Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002364

Physical Location & Seq

Genomic Coordinates Forward (+)

25340353 .. 25342082

Gene Structure 1730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G67620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTTGACGACTCTTCGATCTCGTTGTTCGTCTCTTCTTCTAAATCAATCATGGAAGCTAGCTCCCAATCGCATCTTCGCTTCCTCTCCCTCTTTTTCTTCATCCGCCGGGATCTCTAATGTCTCAGAGATTCTCACACTTCCCGAAGTGGAGAAGATTCTCGCCGACGTGAAAGCTGATAACGTGACTGTGATTCCTACACATAATCATTGTTTCTGGGCTGATTTCACTGTCATCGCCACCGGTAGATCCGATTGGCACTTAAGAAACATCGCTCAAGCTTTAGTTTATAGGGCCAAGCAAAAGCAGAAAGGAGCTAAACATGTAATGTTACCTTCTGTGCAAGGGTACAATAGCAAGTGGATTGTCATAGACTACGGAAAGTTTGTAGTCCATGCACTTGATGAGAAAGCCAGAGGTTATTTCAATTTGGAAAGCCTTTGGTCTGCTGAATCCTCTGGTACTGATACTTCAGATCAGGATCTCCAAAACGTTTTTGTAAAGGTCCGACCAAAGAACAATTCGAAAAGGAAACCGGCTAAAGTGAGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

184

Amino Acids

20.55

Weight (kDa)

9.69

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsfS	PF02410	50 - 148	1.1e-22	Ribosomal silencing factor during starvation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67620
fragaria_vesca	FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330
malus_domestica	MD13G1112100.v1.1 MD16G1111700.v1.1
prunus_persica	Prupe.1G233300_v2.0.a1
pyrus_communis	pycom13g09750 pycom16g09470
rosa_chinensis	RchiOBHm_Chr1g0343341 RchiOBHm_Chr1g0366581 RchiOBHm_Chr3g0456071 RchiOBHm_Chr4g0431131 RchiOBHm_Chr7g0183971 RchiOBHm_Chr7g0198741
rosa_laevigata	RLG00000006921
rosa_multiflora	Rmu_sc0005258.1_g000002 Rmu_sc0014629.1_g000007 Rmu_sc0023228.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015160 Rroxscaffold_5G00372730 Rroxscaffold_7G00210320
rosa_rugosa	Rorug04G0248600
rosa_samantha	Rh1CG146700 Rh1CG169800 Rh3AG217500 Rh3DG326500 Rh4AG304900 Rh4BG312100 Rh4CG328400 Rh4DG308700 Rh5AG537300 Rh6BG131200 Rh6DG116800
rosa_wichuraiana	Rw1G009740 Rw4G026500 Rw5G039480 Rw6G009530 Rw6G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	105
AclI	AACGTT	1 cut(s)	492
AclWI	GGATC	3 cut(s)	119, 243, 489
AcuI	CTGAAG	1 cut(s)	456
AfaI	GTAC	2 cut(s)	350, 463
AflII	CTTAAG	1 cut(s)	262
AflIII	ACRYGT	1 cut(s)	322
AgeI	ACCGGT	1 cut(s)	242
AgsI	TTSAA	1 cut(s)	427
AjiI	CACGTC	1 cut(s)	169
AjuI	GAANNNNNNNTTGG	4 cut(s)	59, 91, 505, 537
AluBI	AGCT	5 cut(s)	58, 62, 176, 281, 317
AluI	AGCT	5 cut(s)	58, 62, 176, 281, 317
Alw26I	GTCTC	2 cut(s)	36, 127
AlwI	GGATC	3 cut(s)	119, 243, 489
AoxI	GGCC	1 cut(s)	294
AsiGI	ACCGGT	1 cut(s)	242
AspS9I	GGNCC	2 cut(s)	294, 505
AsuC2I	CCSGG	1 cut(s)	109
AsuII	TTCGAA	1 cut(s)	524
AsuNHI	GCTAGC	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	505
BarI	GAAGNNNNNNTAC	2 cut(s)	454, 486
BcnI	CCSGG	1 cut(s)	109
BcoDI	GTCTC	2 cut(s)	36, 127
BfaI	CTAG	1 cut(s)	59
BfrI	CTTAAG	1 cut(s)	262
Bme1390I	CCNGG	1 cut(s)	109
Bme18I	GGWCC	1 cut(s)	505
BmgBI	CACGTC	1 cut(s)	169
BmgT120I	GGNCC	2 cut(s)	294, 505
BmrFI	CCNGG	1 cut(s)	109
BmsI	GCATC	1 cut(s)	81
BmtI	GCTAGC	1 cut(s)	62
Bpu14I	TTCGAA	1 cut(s)	524
BpuEI	CTTGAG	1 cut(s)	261
BpuMI	CCSGG	1 cut(s)	109
BsaBI	GATNNNNATC	1 cut(s)	480
BsaWI	WCCGGW	1 cut(s)	242
Bse118I	RCCGGY	2 cut(s)	242, 535
Bse8I	GATNNNNATC	1 cut(s)	480
BseGI	GGATG	1 cut(s)	101
BseJI	GATNNNNATC	1 cut(s)	480
BseMII	CTCAG	1 cut(s)	138
BshFI	GGCC	1 cut(s)	296
BshTI	ACCGGT	1 cut(s)	242
BsiSI	CCGG	3 cut(s)	108, 243, 536
BsmAI	GTCTC	2 cut(s)	36, 127
BsmBI	CGTCTC	1 cut(s)	36
BsnI	GGCC	1 cut(s)	296
Bsp119I	TTCGAA	1 cut(s)	524
Bsp143I	GATC	5 cut(s)	17, 111, 248, 475, 481
BspACI	CCGC	1 cut(s)	105
BspANI	GGCC	1 cut(s)	296
BspCNI	CTCAG	1 cut(s)	137
BspOI	GCTAGC	1 cut(s)	62
BspPI	GGATC	3 cut(s)	119, 243, 489
BspT104I	TTCGAA	1 cut(s)	524
BspTI	CTTAAG	1 cut(s)	262
BsrFI	RCCGGY	2 cut(s)	242, 535
BssAI	RCCGGY	2 cut(s)	242, 535
BssMI	GATC	5 cut(s)	17, 111, 248, 475, 481
Bst4CI	ACNGT	2 cut(s)	190, 232
Bst6I	CTCTTC	2 cut(s)	18, 39
BstAFI	CTTAAG	1 cut(s)	262
BstBI	TTCGAA	1 cut(s)	524
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	124
BstF5I	GGATG	1 cut(s)	101
BstKTI	GATC	5 cut(s)	20, 114, 251, 478, 484
BstMAI	GTCTC	2 cut(s)	36, 127
BstMBI	GATC	5 cut(s)	17, 111, 248, 475, 481
BstNSI	RCATGY	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	107
BstX2I	RGATCY	3 cut(s)	111, 248, 481
BstYI	RGATCY	3 cut(s)	111, 248, 481
BsuRI	GGCC	1 cut(s)	296
BtgZI	GCGATG	2 cut(s)	220, 256
BtrI	CACGTC	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	101
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	60
Cfr10I	RCCGGY	2 cut(s)	242, 535
Cfr13I	GGNCC	2 cut(s)	294, 505
Csp6I	GTAC	2 cut(s)	349, 462
CspAI	ACCGGT	1 cut(s)	242
CviAII	CATG	3 cut(s)	51, 323, 395
CviQI	GTAC	2 cut(s)	349, 462
DdeI	CTNAG	1 cut(s)	124
DpnI	GATC	5 cut(s)	19, 113, 250, 477, 483
DpnII	GATC	5 cut(s)	17, 111, 248, 475, 481
Eam1104I	CTCTTC	2 cut(s)	18, 39
EarI	CTCTTC	2 cut(s)	18, 39
EciI	GGCGGA	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	505
Eco57I	CTGAAG	1 cut(s)	456
Esp3I	CGTCTC	1 cut(s)	36
FaeI	CATG	3 cut(s)	54, 326, 398
FaiI	YATR	6 cut(s)	52, 204, 291, 324, 371, 396
FatI	CATG	3 cut(s)	50, 322, 394
FokI	GGATG	1 cut(s)	88
FspBI	CTAG	1 cut(s)	59
HaeIII	GGCC	1 cut(s)	296
HapII	CCGG	3 cut(s)	108, 243, 536
Hin1II	CATG	3 cut(s)	54, 326, 398
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	279
HinfI	GANTC	5 cut(s)	10, 130, 157, 193, 452
HpaII	CCGG	3 cut(s)	108, 243, 536
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	4 cut(s)	127, 253, 475, 509
Hpy188III	TCNNGA	3 cut(s)	143, 479, 552
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	1 cut(s)	345
HpyCH4III	ACNGT	2 cut(s)	190, 232
HpyCH4IV	ACGT	3 cut(s)	168, 183, 492
HpyCH4V	TGCA	2 cut(s)	343, 398
HpyF3I	CTNAG	1 cut(s)	124
HpySE526I	ACGT	3 cut(s)	168, 183, 492
Hsp92II	CATG	3 cut(s)	54, 326, 398
Kzo9I	GATC	5 cut(s)	17, 111, 248, 475, 481
LmnI	GCTCC	2 cut(s)	67, 314
LpnPI	CCDG	7 cut(s)	121, 202, 256, 427, 444, 464, 549
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	3 cut(s)	168, 183, 492
MaeIII	GTNAC	2 cut(s)	184, 330
MalI	GATC	5 cut(s)	19, 113, 250, 477, 483
MboI	GATC	5 cut(s)	17, 111, 248, 475, 481
MboII	GAAGA	6 cut(s)	5, 26, 29, 67, 90, 166
MflI	RGATCY	3 cut(s)	111, 248, 481
MluCI	AATT	2 cut(s)	427, 520
MlyI	GAGTC	1 cut(s)	4
MmeI	TCCRAC	1 cut(s)	532
MnlI	CCTC	4 cut(s)	94, 100, 410, 466
MseI	TTAA	1 cut(s)	263
MspCI	CTTAAG	1 cut(s)	262
MspI	CCGG	3 cut(s)	108, 243, 536
MspR9I	CCNGG	1 cut(s)	109
NciI	CCSGG	1 cut(s)	109
NdeII	GATC	5 cut(s)	17, 111, 248, 475, 481
NheI	GCTAGC	1 cut(s)	58
NlaIII	CATG	3 cut(s)	54, 326, 398
NmuCI	GTSAC	1 cut(s)	184
NspI	RCATGY	1 cut(s)	326
NspV	TTCGAA	1 cut(s)	524
PciI	ACATGT	1 cut(s)	322
PfeI	GAWTC	4 cut(s)	130, 157, 193, 452
PinAI	ACCGGT	1 cut(s)	242
PleI	GAGTC	1 cut(s)	4
PpsI	GAGTC	1 cut(s)	4
PscI	ACATGT	1 cut(s)	322
Psp1406I	AACGTT	1 cut(s)	492
PspPI	GGNCC	2 cut(s)	294, 505
PsuI	RGATCY	3 cut(s)	111, 248, 481
RsaI	GTAC	2 cut(s)	350, 463
RsaNI	GTAC	2 cut(s)	349, 462
SaqAI	TTAA	1 cut(s)	263
Sau3AI	GATC	5 cut(s)	17, 111, 248, 475, 481
Sau96I	GGNCC	2 cut(s)	294, 505
SchI	GAGTC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	109
SfaNI	GCATC	1 cut(s)	81
SfuI	TTCGAA	1 cut(s)	524
SinI	GGWCC	1 cut(s)	505
SmlI	CTYRAG	2 cut(s)	262, 276
SmoI	CTYRAG	2 cut(s)	262, 276
Sse9I	AATT	2 cut(s)	427, 520
SsiI	CCGC	1 cut(s)	105
SspMI	CTAG	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	107
TaaI	ACNGT	2 cut(s)	190, 232
TaiI	ACGT	3 cut(s)	171, 186, 495
TaqI	TCGA	2 cut(s)	16, 524
TasI	AATT	2 cut(s)	427, 520
TfiI	GAWTC	4 cut(s)	130, 157, 193, 452
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	1 cut(s)	184
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	1 cut(s)	90
TspGWI	ACGGA	1 cut(s)	393
TspRI	CASTG	1 cut(s)	235
Vha464I	CTTAAG	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	505
XceI	RCATGY	1 cut(s)	326
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.