Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002364

Physical Location & Seq

Genomic Coordinates Forward (+)

22134578 .. 22135530

Gene Structure 953 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G012160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGTCCTCGCCACCGGAAGGTCCACCTGGCACGTCAAGAACATCGCCCAAGCCCTAATTTACAAGTCTAAGCAAAAGCAGAAAGGAGCTCAGCGCGTGGTGCTTCCCACTGTTGAAGGGCAAGAGGGAGGCAAGTGGATTGTCATTGACTCTGGGAAAGTGATAGTTCATGCTCTTGATGAGAATGCTAAAGCTTACTACAATCTGGAGACTCTTTGGACAATAAAGCCGTCTGAGAAAGAACCAATTCAGGTATGTTCATTCATCATGTTTTGGGAGATCAGATCACCCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

98

Amino Acids

11.14

Weight (kDa)

9.34

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsfS	PF02410	1 - 73	3e-17	Ribosomal silencing factor during starvation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67620
fragaria_vesca	FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330
malus_domestica	MD13G1112100.v1.1 MD16G1111700.v1.1
prunus_persica	Prupe.1G233300_v2.0.a1
pyrus_communis	pycom13g09750 pycom16g09470
rosa_chinensis	RchiOBHm_Chr1g0343341 RchiOBHm_Chr1g0366581 RchiOBHm_Chr3g0456071 RchiOBHm_Chr4g0431131 RchiOBHm_Chr7g0183971 RchiOBHm_Chr7g0198741
rosa_laevigata	RLG00000006921
rosa_multiflora	Rmu_sc0005258.1_g000002 Rmu_sc0014629.1_g000007 Rmu_sc0023228.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015160 Rroxscaffold_5G00372730 Rroxscaffold_7G00210320
rosa_rugosa	Rorug04G0248600
rosa_samantha	Rh1CG146700 Rh1CG169800 Rh3AG217500 Rh3DG326500 Rh4AG304900 Rh4BG312100 Rh4CG328400 Rh4DG308700 Rh5AG537300 Rh6BG131200 Rh6DG116800
rosa_wichuraiana	Rw1G009740 Rw4G026500 Rw5G039480 Rw6G009530 Rw6G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	96
AfiI	CCNNNNNNNGG	1 cut(s)	18
AgsI	TTSAA	1 cut(s)	116
AjiI	CACGTC	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	26
AluBI	AGCT	2 cut(s)	89, 194
AluI	AGCT	2 cut(s)	89, 194
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	1 cut(s)	203
Asp700I	GAANNNNTTC	1 cut(s)	246
AspLEI	GCGC	1 cut(s)	96
AspS9I	GGNCC	2 cut(s)	4, 21
AsuHPI	GGTGA	1 cut(s)	279
AvaII	GGWCC	2 cut(s)	4, 21
BanII	GRGCYC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	91
BceAI	ACGGC	1 cut(s)	214
BciT130I	CCWGG	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	203
BlpI	GCTNAGC	1 cut(s)	90
Bme1390I	CCNGG	1 cut(s)	28
Bme18I	GGWCC	2 cut(s)	4, 21
BmgBI	CACGTC	1 cut(s)	34
BmgT120I	GGNCC	2 cut(s)	4, 21
BmrFI	CCNGG	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	227
Bpu1102I	GCTNAGC	1 cut(s)	90
BsaWI	WCCGGW	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	18
BseMII	CTCAG	2 cut(s)	104, 225
Bsh1236I	CGCG	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	15
BslI	CCNNNNNNNGG	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	203
BsmI	GAATGC	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	2 cut(s)	279, 284
Bsp1720I	GCTNAGC	1 cut(s)	90
BspCNI	CTCAG	2 cut(s)	103, 226
BspFNI	CGCG	1 cut(s)	96
BssMI	GATC	2 cut(s)	279, 284
Bst2UI	CCWGG	1 cut(s)	28
Bst4CI	ACNGT	1 cut(s)	112
BstDEI	CTNAG	3 cut(s)	69, 90, 234
BstFNI	CGCG	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	2 cut(s)	282, 287
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	2 cut(s)	279, 284
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstNI	CCWGG	1 cut(s)	28
BstSCI	CCNGG	1 cut(s)	26
BstUI	CGCG	1 cut(s)	96
BtgZI	GCGATG	1 cut(s)	28
BtrI	CACGTC	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	108
CfoI	GCGC	1 cut(s)	96
Cfr13I	GGNCC	2 cut(s)	4, 21
CviAII	CATG	2 cut(s)	170, 268
CviJI	RGCY	4 cut(s)	53, 89, 194, 229
CviKI_1	RGCY	4 cut(s)	53, 89, 194, 229
DdeI	CTNAG	3 cut(s)	69, 90, 234
DpnI	GATC	2 cut(s)	281, 286
DpnII	GATC	2 cut(s)	279, 284
Ecl136II	GAGCTC	1 cut(s)	89
Eco24I	GRGCYC	1 cut(s)	91
Eco47I	GGWCC	2 cut(s)	4, 21
Eco53kI	GAGCTC	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	26
EcoT38I	GRGCYC	1 cut(s)	91
FaeI	CATG	2 cut(s)	173, 271
FaiI	YATR	3 cut(s)	171, 256, 269
FatI	CATG	2 cut(s)	169, 267
FriOI	GRGCYC	1 cut(s)	91
GlaI	GCGC	1 cut(s)	95
GsuI	CTGGAG	1 cut(s)	227
HapII	CCGG	1 cut(s)	15
HhaI	GCGC	1 cut(s)	96
Hin1II	CATG	2 cut(s)	173, 271
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HindIII	AAGCTT	1 cut(s)	192
HinfI	GANTC	2 cut(s)	149, 211
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	1 cut(s)	279
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	2 cut(s)	235, 284
Hpy188III	TCNNGA	3 cut(s)	37, 176, 206
Hpy8I	GTNNAC	1 cut(s)	24
HpyAV	CCTTC	2 cut(s)	12, 110
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpyF3I	CTNAG	3 cut(s)	69, 90, 234
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	173, 271
HspAI	GCGC	1 cut(s)	94
Kzo9I	GATC	2 cut(s)	279, 284
LmnI	GCTCC	1 cut(s)	86
LpnPI	CCDG	6 cut(s)	13, 28, 40, 138, 191, 236
MaeII	ACGT	1 cut(s)	33
MalI	GATC	2 cut(s)	281, 286
MboI	GATC	2 cut(s)	279, 284
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	3 cut(s)	57, 246, 292
MlyI	GAGTC	2 cut(s)	143, 205
MnlI	CCTC	3 cut(s)	17, 118, 122
MroXI	GAANNNNTTC	1 cut(s)	246
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	28
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	28
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	100
NdeII	GATC	2 cut(s)	279, 284
NlaIII	CATG	2 cut(s)	173, 271
PctI	GAATGC	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	246
PleI	GAGTC	2 cut(s)	143, 205
PpsI	GAGTC	2 cut(s)	143, 205
Psp124BI	GAGCTC	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	26
PspPI	GGNCC	2 cut(s)	4, 21
SacI	GAGCTC	1 cut(s)	91
Sau3AI	GATC	2 cut(s)	279, 284
Sau96I	GGNCC	2 cut(s)	4, 21
SchI	GAGTC	2 cut(s)	143, 205
ScrFI	CCNGG	1 cut(s)	28
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	6 cut(s)	23, 29, 36, 91, 196, 255
SinI	GGWCC	2 cut(s)	4, 21
Sse9I	AATT	3 cut(s)	57, 246, 292
SstI	GAGCTC	1 cut(s)	91
StyD4I	CCNGG	1 cut(s)	26
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	1 cut(s)	36
TasI	AATT	3 cut(s)	57, 246, 292
TscAI	CASTG	1 cut(s)	115
TspDTI	ATGAA	3 cut(s)	158, 249, 253
TspRI	CASTG	1 cut(s)	115
VpaK11BI	GGWCC	2 cut(s)	4, 21
XmnI	GAANNNNTTC	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.