MD17G1203700.v1.1

Cytochrome C oxidase, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0004102
Physical Location & Seq
Forward (+)
24642972 .. 24646995
4024 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1203700.v1.1.491

Sequence Viewer

Length: 486 bp
ATGTGGCGGAGACTGCTCTCTTCCTCTCAGCTCAAAACCCTAACCCTAGCCGCCGCCGCTCCATGCCGATCGGCTGGTGGACCCGCCCTGTCTCTCCTCCTCAAGCCCCTTCCTGTCCTTCCTAGCTACTTCAGCACCACTGCCGAAGCTGTGACGACGGGTGTGAAGAAGGTTGAGGACGTTATGCCCATTGCCACTGGCCACGAGCGAGAGGAGCTTGAAGCTGAACTTGAGGGAAGGGATGTTCTCGAAATCAACTATCCTGTTGGTCCTTTTGGCACAAAGGAAGAACCTGCGGTTGTCAAGTCCTATTACGACAAGAGAATAGTTGGATGCCCTGGTGGTGAAGGCGAGGATGAGCATGATGTTGTGTGGTTTTGGCTGGAGAAAGGCAAGCCGCATGAATGTCCAGTGTGCTCACAATACTTTGTGCTTGAAGTTGTTGGACCCGGTGGATCTCCAGACCATTCCGATGACCATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0009058 GO:0009060 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016310 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034220 GO:0034641 GO:0034654 GO:0042773 GO:0042775 GO:0042776 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990542
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
COX5B

Protein Analysis

162

Amino Acids

17.56

Weight (kDa)

5.0

Isoelectric Point (pI)

49.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX5B PF01215 65 - 153 2.6e-19 Cytochrome c oxidase subunit Vb
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 301
AccBSI CCGCTC 1 cut(s) 59
AciI CCGC 7 cut(s) 7, 51, 54, 57, 84, 296, 398
AclWI GGATC 1 cut(s) 463
AcoI YGGCCR 1 cut(s) 199
AcuI CTGAAG 1 cut(s) 115
AgsI TTSAA 2 cut(s) 221, 437
AjnI CCWGG 1 cut(s) 337
AloI GAACNNNNNNTCC 2 cut(s) 228, 260
AluBI AGCT 5 cut(s) 31, 126, 149, 217, 224
AluI AGCT 5 cut(s) 31, 126, 149, 217, 224
Alw21I GWGCWC 1 cut(s) 419
Alw26I GTCTC 2 cut(s) 4, 96
AlwI GGATC 1 cut(s) 463
AoxI GGCC 1 cut(s) 199
AspS9I GGNCC 3 cut(s) 80, 269, 446
AsuC2I CCSGG 1 cut(s) 450
AsuHPI GGTGA 1 cut(s) 356
AvaII GGWCC 3 cut(s) 80, 269, 446
BalI TGGCCA 1 cut(s) 201
BauI CACGAG 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 419
BciT130I CCWGG 1 cut(s) 339
BcnI CCSGG 1 cut(s) 450
BcoDI GTCTC 2 cut(s) 4, 96
BfaI CTAG 2 cut(s) 47, 123
BfuAI ACCTGC 1 cut(s) 301
BisI GCNGC 4 cut(s) 51, 54, 57, 398
BlsI GCNGC 4 cut(s) 52, 55, 58, 399
Bme1390I CCNGG 2 cut(s) 339, 450
Bme18I GGWCC 3 cut(s) 80, 269, 446
BmgT120I GGNCC 3 cut(s) 80, 269, 446
BmiI GGNNCC 2 cut(s) 82, 448
BmrFI CCNGG 2 cut(s) 339, 450
BmsI GCATC 1 cut(s) 323
BpmI CTGGAG 2 cut(s) 404, 444
BpuEI CTTGAG 2 cut(s) 86, 251
BpuMI CCSGG 1 cut(s) 450
BsaBI GATNNNNATC 1 cut(s) 477
BsaJI CCNNGG 1 cut(s) 337
Bse1I ACTGG 2 cut(s) 202, 410
Bse3DI GCAATG 1 cut(s) 189
Bse8I GATNNNNATC 1 cut(s) 477
BseBI CCWGG 1 cut(s) 339
BseDI CCNNGG 1 cut(s) 337
BseGI GGATG 3 cut(s) 247, 338, 361
BseJI GATNNNNATC 1 cut(s) 477
BseMI GCAATG 1 cut(s) 189
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 2 cut(s) 202, 410
BseRI GAGGAG 3 cut(s) 86, 89, 227
Bsh1285I CGRYCG 1 cut(s) 71
BshFI GGCC 1 cut(s) 201
BsiEI CGRYCG 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 419
BsiSI CCGG 1 cut(s) 450
BsmAI GTCTC 2 cut(s) 4, 96
BsnI GGCC 1 cut(s) 201
Bsp1286I GDGCHC 1 cut(s) 419
Bsp143I GATC 2 cut(s) 68, 455
BspACI CCGC 7 cut(s) 7, 51, 54, 57, 84, 296, 398
BspANI GGCC 1 cut(s) 201
BspCNI CTCAG 1 cut(s) 40
BspLI GGNNCC 2 cut(s) 82, 448
BspMI ACCTGC 1 cut(s) 301
BspPI GGATC 1 cut(s) 463
BsrBI CCGCTC 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 189
BsrI ACTGG 2 cut(s) 202, 410
BssECI CCNNGG 1 cut(s) 337
BssMI GATC 2 cut(s) 68, 455
BssSI CACGAG 1 cut(s) 203
Bst2BI CACGAG 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 339
Bst6I CTCTTC 1 cut(s) 25
BstC8I GCNNGC 1 cut(s) 395
BstDEI CTNAG 1 cut(s) 27
BstF5I GGATG 3 cut(s) 247, 338, 361
BstKTI GATC 2 cut(s) 71, 458
BstMAI GTCTC 2 cut(s) 4, 96
BstMBI GATC 2 cut(s) 68, 455
BstMCI CGRYCG 1 cut(s) 71
BstMWI GCNNNNNNNGC 4 cut(s) 13, 56, 132, 214
BstNI CCWGG 1 cut(s) 339
BstSCI CCNGG 2 cut(s) 337, 448
BstX2I RGATCY 1 cut(s) 455
BstYI RGATCY 1 cut(s) 455
BsuRI GGCC 1 cut(s) 201
BtsCI GGATG 3 cut(s) 247, 338, 361
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 4 cut(s) 138, 195, 417, 481
BveI ACCTGC 1 cut(s) 301
Cac8I GCNNGC 1 cut(s) 395
Cfr13I GGNCC 3 cut(s) 80, 269, 446
CviAII CATG 3 cut(s) 63, 362, 401
DdeI CTNAG 1 cut(s) 27
DpnI GATC 2 cut(s) 70, 457
DpnII GATC 2 cut(s) 68, 455
EaeI YGGCCR 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
EciI GGCGGA 1 cut(s) 22
Eco47I GGWCC 3 cut(s) 80, 269, 446
Eco57I CTGAAG 1 cut(s) 115
EcoRII CCWGG 1 cut(s) 337
FaeI CATG 3 cut(s) 66, 365, 404
FaiI YATR 4 cut(s) 64, 185, 363, 402
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FatI CATG 3 cut(s) 62, 361, 400
FauI CCCGC 1 cut(s) 91
Fnu4HI GCNGC 4 cut(s) 51, 54, 57, 398
FokI GGATG 3 cut(s) 254, 345, 368
Fsp4HI GCNGC 4 cut(s) 51, 54, 57, 398
FspBI CTAG 2 cut(s) 47, 123
GluI GCNGC 4 cut(s) 51, 54, 57, 398
GsuI CTGGAG 2 cut(s) 404, 444
HaeIII GGCC 1 cut(s) 201
HapII CCGG 1 cut(s) 450
Hin1II CATG 3 cut(s) 66, 365, 404
HpaII CCGG 1 cut(s) 450
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 1 cut(s) 80
Hpy188I TCNGA 1 cut(s) 472
Hpy188III TCNNGA 2 cut(s) 248, 461
Hpy8I GTNNAC 1 cut(s) 80
Hpy99I CGWCG 1 cut(s) 160
HpyAV CCTTC 5 cut(s) 119, 128, 163, 231, 341
HpyCH4IV ACGT 1 cut(s) 180
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 56, 132, 214
HpyF3I CTNAG 1 cut(s) 27
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 3 cut(s) 66, 365, 404
Kzo9I GATC 2 cut(s) 68, 455
LmnI GCTCC 2 cut(s) 64, 214
LweI GCATC 1 cut(s) 323
MaeI CTAG 2 cut(s) 47, 123
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 151
MalI GATC 2 cut(s) 70, 457
MbiI CCGCTC 1 cut(s) 59
MboI GATC 2 cut(s) 68, 455
MboII GAAGA 3 cut(s) 12, 178, 299
MflI RGATCY 1 cut(s) 455
MhlI GDGCHC 1 cut(s) 419
MlsI TGGCCA 1 cut(s) 201
MluNI TGGCCA 1 cut(s) 201
MmeI TCCRAC 2 cut(s) 310, 424
MnlI CCTC 7 cut(s) 34, 107, 110, 169, 205, 226, 346
Mox20I TGGCCA 1 cut(s) 201
MscI TGGCCA 1 cut(s) 201
MslI CAYNNNNRTG 1 cut(s) 471
Msp20I TGGCCA 1 cut(s) 201
MspI CCGG 1 cut(s) 450
MspR9I CCNGG 2 cut(s) 339, 450
MvaI CCWGG 1 cut(s) 339
MwoI GCNNNNNNNGC 4 cut(s) 13, 56, 132, 214
NciI CCSGG 1 cut(s) 450
NdeII GATC 2 cut(s) 68, 455
NlaIII CATG 3 cut(s) 66, 365, 404
NlaIV GGNNCC 2 cut(s) 82, 448
NmuCI GTSAC 1 cut(s) 151
PkrI GCNGC 4 cut(s) 52, 55, 58, 399
Ple19I CGATCG 1 cut(s) 71
Psp6I CCWGG 1 cut(s) 337
PspGI CCWGG 1 cut(s) 337
PspN4I GGNNCC 2 cut(s) 82, 448
PspPI GGNCC 3 cut(s) 80, 269, 446
PsuI RGATCY 1 cut(s) 455
PvuI CGATCG 1 cut(s) 71
RseI CAYNNNNRTG 1 cut(s) 471
SatI GCNGC 4 cut(s) 51, 54, 57, 398
Sau3AI GATC 2 cut(s) 68, 455
Sau96I GGNCC 3 cut(s) 80, 269, 446
ScrFI CCNGG 2 cut(s) 339, 450
SduI GDGCHC 1 cut(s) 419
SetI ASST 8 cut(s) 33, 128, 151, 174, 183, 219, 226, 295
SfaNI GCATC 1 cut(s) 323
SinI GGWCC 3 cut(s) 80, 269, 446
SmiMI CAYNNNNRTG 1 cut(s) 471
SmlI CTYRAG 2 cut(s) 101, 230
SmoI CTYRAG 2 cut(s) 101, 230
SsiI CCGC 7 cut(s) 7, 51, 54, 57, 84, 296, 398
SspMI CTAG 2 cut(s) 47, 123
StyD4I CCNGG 2 cut(s) 337, 448
TaiI ACGT 1 cut(s) 183
TaqI TCGA 1 cut(s) 249
TauI GCSGC 4 cut(s) 53, 56, 59, 400
TscAI CASTG 3 cut(s) 145, 202, 417
TseFI GTSAC 1 cut(s) 151
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 1 cut(s) 417
TspRI CASTG 3 cut(s) 145, 202, 417
VpaK11BI GGWCC 3 cut(s) 80, 269, 446
XspI CTAG 2 cut(s) 47, 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.