Rh6CG406500

Cytochrome C oxidase, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0004102
Physical Location & Seq
Reverse (-)
59219652 .. 59221446
1795 bp
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UTR
Exon/CDS
Intron
Rh6CG406500.1

Sequence Viewer

Length: 384 bp
ATGTGGAGGCGAGTGGTGTCTTGTTCGACCTCGGCTCAATTCCAAGCGGTAGGCTCATGCAGATCTTCTCCATCTCTCAACCTCACCCGTCGATTTCTAATCTCCTCAGCATCCACGCCTTCCACTCCCCCGCCGTTTCAGCGATCCCCCAATCTCTCCTCCCCCGCCTCCGGTTTGAAGAAGAAGAAGGTTGAGGATATTATGCCCATTGCTACCGGTCACGAGCGCGAGGAACTTCAGGCTGAGCTTCAGGGGAGGGACATTCTTGAGATCAATCATCCAGTCGGTCCTTTTGGTACTAAGGAAGCACCTGCTATAGTCAAGTCCTACTATGACAGAAGAATAGTTGGCTGCCCTGGTGTTGAAGGAGATGGGGACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0009058 GO:0009060 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016310 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034220 GO:0034641 GO:0034654 GO:0042773 GO:0042775 GO:0042776 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990542
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
COX5B

Protein Analysis

127

Amino Acids

13.8

Weight (kDa)

8.93

Isoelectric Point (pI)

78.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX5B PF01215 69 - 124 1.9e-10 Cytochrome c oxidase subunit Vb
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 319
Acc36I ACCTGC 1 cut(s) 319
AccII CGCG 1 cut(s) 228
AciI CCGC 3 cut(s) 47, 131, 165
AclWI GGATC 1 cut(s) 138
AcuI CTGAAG 2 cut(s) 221, 233
AfaI GTAC 1 cut(s) 298
AfiI CCNNNNNNNGG 1 cut(s) 170
AgeI ACCGGT 1 cut(s) 215
AgsI TTSAA 2 cut(s) 178, 365
AjnI CCWGG 1 cut(s) 355
AluBI AGCT 1 cut(s) 247
AluI AGCT 1 cut(s) 247
AlwI GGATC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 351
AsiGI ACCGGT 1 cut(s) 215
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 76
AvaII GGWCC 1 cut(s) 287
BauI CACGAG 1 cut(s) 221
BbvCI CCTCAGC 1 cut(s) 106
BbvI GCAGC 1 cut(s) 338
BccI CCATC 2 cut(s) 79, 365
BceAI ACGGC 1 cut(s) 118
BciT130I CCWGG 1 cut(s) 357
BfaI CTAG 1 cut(s) 382
BfmI CTRYAG 1 cut(s) 315
BfuAI ACCTGC 1 cut(s) 319
BglII AGATCT 1 cut(s) 62
BisI GCNGC 1 cut(s) 352
BlpI GCTNAGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 353
Bme1390I CCNGG 1 cut(s) 357
Bme18I GGWCC 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 287
BmrFI CCNGG 1 cut(s) 357
BmsI GCATC 1 cut(s) 119
Bpu10I CCTNAGC 1 cut(s) 106
Bpu1102I GCTNAGC 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 287
BsaJI CCNNGG 2 cut(s) 30, 355
BsaWI WCCGGW 2 cut(s) 170, 215
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse118I RCCGGY 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 281
Bse3DI GCAATG 1 cut(s) 207
BseBI CCWGG 1 cut(s) 357
BseDI CCNNGG 2 cut(s) 30, 355
BseGI GGATG 2 cut(s) 110, 277
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMI GCAATG 1 cut(s) 207
BseMII CTCAG 2 cut(s) 120, 234
BseNI ACTGG 1 cut(s) 281
BseRI GAGGAG 2 cut(s) 94, 148
BseXI GCAGC 1 cut(s) 338
Bsh1236I CGCG 1 cut(s) 228
BshTI ACCGGT 1 cut(s) 215
BsiSI CCGG 2 cut(s) 171, 216
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 272
Bsp143I GATC 3 cut(s) 62, 143, 270
Bsp1720I GCTNAGC 1 cut(s) 243
BspACI CCGC 3 cut(s) 47, 131, 165
BspCNI CTCAG 2 cut(s) 119, 235
BspFNI CGCG 1 cut(s) 228
BspMI ACCTGC 1 cut(s) 319
BspPI GGATC 1 cut(s) 138
BsrDI GCAATG 1 cut(s) 207
BsrFI RCCGGY 1 cut(s) 215
BsrI ACTGG 1 cut(s) 281
BssAI RCCGGY 1 cut(s) 215
BssECI CCNNGG 2 cut(s) 30, 355
BssMI GATC 3 cut(s) 62, 143, 270
BssSI CACGAG 1 cut(s) 221
Bst2BI CACGAG 1 cut(s) 221
Bst2UI CCWGG 1 cut(s) 357
BstDEI CTNAG 3 cut(s) 106, 243, 300
BstF5I GGATG 2 cut(s) 110, 277
BstFNI CGCG 1 cut(s) 228
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 3 cut(s) 65, 146, 273
BstMBI GATC 3 cut(s) 62, 143, 270
BstMWI GCNNNNNNNGC 1 cut(s) 139
BstNI CCWGG 1 cut(s) 357
BstSCI CCNGG 1 cut(s) 355
BstSFI CTRYAG 1 cut(s) 315
BstUI CGCG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 338
BstX2I RGATCY 1 cut(s) 62
BstYI RGATCY 1 cut(s) 62
BtsCI GGATG 2 cut(s) 110, 277
BveI ACCTGC 1 cut(s) 319
CfoI GCGC 1 cut(s) 228
Cfr10I RCCGGY 1 cut(s) 215
Cfr13I GGNCC 1 cut(s) 287
Csp6I GTAC 1 cut(s) 297
CspAI ACCGGT 1 cut(s) 215
CviAII CATG 1 cut(s) 57
CviJI RGCY 5 cut(s) 35, 54, 242, 247, 351
CviKI_1 RGCY 5 cut(s) 35, 54, 242, 247, 351
CviQI GTAC 1 cut(s) 297
DdeI CTNAG 3 cut(s) 106, 243, 300
DpnI GATC 3 cut(s) 64, 145, 272
DpnII GATC 3 cut(s) 62, 143, 270
Eco47I GGWCC 1 cut(s) 287
Eco57I CTGAAG 2 cut(s) 221, 233
EcoRII CCWGG 1 cut(s) 355
FaeI CATG 1 cut(s) 60
FaiI YATR 4 cut(s) 58, 203, 317, 333
FaqI GGGAC 1 cut(s) 272
FatI CATG 1 cut(s) 56
FauI CCCGC 2 cut(s) 138, 172
Fnu4HI GCNGC 1 cut(s) 352
FokI GGATG 2 cut(s) 97, 264
Fsp4HI GCNGC 1 cut(s) 352
FspBI CTAG 1 cut(s) 382
GlaI GCGC 1 cut(s) 227
GluI GCNGC 1 cut(s) 352
HapII CCGG 2 cut(s) 171, 216
HhaI GCGC 1 cut(s) 228
Hin1II CATG 1 cut(s) 60
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HpaII CCGG 2 cut(s) 171, 216
HphI GGTGA 1 cut(s) 76
Hpy188III TCNNGA 2 cut(s) 221, 266
Hpy99I CGWCG 1 cut(s) 93
HpyAV CCTTC 3 cut(s) 129, 181, 359
HpyCH4V TGCA 1 cut(s) 60
HpyF10VI GCNNNNNNNGC 1 cut(s) 139
HpyF3I CTNAG 3 cut(s) 106, 243, 300
Hsp92II CATG 1 cut(s) 60
HspAI GCGC 1 cut(s) 226
Kzo9I GATC 3 cut(s) 62, 143, 270
LpnPI CCDG 8 cut(s) 184, 224, 229, 236, 294, 324, 342, 369
Lsp1109I GCAGC 1 cut(s) 338
LweI GCATC 1 cut(s) 119
MaeI CTAG 1 cut(s) 382
MaeIII GTNAC 1 cut(s) 218
MalI GATC 3 cut(s) 64, 145, 272
MboI GATC 3 cut(s) 62, 143, 270
MboII GAAGA 5 cut(s) 57, 190, 193, 196, 351
MflI RGATCY 1 cut(s) 62
MluCI AATT 1 cut(s) 38
MnlI CCTC 8 cut(s) 40, 92, 115, 169, 178, 187, 223, 249
MspI CCGG 2 cut(s) 171, 216
MspR9I CCNGG 1 cut(s) 357
MvaI CCWGG 1 cut(s) 357
MvnI CGCG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 139
NdeII GATC 3 cut(s) 62, 143, 270
NlaIII CATG 1 cut(s) 60
NmeAIII GCCGAG 1 cut(s) 11
NmuCI GTSAC 1 cut(s) 218
PaqCI CACCTGC 1 cut(s) 319
PinAI ACCGGT 1 cut(s) 215
PkrI GCNGC 1 cut(s) 353
Psp6I CCWGG 1 cut(s) 355
PspGI CCWGG 1 cut(s) 355
PspPI GGNCC 1 cut(s) 287
PsuI RGATCY 1 cut(s) 62
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
SatI GCNGC 1 cut(s) 352
Sau3AI GATC 3 cut(s) 62, 143, 270
Sau96I GGNCC 1 cut(s) 287
ScrFI CCNGG 1 cut(s) 357
SetI ASST 5 cut(s) 32, 84, 192, 249, 313
SfaNI GCATC 1 cut(s) 119
SfcI CTRYAG 1 cut(s) 315
SinI GGWCC 1 cut(s) 287
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 1 cut(s) 38
SsiI CCGC 3 cut(s) 47, 131, 165
SspMI CTAG 1 cut(s) 382
StyD4I CCNGG 1 cut(s) 355
TaqI TCGA 2 cut(s) 26, 91
TaqII GACCGA 1 cut(s) 275
TasI AATT 1 cut(s) 38
TseFI GTSAC 1 cut(s) 218
TseI GCWGC 1 cut(s) 351
Tsp45I GTSAC 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 287
XspI CTAG 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.