATAGTCAAGTCCTACTATGACAGGAGAATAGTTGGCTGTCCTGGTGTTGAAGGAGAGGATGAGCATGATGTTGTGTGGTTTTGGCTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGTTCCCAATATTTCAAGCTGGAAGTTGTTGGCCCAGGAGGTCCTCCAGATGGTCATCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0009058 GO:0009060 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016310 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034220 GO:0034641 GO:0034654 GO:0042773 GO:0042775 GO:0042776 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990542
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
COX5B

Protein Analysis

163

Amino Acids

17.94

Weight (kDa)

6.59

Isoelectric Point (pI)

68.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX5B PF01215 69 - 157 4.8e-20 Cytochrome c oxidase subunit Vb
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 316
Acc36I ACCTGC 1 cut(s) 316
AccII CGCG 1 cut(s) 225
AciI CCGC 2 cut(s) 131, 165
AclWI GGATC 1 cut(s) 138
AcuI CTGAAG 2 cut(s) 218, 230
AfaI GTAC 1 cut(s) 295
AfiI CCNNNNNNNGG 2 cut(s) 170, 479
AgeI ACCGGT 1 cut(s) 212
AgsI TTSAA 3 cut(s) 178, 362, 445
AjnI CCWGG 2 cut(s) 352, 463
AluBI AGCT 2 cut(s) 244, 448
AluI AGCT 2 cut(s) 244, 448
AlwI GGATC 1 cut(s) 138
AoxI GGCC 1 cut(s) 460
AsiGI ACCGGT 1 cut(s) 212
AspA2I CCTAGG 1 cut(s) 49
AspLEI GCGC 1 cut(s) 225
AspS9I GGNCC 3 cut(s) 284, 461, 470
AsuHPI GGTGA 1 cut(s) 76
AvaII GGWCC 2 cut(s) 284, 470
AvrII CCTAGG 1 cut(s) 49
BauI CACGAG 1 cut(s) 218
BbvCI CCTCAGC 1 cut(s) 106
BccI CCATC 2 cut(s) 79, 473
BceAI ACGGC 1 cut(s) 118
BciT130I CCWGG 2 cut(s) 354, 465
BfaI CTAG 1 cut(s) 50
BfmI CTRYAG 1 cut(s) 312
BfuAI ACCTGC 1 cut(s) 316
BglII AGATCT 1 cut(s) 62
BlnI CCTAGG 1 cut(s) 49
BlpI GCTNAGC 1 cut(s) 240
Bme1390I CCNGG 2 cut(s) 354, 465
Bme18I GGWCC 2 cut(s) 284, 470
BmgT120I GGNCC 3 cut(s) 284, 461, 470
BmrFI CCNGG 2 cut(s) 354, 465
BmsI GCATC 1 cut(s) 119
BpmI CTGGAG 2 cut(s) 419, 459
Bpu10I CCTNAGC 1 cut(s) 106
Bpu1102I GCTNAGC 1 cut(s) 240
BpuEI CTTGAG 1 cut(s) 284
BsaBI GATNNNNATC 1 cut(s) 483
BsaJI CCNNGG 3 cut(s) 30, 49, 463
BsaWI WCCGGW 2 cut(s) 170, 212
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 479
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 278
Bse3DI GCAATG 1 cut(s) 204
Bse8I GATNNNNATC 1 cut(s) 483
BseBI CCWGG 2 cut(s) 354, 465
BseDI CCNNGG 3 cut(s) 30, 49, 463
BseGI GGATG 4 cut(s) 110, 199, 274, 376
BseJI GATNNNNATC 1 cut(s) 483
BseLI CCNNNNNNNGG 2 cut(s) 170, 479
BseMI GCAATG 1 cut(s) 204
BseMII CTCAG 2 cut(s) 120, 231
BseNI ACTGG 1 cut(s) 278
BseRI GAGGAG 2 cut(s) 94, 148
Bsh1236I CGCG 1 cut(s) 225
BshFI GGCC 1 cut(s) 462
BshTI ACCGGT 1 cut(s) 212
BsiSI CCGG 2 cut(s) 171, 213
BslFI GGGAC 1 cut(s) 269
BslI CCNNNNNNNGG 2 cut(s) 170, 479
BsmFI GGGAC 1 cut(s) 269
BsmI GAATGC 1 cut(s) 425
BsnI GGCC 1 cut(s) 462
Bsp143I GATC 3 cut(s) 62, 143, 267
Bsp1720I GCTNAGC 1 cut(s) 240
BspACI CCGC 2 cut(s) 131, 165
BspANI GGCC 1 cut(s) 462
BspCNI CTCAG 2 cut(s) 119, 232
BspFNI CGCG 1 cut(s) 225
BspMI ACCTGC 1 cut(s) 316
BspPI GGATC 1 cut(s) 138
BsrDI GCAATG 1 cut(s) 204
BsrFI RCCGGY 1 cut(s) 212
BsrI ACTGG 1 cut(s) 278
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 3 cut(s) 30, 49, 463
BssMI GATC 3 cut(s) 62, 143, 267
BssSI CACGAG 1 cut(s) 218
BssT1I CCWWGG 1 cut(s) 49
Bst2BI CACGAG 1 cut(s) 218
Bst2UI CCWGG 2 cut(s) 354, 465
BstC8I GCNNGC 1 cut(s) 410
BstDEI CTNAG 3 cut(s) 106, 240, 297
BstF5I GGATG 4 cut(s) 110, 199, 274, 376
BstFNI CGCG 1 cut(s) 225
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 3 cut(s) 65, 146, 270
BstMBI GATC 3 cut(s) 62, 143, 267
BstMWI GCNNNNNNNGC 1 cut(s) 139
BstNI CCWGG 2 cut(s) 354, 465
BstSCI CCNGG 2 cut(s) 352, 463
BstSFI CTRYAG 1 cut(s) 312
BstUI CGCG 1 cut(s) 225
BstX2I RGATCY 1 cut(s) 62
BstYI RGATCY 1 cut(s) 62
BsuRI GGCC 1 cut(s) 462
BtsCI GGATG 4 cut(s) 110, 199, 274, 376
BveI ACCTGC 1 cut(s) 316
Cac8I GCNNGC 1 cut(s) 410
CfoI GCGC 1 cut(s) 225
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 3 cut(s) 284, 461, 470
Csp6I GTAC 1 cut(s) 294
CspAI ACCGGT 1 cut(s) 212
CviAII CATG 3 cut(s) 57, 377, 416
CviQI GTAC 1 cut(s) 294
DdeI CTNAG 3 cut(s) 106, 240, 297
DpnI GATC 3 cut(s) 64, 145, 269
DpnII GATC 3 cut(s) 62, 143, 267
Eco130I CCWWGG 1 cut(s) 49
Eco47I GGWCC 2 cut(s) 284, 470
Eco57I CTGAAG 2 cut(s) 218, 230
EcoO109I RGGNCCY 1 cut(s) 470
EcoRII CCWGG 2 cut(s) 352, 463
EcoT14I CCWWGG 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 49
FaeI CATG 3 cut(s) 60, 380, 419
FaiI YATR 6 cut(s) 58, 200, 314, 330, 378, 417
FaqI GGGAC 1 cut(s) 269
FatI CATG 3 cut(s) 56, 376, 415
FauI CCCGC 2 cut(s) 138, 172
FokI GGATG 4 cut(s) 97, 206, 261, 383
FspBI CTAG 1 cut(s) 50
GlaI GCGC 1 cut(s) 224
GsuI CTGGAG 2 cut(s) 419, 459
HaeIII GGCC 1 cut(s) 462
HapII CCGG 2 cut(s) 171, 213
HhaI GCGC 1 cut(s) 225
Hin1II CATG 3 cut(s) 60, 380, 419
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HpaII CCGG 2 cut(s) 171, 213
HphI GGTGA 1 cut(s) 76
Hpy188III TCNNGA 3 cut(s) 218, 263, 476
Hpy99I CGWCG 1 cut(s) 93
HpyAV CCTTC 3 cut(s) 129, 178, 356
HpyCH4V TGCA 1 cut(s) 60
HpyF10VI GCNNNNNNNGC 1 cut(s) 139
HpyF3I CTNAG 3 cut(s) 106, 240, 297
Hsp92II CATG 3 cut(s) 60, 380, 419
HspAI GCGC 1 cut(s) 223
Kzo9I GATC 3 cut(s) 62, 143, 267
LweI GCATC 1 cut(s) 119
MaeI CTAG 1 cut(s) 50
MaeIII GTNAC 1 cut(s) 215
MalI GATC 3 cut(s) 64, 145, 269
MboI GATC 3 cut(s) 62, 143, 267
MboII GAAGA 3 cut(s) 57, 190, 193
MflI RGATCY 1 cut(s) 62
MluCI AATT 1 cut(s) 38
MslI CAYNNNNRTG 1 cut(s) 418
MspI CCGG 2 cut(s) 171, 213
MspR9I CCNGG 2 cut(s) 354, 465
Mva1269I GAATGC 1 cut(s) 425
MvaI CCWGG 2 cut(s) 354, 465
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 1 cut(s) 139
NdeII GATC 3 cut(s) 62, 143, 267
NlaIII CATG 3 cut(s) 60, 380, 419
NmeAIII GCCGAG 1 cut(s) 11
NmuCI GTSAC 1 cut(s) 215
PaqCI CACCTGC 1 cut(s) 316
PctI GAATGC 1 cut(s) 425
PinAI ACCGGT 1 cut(s) 212
PpuMI RGGWCCY 1 cut(s) 470
Psp5II RGGWCCY 1 cut(s) 470
Psp6I CCWGG 2 cut(s) 352, 463
PspGI CCWGG 2 cut(s) 352, 463
PspPI GGNCC 3 cut(s) 284, 461, 470
PspPPI RGGWCCY 1 cut(s) 470
PsuI RGATCY 1 cut(s) 62
RsaI GTAC 1 cut(s) 295
RsaNI GTAC 1 cut(s) 294
RseI CAYNNNNRTG 1 cut(s) 418
Sau3AI GATC 3 cut(s) 62, 143, 267
Sau96I GGNCC 3 cut(s) 284, 461, 470
ScrFI CCNGG 2 cut(s) 354, 465
SetI ASST 7 cut(s) 32, 84, 189, 246, 310, 450, 472
SfaNI GCATC 1 cut(s) 119
SfcI CTRYAG 1 cut(s) 312
SinI GGWCC 2 cut(s) 284, 470
SmiMI CAYNNNNRTG 1 cut(s) 418
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 1 cut(s) 38
SsiI CCGC 2 cut(s) 131, 165
SspI AATATT 1 cut(s) 440
SspMI CTAG 1 cut(s) 50
StyD4I CCNGG 2 cut(s) 352, 463
StyI CCWWGG 1 cut(s) 49
TaqI TCGA 2 cut(s) 26, 91
TaqII GACCGA 1 cut(s) 272
TasI AATT 1 cut(s) 38
TseFI GTSAC 1 cut(s) 215
Tsp45I GTSAC 1 cut(s) 215
TspDTI ATGAA 1 cut(s) 432
VpaK11BI GGWCC 2 cut(s) 284, 470
XmaJI CCTAGG 1 cut(s) 49
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.