Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004102

Physical Location & Seq

Genomic Coordinates Forward (+)

39338954 .. 39341487

Gene Structure 2534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G473400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTGGAGGCGAGTGGCATCTTCTTCCTCAGCTCAGCTTCAAGCCCTCGCATCAGCCTCATGCAGATCCTCATCTCTCAATCTCACCCGTCGGTTCCTAATCTCTTCAGCGTCTTCCCCTTCTTCGACGCCGTTGCCGAGCTCCCCGCCTCCCTCCTCCCCCCACACCACCGGCGCTTCCTCTTCTGCTTTGAAGAAGAAGGTTGAGGATGTCATGCCCATTGCAACGGGTCACGAGCGTGAGGAGCTTGCGGCCGAGCTTGAGGGAAGGAACGTTCTTGAAATCAATTATCCAGTTGGTCCTTTTGGTACCAAGGAAGCACCAGCAATAATTAAGTCCTACTATGACAAAAGAATAGTTGGATGCCCTGGTATTGAGGGAGGAGAAGATGAGCATGATGTTGTGTGGTTTTGGCTGGAGAAAGGAAAGCCACATGAATGCCCTGTCTGTACCCAGTATTTTAAGTTGGAAGTGGTTGGCCCAGGAGGTCCTCCAGATGGTCATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0009058 GO:0009060 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016310 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034220 GO:0034641 GO:0034654 GO:0042773 GO:0042775 GO:0042776 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX5B

Protein Analysis

170

Amino Acids

18.15

Weight (kDa)

6.3

Isoelectric Point (pI)

71.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52710 AT1G80230 AT3G15640 AT3G15640
fragaria_vesca	FvH4_2g29600 FvH4_6g30460
malus_domestica	MD08G1145100.v1.1 MD09G1221700.v1.1 MD15G1120800.v1.1 MD17G1203700.v1.1
prunus_persica	Prupe.1G473400_v2.0.a1 Prupe.3G078600_v2.0.a1
pyrus_communis	pycom15g10900 pycom17g20730
rosa_chinensis	RchiOBHm_Chr2g0136811 RchiOBHm_Chr6g0298591
rosa_laevigata	RLG00000011501 RLG00000019579
rosa_multiflora	Rmu_sc0001299.1_g000014 Rmu_sc0001534.1_g000012 Rmu_sc0004500.1_g000013 Rmu_sc0005272.1_g000001
rosa_roxburghii	Rroxscaffold_2G00107970 Rroxscaffold_7G00169510
rosa_rugosa	Rorug02G0334000 Rorug06G0281200
rosa_samantha	Rh2BG391100 Rh6AG392900 Rh6BG400600 Rh6CG406500 Rh6DG393200
rosa_wichuraiana	Rw2G031430 Rw6G034340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	308
AccB1I	GGYRCC	1 cut(s)	308
AciI	CCGC	2 cut(s)	146, 251
AclI	AACGTT	1 cut(s)	273
AclWI	GGATC	1 cut(s)	60
AcoI	YGGCCR	1 cut(s)	252
AcuI	CTGAAG	1 cut(s)	90
AcyI	GRCGYC	1 cut(s)	128
AfaI	GTAC	2 cut(s)	310, 451
AfiI	CCNNNNNNNGG	1 cut(s)	497
AgsI	TTSAA	3 cut(s)	41, 193, 281
AjnI	CCWGG	2 cut(s)	367, 481
AleI	CACNNNNGTG	1 cut(s)	237
AloI	GAACNNNNNNTCC	2 cut(s)	258, 290
AluBI	AGCT	5 cut(s)	32, 37, 141, 247, 259
AluI	AGCT	5 cut(s)	32, 37, 141, 247, 259
Alw21I	GWGCWC	1 cut(s)	143
AlwI	GGATC	1 cut(s)	60
AoxI	GGCC	2 cut(s)	252, 478
Asp718I	GGTACC	1 cut(s)	308
AspLEI	GCGC	1 cut(s)	176
AspS9I	GGNCC	3 cut(s)	299, 479, 488
AsuHPI	GGTGA	1 cut(s)	76
AvaII	GGWCC	2 cut(s)	299, 488
BanI	GGYRCC	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	143
BauI	CACGAG	1 cut(s)	233
BbsI	GAAGAC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	143
BbvCI	CCTCAGC	1 cut(s)	28
BccI	CCATC	1 cut(s)	491
BceAI	ACGGC	1 cut(s)	115
BcgI	CGANNNNNNTGC	2 cut(s)	115, 149
BciT130I	CCWGG	2 cut(s)	369, 483
BfoI	RGCGCY	1 cut(s)	177
BisI	GCNGC	1 cut(s)	252
BlpI	GCTNAGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	253
Bme1390I	CCNGG	2 cut(s)	369, 483
Bme18I	GGWCC	2 cut(s)	299, 488
BmgT120I	GGNCC	3 cut(s)	299, 479, 488
BmiI	GGNNCC	2 cut(s)	95, 310
BmrFI	CCNGG	2 cut(s)	369, 483
BmrI	ACTGGG	1 cut(s)	448
BmsI	GCATC	3 cut(s)	26, 59, 353
BmuI	ACTGGG	1 cut(s)	448
BpiI	GAAGAC	1 cut(s)	105
BpmI	CTGGAG	2 cut(s)	437, 477
Bpu10I	CCTNAGC	1 cut(s)	28
Bpu1102I	GCTNAGC	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	281
BsaBI	GATNNNNATC	2 cut(s)	70, 501
BsaHI	GRCGYC	1 cut(s)	128
BsaJI	CCNNGG	3 cut(s)	312, 367, 481
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	2 cut(s)	293, 454
Bse3DI	GCAATG	1 cut(s)	219
Bse8I	GATNNNNATC	2 cut(s)	70, 501
BseBI	CCWGG	2 cut(s)	369, 483
BseDI	CCNNGG	3 cut(s)	312, 367, 481
BseGI	GGATG	2 cut(s)	214, 368
BseJI	GATNNNNATC	2 cut(s)	70, 501
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMI	GCAATG	1 cut(s)	219
BseMII	CTCAG	2 cut(s)	42, 47
BseNI	ACTGG	2 cut(s)	293, 454
BseRI	GAGGAG	3 cut(s)	145, 257, 396
BseX3I	CGGCCG	1 cut(s)	252
Bsh1285I	CGRYCG	1 cut(s)	255
BshFI	GGCC	2 cut(s)	254, 480
BshNI	GGYRCC	1 cut(s)	308
BsiEI	CGRYCG	1 cut(s)	255
BsiHKAI	GWGCWC	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	171
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmI	GAATGC	1 cut(s)	443
BsnI	GGCC	2 cut(s)	254, 480
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	65
Bsp1720I	GCTNAGC	1 cut(s)	33
BspACI	CCGC	2 cut(s)	146, 251
BspANI	GGCC	2 cut(s)	254, 480
BspCNI	CTCAG	2 cut(s)	41, 46
BspLI	GGNNCC	2 cut(s)	95, 310
BspPI	GGATC	1 cut(s)	60
BspT107I	GGYRCC	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	219
BsrFI	RCCGGY	1 cut(s)	170
BsrI	ACTGG	2 cut(s)	293, 454
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	3 cut(s)	312, 367, 481
BssMI	GATC	1 cut(s)	65
BssNI	GRCGYC	1 cut(s)	128
BssSI	CACGAG	1 cut(s)	233
BssT1I	CCWWGG	1 cut(s)	312
Bst2BI	CACGAG	1 cut(s)	233
Bst2UI	CCWGG	2 cut(s)	369, 483
Bst6I	CTCTTC	2 cut(s)	109, 187
BstACI	GRCGYC	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	2 cut(s)	28, 33
BstF5I	GGATG	2 cut(s)	214, 368
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	1 cut(s)	68
BstMBI	GATC	1 cut(s)	65
BstMCI	CGRYCG	1 cut(s)	255
BstMWI	GCNNNNNNNGC	1 cut(s)	244
BstNI	CCWGG	2 cut(s)	369, 483
BstSCI	CCNGG	2 cut(s)	367, 481
BstV2I	GAAGAC	1 cut(s)	105
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
BstZI	CGGCCG	1 cut(s)	252
BsuRI	GGCC	2 cut(s)	254, 480
BtsCI	GGATG	2 cut(s)	214, 368
Cac8I	GCNNGC	1 cut(s)	249
CfoI	GCGC	1 cut(s)	176
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	3 cut(s)	299, 479, 488
CseI	GACGC	2 cut(s)	99, 136
Csp6I	GTAC	2 cut(s)	309, 450
CviAII	CATG	4 cut(s)	60, 214, 395, 434
CviQI	GTAC	2 cut(s)	309, 450
DdeI	CTNAG	2 cut(s)	28, 33
DpnI	GATC	1 cut(s)	67
DpnII	GATC	1 cut(s)	65
EaeI	YGGCCR	1 cut(s)	252
EagI	CGGCCG	1 cut(s)	252
Eam1104I	CTCTTC	2 cut(s)	109, 187
EarI	CTCTTC	2 cut(s)	109, 187
Ecl136II	GAGCTC	1 cut(s)	141
EclXI	CGGCCG	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	312
Eco24I	GRGCYC	1 cut(s)	143
Eco47I	GGWCC	2 cut(s)	299, 488
Eco52I	CGGCCG	1 cut(s)	252
Eco53kI	GAGCTC	1 cut(s)	141
Eco57I	CTGAAG	1 cut(s)	90
EcoICRI	GAGCTC	1 cut(s)	141
EcoO109I	RGGNCCY	1 cut(s)	488
EcoRII	CCWGG	2 cut(s)	367, 481
EcoT14I	CCWWGG	1 cut(s)	312
EcoT38I	GRGCYC	1 cut(s)	143
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	4 cut(s)	63, 217, 398, 437
FaiI	YATR	5 cut(s)	61, 215, 345, 396, 435
FatI	CATG	4 cut(s)	59, 213, 394, 433
FauI	CCCGC	1 cut(s)	153
Fnu4HI	GCNGC	1 cut(s)	252
FokI	GGATG	2 cut(s)	221, 375
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	1 cut(s)	252
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	1 cut(s)	252
GsuI	CTGGAG	2 cut(s)	437, 477
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	254, 480
HapII	CCGG	1 cut(s)	171
HgaI	GACGC	2 cut(s)	99, 136
HhaI	GCGC	1 cut(s)	176
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	4 cut(s)	63, 217, 398, 437
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	1 cut(s)	76
Hpy188III	TCNNGA	3 cut(s)	233, 278, 494
Hpy99I	CGWCG	2 cut(s)	93, 130
HpyAV	CCTTC	3 cut(s)	129, 193, 261
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	2 cut(s)	63, 224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	244
HpyF3I	CTNAG	2 cut(s)	28, 33
HpySE526I	ACGT	1 cut(s)	273
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	4 cut(s)	63, 217, 398, 437
HspAI	GCGC	1 cut(s)	174
KpnI	GGTACC	1 cut(s)	312
Kzo9I	GATC	1 cut(s)	65
LmnI	GCTCC	2 cut(s)	146, 244
LweI	GCATC	3 cut(s)	26, 59, 353
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	1 cut(s)	67
MboI	GATC	1 cut(s)	65
MboII	GAAGA	9 cut(s)	12, 15, 96, 105, 114, 174, 205, 208, 398
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	2 cut(s)	286, 330
MmeI	TCCRAC	2 cut(s)	340, 447
MseI	TTAA	2 cut(s)	333, 462
MslI	CAYNNNNRTG	2 cut(s)	237, 436
MspI	CCGG	1 cut(s)	171
MspR9I	CCNGG	2 cut(s)	369, 483
Mva1269I	GAATGC	1 cut(s)	443
MvaI	CCWGG	2 cut(s)	369, 483
MwoI	GCNNNNNNNGC	1 cut(s)	244
NdeII	GATC	1 cut(s)	65
NlaIII	CATG	4 cut(s)	63, 217, 398, 437
NlaIV	GGNNCC	2 cut(s)	95, 310
NmeAIII	GCCGAG	2 cut(s)	162, 280
NmuCI	GTSAC	1 cut(s)	230
OliI	CACNNNNGTG	1 cut(s)	237
PcsI	WCGNNNNNNNCGW	1 cut(s)	134
PctI	GAATGC	1 cut(s)	443
PkrI	GCNGC	1 cut(s)	253
PpuMI	RGGWCCY	1 cut(s)	488
Psp124BI	GAGCTC	1 cut(s)	143
Psp1406I	AACGTT	1 cut(s)	273
Psp5II	RGGWCCY	1 cut(s)	488
Psp6I	CCWGG	2 cut(s)	367, 481
PspGI	CCWGG	2 cut(s)	367, 481
PspN4I	GGNNCC	2 cut(s)	95, 310
PspPI	GGNCC	3 cut(s)	299, 479, 488
PspPPI	RGGWCCY	1 cut(s)	488
PsuI	RGATCY	1 cut(s)	65
RsaI	GTAC	2 cut(s)	310, 451
RsaNI	GTAC	2 cut(s)	309, 450
RseI	CAYNNNNRTG	2 cut(s)	237, 436
SacI	GAGCTC	1 cut(s)	143
SaqAI	TTAA	2 cut(s)	333, 462
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	1 cut(s)	65
Sau96I	GGNCC	3 cut(s)	299, 479, 488
ScrFI	CCNGG	2 cut(s)	369, 483
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	8 cut(s)	34, 39, 143, 204, 249, 261, 276, 490
SfaNI	GCATC	3 cut(s)	26, 59, 353
SgrAI	CRCCGGYG	1 cut(s)	170
SinI	GGWCC	2 cut(s)	299, 488
SmiMI	CAYNNNNRTG	2 cut(s)	237, 436
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	2 cut(s)	286, 330
SsiI	CCGC	2 cut(s)	146, 251
SstI	GAGCTC	1 cut(s)	143
StyD4I	CCNGG	2 cut(s)	367, 481
StyI	CCWWGG	1 cut(s)	312
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	1 cut(s)	125
TasI	AATT	2 cut(s)	286, 330
TauI	GCSGC	1 cut(s)	254
Tru1I	TTAA	2 cut(s)	333, 462
Tru9I	TTAA	2 cut(s)	333, 462
TseFI	GTSAC	1 cut(s)	230
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	1 cut(s)	450
VpaK11BI	GGWCC	2 cut(s)	299, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.