Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002364

Physical Location & Seq

Genomic Coordinates Reverse (-)

35362610 .. 35363395

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56987

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGTCCTCGCCATCGGAAGGTCCACCTGGCACGTCAAGAACATCGCCCAAGCCCTAATTTACAAGGCAGCTCAGCGCGTGGTGCTTCCCACTGTTGAAGGGAAAGAGGGAGGCAAGTGGATTGTCATTGACTCTGGGAAAGTGATAGTTCATGCTCTTGATGAGAATGCTAAAGCTTACTACAATCTGGAGACTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

66

Amino Acids

7.29

Weight (kDa)

9.1

Isoelectric Point (pI)

25.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsfS	PF02410	1 - 66	5.6e-15	Ribosomal silencing factor during starvation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67620
fragaria_vesca	FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330
malus_domestica	MD13G1112100.v1.1 MD16G1111700.v1.1
prunus_persica	Prupe.1G233300_v2.0.a1
pyrus_communis	pycom13g09750 pycom16g09470
rosa_chinensis	RchiOBHm_Chr1g0343341 RchiOBHm_Chr1g0366581 RchiOBHm_Chr3g0456071 RchiOBHm_Chr4g0431131 RchiOBHm_Chr7g0183971 RchiOBHm_Chr7g0198741
rosa_laevigata	RLG00000006921
rosa_multiflora	Rmu_sc0005258.1_g000002 Rmu_sc0014629.1_g000007 Rmu_sc0023228.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015160 Rroxscaffold_5G00372730 Rroxscaffold_7G00210320
rosa_rugosa	Rorug04G0248600
rosa_samantha	Rh1CG146700 Rh1CG169800 Rh3AG217500 Rh3DG326500 Rh4AG304900 Rh4BG312100 Rh4CG328400 Rh4DG308700 Rh5AG537300 Rh6BG131200 Rh6DG116800
rosa_wichuraiana	Rw1G009740 Rw4G026500 Rw5G039480 Rw6G009530 Rw6G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	78
AfiI	CCNNNNNNNGG	1 cut(s)	18
AgsI	TTSAA	1 cut(s)	98
AjiI	CACGTC	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	26
AluBI	AGCT	2 cut(s)	71, 176
AluI	AGCT	2 cut(s)	71, 176
Alw26I	GTCTC	1 cut(s)	185
ApeKI	GCWGC	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	2 cut(s)	4, 21
AvaII	GGWCC	2 cut(s)	4, 21
BbvI	GCAGC	1 cut(s)	80
BccI	CCATC	1 cut(s)	20
BciT130I	CCWGG	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	185
BisI	GCNGC	1 cut(s)	69
BlpI	GCTNAGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	70
Bme1390I	CCNGG	1 cut(s)	28
Bme18I	GGWCC	2 cut(s)	4, 21
BmgBI	CACGTC	1 cut(s)	34
BmgT120I	GGNCC	2 cut(s)	4, 21
BmrFI	CCNGG	1 cut(s)	28
Bpu1102I	GCTNAGC	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	80
Bsh1236I	CGCG	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	185
BsmI	GAATGC	1 cut(s)	172
Bsp1720I	GCTNAGC	1 cut(s)	72
BspCNI	CTCAG	1 cut(s)	85
BspFNI	CGCG	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	28
Bst4CI	ACNGT	1 cut(s)	94
BstDEI	CTNAG	1 cut(s)	72
BstFNI	CGCG	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	78
BstMAI	GTCTC	1 cut(s)	185
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstNI	CCWGG	1 cut(s)	28
BstSCI	CCNGG	1 cut(s)	26
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	80
BtgZI	GCGATG	1 cut(s)	28
BtrI	CACGTC	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	90
CfoI	GCGC	1 cut(s)	78
Cfr13I	GGNCC	2 cut(s)	4, 21
CviAII	CATG	1 cut(s)	152
CviJI	RGCY	3 cut(s)	53, 71, 176
CviKI_1	RGCY	3 cut(s)	53, 71, 176
DdeI	CTNAG	1 cut(s)	72
Eco47I	GGWCC	2 cut(s)	4, 21
EcoRII	CCWGG	1 cut(s)	26
FaeI	CATG	1 cut(s)	155
FaiI	YATR	1 cut(s)	153
FatI	CATG	1 cut(s)	151
Fnu4HI	GCNGC	1 cut(s)	69
Fsp4HI	GCNGC	1 cut(s)	69
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	1 cut(s)	69
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	155
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	2 cut(s)	131, 193
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	1 cut(s)	17
Hpy188III	TCNNGA	3 cut(s)	37, 158, 188
Hpy8I	GTNNAC	1 cut(s)	24
HpyAV	CCTTC	2 cut(s)	12, 92
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpyF3I	CTNAG	1 cut(s)	72
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	155
HspAI	GCGC	1 cut(s)	76
LpnPI	CCDG	4 cut(s)	13, 40, 120, 173
Lsp1109I	GCAGC	1 cut(s)	80
MaeII	ACGT	1 cut(s)	33
MluCI	AATT	1 cut(s)	57
MlyI	GAGTC	2 cut(s)	125, 187
MnlI	CCTC	3 cut(s)	17, 100, 104
MspR9I	CCNGG	1 cut(s)	28
Mva1269I	GAATGC	1 cut(s)	172
MvaI	CCWGG	1 cut(s)	28
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	82
NlaIII	CATG	1 cut(s)	155
PctI	GAATGC	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	70
PleI	GAGTC	2 cut(s)	125, 187
PpsI	GAGTC	2 cut(s)	125, 187
Psp6I	CCWGG	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	26
PspPI	GGNCC	2 cut(s)	4, 21
SatI	GCNGC	1 cut(s)	69
Sau96I	GGNCC	2 cut(s)	4, 21
SchI	GAGTC	2 cut(s)	125, 187
ScrFI	CCNGG	1 cut(s)	28
SetI	ASST	5 cut(s)	23, 29, 36, 73, 178
SinI	GGWCC	2 cut(s)	4, 21
Sse9I	AATT	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	26
TaaI	ACNGT	1 cut(s)	94
TaiI	ACGT	1 cut(s)	36
TasI	AATT	1 cut(s)	57
TscAI	CASTG	1 cut(s)	97
TseI	GCWGC	1 cut(s)	68
TspDTI	ATGAA	1 cut(s)	140
TspRI	CASTG	1 cut(s)	97
VpaK11BI	GGWCC	2 cut(s)	4, 21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.