Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002364

Physical Location & Seq

Genomic Coordinates Forward (+)

21421657 .. 21424249

Gene Structure 2593 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G009740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGTCCTCGCCACCGGAAGGTCCACCTGGCACGGCAAGAACATCGCCCAAGCCCTGATTTACAAGTCTAAGCAAAAGCAGAAAGGAATTGTCATTGACTCTGGGAAAGTGATAGTTCATGCTCTTGATGAGAATGCTAAAGCTTACTACAATCTGGAGACTCTTTGGACAACAAAGCCGTCTGAGAAAGAACCAATTCAGGTATGGTTGAAGTTTACAAATTTGTTTTTTTTTTGTTCACTTTTCACCACTACAGCTCCCAAAGGATCCTTGATATTCAGATTTACTTTTGACATTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

100

Amino Acids

11.43

Weight (kDa)

9.63

Isoelectric Point (pI)

26.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsfS	PF02410	1 - 56	2.1e-08	Ribosomal silencing factor during starvation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67620
fragaria_vesca	FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330
malus_domestica	MD13G1112100.v1.1 MD16G1111700.v1.1
prunus_persica	Prupe.1G233300_v2.0.a1
pyrus_communis	pycom13g09750 pycom16g09470
rosa_chinensis	RchiOBHm_Chr1g0343341 RchiOBHm_Chr1g0366581 RchiOBHm_Chr3g0456071 RchiOBHm_Chr4g0431131 RchiOBHm_Chr7g0183971 RchiOBHm_Chr7g0198741
rosa_laevigata	RLG00000006921
rosa_multiflora	Rmu_sc0005258.1_g000002 Rmu_sc0014629.1_g000007 Rmu_sc0023228.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015160 Rroxscaffold_5G00372730 Rroxscaffold_7G00210320
rosa_rugosa	Rorug04G0248600
rosa_samantha	Rh1CG146700 Rh1CG169800 Rh3AG217500 Rh3DG326500 Rh4AG304900 Rh4BG312100 Rh4CG328400 Rh4DG308700 Rh5AG537300 Rh6BG131200 Rh6DG116800
rosa_wichuraiana	Rw1G009740 Rw4G026500 Rw5G039480 Rw6G009530 Rw6G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	261, 274
AcsI	RAATTY	1 cut(s)	220
AfiI	CCNNNNNNNGG	1 cut(s)	18
AgsI	TTSAA	1 cut(s)	211
AjnI	CCWGG	1 cut(s)	26
AluBI	AGCT	2 cut(s)	143, 257
AluI	AGCT	2 cut(s)	143, 257
Alw26I	GTCTC	1 cut(s)	152
AlwI	GGATC	2 cut(s)	261, 274
ApoI	RAATTY	1 cut(s)	220
Asp700I	GAANNNNTTC	1 cut(s)	195
AspS9I	GGNCC	2 cut(s)	4, 21
AsuHPI	GGTGA	1 cut(s)	238
AvaII	GGWCC	2 cut(s)	4, 21
BamHI	GGATCC	1 cut(s)	266
BceAI	ACGGC	2 cut(s)	49, 163
BcgI	CGANNNNNNTGC	2 cut(s)	25, 59
BciT130I	CCWGG	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	152
BfmI	CTRYAG	1 cut(s)	252
Bme1390I	CCNGG	1 cut(s)	28
Bme18I	GGWCC	2 cut(s)	4, 21
BmgT120I	GGNCC	2 cut(s)	4, 21
BmiI	GGNNCC	1 cut(s)	268
BmrFI	CCNGG	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	176
BsaWI	WCCGGW	1 cut(s)	14
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bsc4I	CCNNNNNNNGG	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	15
BslI	CCNNNNNNNGG	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	152
BsmI	GAATGC	1 cut(s)	139
Bsp143I	GATC	1 cut(s)	266
BspCNI	CTCAG	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	268
BspPI	GGATC	2 cut(s)	261, 274
BssMI	GATC	1 cut(s)	266
Bst2UI	CCWGG	1 cut(s)	28
BstDEI	CTNAG	2 cut(s)	69, 183
BstKTI	GATC	1 cut(s)	269
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	1 cut(s)	266
BstNI	CCWGG	1 cut(s)	28
BstSCI	CCNGG	1 cut(s)	26
BstSFI	CTRYAG	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BtgZI	GCGATG	1 cut(s)	28
Cfr13I	GGNCC	2 cut(s)	4, 21
CviAII	CATG	1 cut(s)	119
CviJI	RGCY	4 cut(s)	53, 143, 178, 257
CviKI_1	RGCY	4 cut(s)	53, 143, 178, 257
DdeI	CTNAG	2 cut(s)	69, 183
DpnI	GATC	1 cut(s)	268
DpnII	GATC	1 cut(s)	266
Eco47I	GGWCC	2 cut(s)	4, 21
EcoRII	CCWGG	1 cut(s)	26
FaeI	CATG	1 cut(s)	122
FaiI	YATR	2 cut(s)	120, 205
FatI	CATG	1 cut(s)	118
GsuI	CTGGAG	1 cut(s)	176
HapII	CCGG	1 cut(s)	15
Hin1II	CATG	1 cut(s)	122
HindIII	AAGCTT	1 cut(s)	141
HinfI	GANTC	2 cut(s)	98, 160
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	3 cut(s)	24, 216, 239
Hpy188I	TCNGA	2 cut(s)	184, 281
Hpy188III	TCNNGA	2 cut(s)	125, 155
Hpy8I	GTNNAC	3 cut(s)	24, 216, 239
HpyAV	CCTTC	1 cut(s)	12
HpyF3I	CTNAG	2 cut(s)	69, 183
Hsp92II	CATG	1 cut(s)	122
Kzo9I	GATC	1 cut(s)	266
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	7 cut(s)	13, 28, 40, 68, 87, 140, 185
MalI	GATC	1 cut(s)	268
MboI	GATC	1 cut(s)	266
MflI	RGATCY	1 cut(s)	266
MluCI	AATT	3 cut(s)	87, 195, 220
MlyI	GAGTC	2 cut(s)	92, 154
MnlI	CCTC	1 cut(s)	17
MroXI	GAANNNNTTC	1 cut(s)	195
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	28
Mva1269I	GAATGC	1 cut(s)	139
MvaI	CCWGG	1 cut(s)	28
NdeII	GATC	1 cut(s)	266
NlaIII	CATG	1 cut(s)	122
NlaIV	GGNNCC	1 cut(s)	268
PctI	GAATGC	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	195
PleI	GAGTC	2 cut(s)	92, 154
PpsI	GAGTC	2 cut(s)	92, 154
Psp6I	CCWGG	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	26
PspN4I	GGNNCC	1 cut(s)	268
PspPI	GGNCC	2 cut(s)	4, 21
PsuI	RGATCY	1 cut(s)	266
Sau3AI	GATC	1 cut(s)	266
Sau96I	GGNCC	2 cut(s)	4, 21
SchI	GAGTC	2 cut(s)	92, 154
ScrFI	CCNGG	1 cut(s)	28
SetI	ASST	5 cut(s)	23, 29, 145, 204, 259
SfcI	CTRYAG	1 cut(s)	252
SinI	GGWCC	2 cut(s)	4, 21
Sse9I	AATT	3 cut(s)	87, 195, 220
StyD4I	CCNGG	1 cut(s)	26
TasI	AATT	3 cut(s)	87, 195, 220
TspDTI	ATGAA	1 cut(s)	107
VpaK11BI	GGWCC	2 cut(s)	4, 21
XapI	RAATTY	1 cut(s)	220
XcmI	CCANNNNNNNNNTGG	1 cut(s)	201
XmnI	GAANNNNTTC	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.