Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002364

Physical Location & Seq

Genomic Coordinates Forward (+)

24790180 .. 24792840

Gene Structure 2661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G233300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTCGGCGGCTTTACGATCCCGGTCACTCTCTCTCTACTCTTTACCTTCTTCATCTATATTTCAACAATGGAAGCTAGGGTTTCCTGCTCTGGAGCGCGCCTTCTCCTCATCCGCCAACAGAGGCCTTCTTGATCTCCAAGAGGTCGAGAAGGTTCTCAGCGACGTCAAGGCGGACGACGTGAAGGTCATTCCAGCAAACGACCTCTGTGAATGGGCCGATTTCATGGTTCTCGCCACCGGAAAGTCCGCGTGGCACGTCAAGAACATTGCTCAAGCCCTAATTTACAAGTCTAAGCAAAAGCAGAAAGGAGCTCAGCGGCTAGTGCTTCCCAGTGTGGAAGGGCAAGAGGGAGGAAAGTGGATTGTCATTGACTCTGGCAAAGTTATAGTTCATGCTCTTGATGAGAAGGCTAGAGCGTACTACAATTTGGAGGATCTTTGGTCCAAGAAGAAGCCTGAAGAAGATACAATTCAGGATTTGGAGAAGGCTTTTGTGAAGATTCGTCCCAAGAACAACTCCAAGAGGAAACCGAAACCAGCACTGAAAAGGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

186

Amino Acids

20.78

Weight (kDa)

9.64

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67620
fragaria_vesca	FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330
malus_domestica	MD13G1112100.v1.1 MD16G1111700.v1.1
prunus_persica	Prupe.1G233300_v2.0.a1
pyrus_communis	pycom13g09750 pycom16g09470
rosa_chinensis	RchiOBHm_Chr1g0343341 RchiOBHm_Chr1g0366581 RchiOBHm_Chr3g0456071 RchiOBHm_Chr4g0431131 RchiOBHm_Chr7g0183971 RchiOBHm_Chr7g0198741
rosa_laevigata	RLG00000006921
rosa_multiflora	Rmu_sc0005258.1_g000002 Rmu_sc0014629.1_g000007 Rmu_sc0023228.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015160 Rroxscaffold_5G00372730 Rroxscaffold_7G00210320
rosa_rugosa	Rorug04G0248600
rosa_samantha	Rh1CG146700 Rh1CG169800 Rh3AG217500 Rh3DG326500 Rh4AG304900 Rh4BG312100 Rh4CG328400 Rh4DG308700 Rh5AG537300 Rh6BG131200 Rh6DG116800
rosa_wichuraiana	Rw1G009740 Rw4G026500 Rw5G039480 Rw6G009530 Rw6G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	185
AatII	GACGTC	1 cut(s)	168
AccII	CGCG	2 cut(s)	99, 251
AciI	CCGC	5 cut(s)	8, 114, 173, 249, 319
AclWI	GGATC	2 cut(s)	12, 444
AcuI	CTGAAG	1 cut(s)	480
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	1 cut(s)	422
AgsI	TTSAA	1 cut(s)	65
AjiI	CACGTC	2 cut(s)	181, 259
AluBI	AGCT	2 cut(s)	76, 314
AluI	AGCT	2 cut(s)	76, 314
Alw21I	GWGCWC	1 cut(s)	316
AlwI	GGATC	2 cut(s)	12, 444
AoxI	GGCC	2 cut(s)	124, 216
AspLEI	GCGC	2 cut(s)	99, 101
AspS9I	GGNCC	2 cut(s)	216, 444
AsuC2I	CCSGG	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	444
BanII	GRGCYC	1 cut(s)	316
Bbv12I	GWGCWC	1 cut(s)	316
BcnI	CCSGG	1 cut(s)	22
BfaI	CTAG	3 cut(s)	77, 323, 414
BisI	GCNGC	2 cut(s)	9, 320
BlpI	GCTNAGC	1 cut(s)	315
BlsI	GCNGC	2 cut(s)	10, 321
Bme1390I	CCNGG	1 cut(s)	22
Bme18I	GGWCC	1 cut(s)	444
BmgBI	CACGTC	2 cut(s)	181, 259
BmgT120I	GGNCC	2 cut(s)	216, 444
BmrFI	CCNGG	1 cut(s)	22
BmrI	ACTGGG	1 cut(s)	327
BmuI	ACTGGG	1 cut(s)	327
BpmI	CTGGAG	1 cut(s)	113
Bpu1102I	GCTNAGC	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	258
BpuMI	CCSGG	1 cut(s)	22
BsaHI	GRCGYC	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	333
Bse3DI	GCAATG	1 cut(s)	267
BseGI	GGATG	1 cut(s)	110
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	2 cut(s)	172, 329
BseNI	ACTGG	1 cut(s)	333
BsePI	GCGCGC	1 cut(s)	97
BseRI	GAGGAG	1 cut(s)	97
Bsh1236I	CGCG	2 cut(s)	99, 251
BshFI	GGCC	2 cut(s)	126, 218
BsiHKAI	GWGCWC	1 cut(s)	316
BsiSI	CCGG	2 cut(s)	22, 240
BslFI	GGGAC	1 cut(s)	492
BsmFI	GGGAC	1 cut(s)	492
BsnI	GGCC	2 cut(s)	126, 218
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	3 cut(s)	17, 133, 436
Bsp1720I	GCTNAGC	1 cut(s)	315
BspACI	CCGC	5 cut(s)	8, 114, 173, 249, 319
BspANI	GGCC	2 cut(s)	126, 218
BspCNI	CTCAG	2 cut(s)	171, 328
BspFNI	CGCG	2 cut(s)	99, 251
BspPI	GGATC	2 cut(s)	12, 444
BsrDI	GCAATG	1 cut(s)	267
BsrI	ACTGG	1 cut(s)	333
BssHII	GCGCGC	1 cut(s)	97
BssMI	GATC	3 cut(s)	17, 133, 436
BssNI	GRCGYC	1 cut(s)	165
BstACI	GRCGYC	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	3 cut(s)	158, 294, 315
BstF5I	GGATG	1 cut(s)	110
BstFNI	CGCG	2 cut(s)	99, 251
BstHHI	GCGC	2 cut(s)	99, 101
BstKTI	GATC	3 cut(s)	20, 136, 439
BstMBI	GATC	3 cut(s)	17, 133, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	325
BstSCI	CCNGG	1 cut(s)	20
BstUI	CGCG	2 cut(s)	99, 251
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
BsuRI	GGCC	2 cut(s)	126, 218
BtrI	CACGTC	2 cut(s)	181, 259
BtsCI	GGATG	1 cut(s)	110
BtsIMutI	CAGTG	2 cut(s)	340, 542
Cac8I	GCNNGC	1 cut(s)	99
CfoI	GCGC	2 cut(s)	99, 101
Cfr13I	GGNCC	2 cut(s)	216, 444
Csp6I	GTAC	1 cut(s)	421
CviAII	CATG	2 cut(s)	226, 395
CviQI	GTAC	1 cut(s)	421
DdeI	CTNAG	3 cut(s)	158, 294, 315
DpnI	GATC	3 cut(s)	19, 135, 438
DpnII	GATC	3 cut(s)	17, 133, 436
DrdI	GACNNNNNNGTC	1 cut(s)	185
DseDI	GACNNNNNNGTC	1 cut(s)	185
EciI	GGCGGA	2 cut(s)	103, 188
Ecl136II	GAGCTC	1 cut(s)	314
Eco147I	AGGCCT	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	316
Eco47I	GGWCC	1 cut(s)	444
Eco53kI	GAGCTC	1 cut(s)	314
Eco57I	CTGAAG	1 cut(s)	480
EcoICRI	GAGCTC	1 cut(s)	314
EcoT38I	GRGCYC	1 cut(s)	316
FaeI	CATG	2 cut(s)	229, 398
FaiI	YATR	5 cut(s)	59, 227, 389, 396, 556
FaqI	GGGAC	1 cut(s)	492
FatI	CATG	2 cut(s)	225, 394
Fnu4HI	GCNGC	2 cut(s)	9, 320
FokI	GGATG	1 cut(s)	97
FriOI	GRGCYC	1 cut(s)	316
Fsp4HI	GCNGC	2 cut(s)	9, 320
FspBI	CTAG	3 cut(s)	77, 323, 414
GlaI	GCGC	2 cut(s)	98, 100
GluI	GCNGC	2 cut(s)	9, 320
GsuI	CTGGAG	1 cut(s)	113
HaeIII	GGCC	2 cut(s)	126, 218
HapII	CCGG	2 cut(s)	22, 240
HhaI	GCGC	2 cut(s)	99, 101
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	2 cut(s)	229, 398
Hin6I	GCGC	2 cut(s)	97, 99
HinP1I	GCGC	2 cut(s)	97, 99
HinfI	GANTC	2 cut(s)	374, 502
HpaII	CCGG	2 cut(s)	22, 240
Hpy188III	TCNNGA	6 cut(s)	92, 131, 148, 262, 401, 476
Hpy99I	CGWCG	2 cut(s)	167, 182
HpyAV	CCTTC	8 cut(s)	57, 112, 137, 145, 178, 335, 403, 481
HpyCH4IV	ACGT	3 cut(s)	165, 180, 258
HpyF10VI	GCNNNNNNNGC	1 cut(s)	325
HpyF3I	CTNAG	3 cut(s)	158, 294, 315
HpySE526I	ACGT	3 cut(s)	165, 180, 258
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	2 cut(s)	229, 398
HspAI	GCGC	2 cut(s)	97, 99
Kzo9I	GATC	3 cut(s)	17, 133, 436
LmnI	GCTCC	2 cut(s)	94, 311
MaeI	CTAG	3 cut(s)	77, 323, 414
MaeII	ACGT	3 cut(s)	165, 180, 258
MaeIII	GTNAC	1 cut(s)	24
MalI	GATC	3 cut(s)	19, 135, 438
MboI	GATC	3 cut(s)	17, 133, 436
MboII	GAAGA	5 cut(s)	42, 463, 473, 476, 511
MflI	RGATCY	1 cut(s)	436
MhlI	GDGCHC	1 cut(s)	316
MluCI	AATT	3 cut(s)	282, 427, 471
MlyI	GAGTC	1 cut(s)	368
MnlI	CCTC	8 cut(s)	116, 118, 136, 215, 343, 347, 427, 519
MspA1I	CMGCKG	1 cut(s)	319
MspI	CCGG	2 cut(s)	22, 240
MspR9I	CCNGG	1 cut(s)	22
MvnI	CGCG	2 cut(s)	99, 251
MwoI	GCNNNNNNNGC	1 cut(s)	325
NciI	CCSGG	1 cut(s)	22
NdeII	GATC	3 cut(s)	17, 133, 436
NlaIII	CATG	2 cut(s)	229, 398
NmuCI	GTSAC	1 cut(s)	24
PauI	GCGCGC	1 cut(s)	97
PceI	AGGCCT	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	502
PkrI	GCNGC	2 cut(s)	10, 321
PleI	GAGTC	1 cut(s)	368
PpsI	GAGTC	1 cut(s)	368
Psp124BI	GAGCTC	1 cut(s)	316
PspPI	GGNCC	2 cut(s)	216, 444
PsuI	RGATCY	1 cut(s)	436
PteI	GCGCGC	1 cut(s)	97
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
SacI	GAGCTC	1 cut(s)	316
SatI	GCNGC	2 cut(s)	9, 320
Sau3AI	GATC	3 cut(s)	17, 133, 436
Sau96I	GGNCC	2 cut(s)	216, 444
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	1 cut(s)	22
SduI	GDGCHC	1 cut(s)	316
SinI	GGWCC	1 cut(s)	444
SmlI	CTYRAG	1 cut(s)	273
SmoI	CTYRAG	1 cut(s)	273
Sse9I	AATT	3 cut(s)	282, 427, 471
SseBI	AGGCCT	1 cut(s)	126
SsiI	CCGC	5 cut(s)	8, 114, 173, 249, 319
SspMI	CTAG	3 cut(s)	77, 323, 414
SstI	GAGCTC	1 cut(s)	316
StuI	AGGCCT	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	20
TaiI	ACGT	3 cut(s)	168, 183, 261
TaqI	TCGA	1 cut(s)	147
TasI	AATT	3 cut(s)	282, 427, 471
TauI	GCSGC	2 cut(s)	11, 322
TfiI	GAWTC	1 cut(s)	502
TscAI	CASTG	2 cut(s)	340, 549
TseFI	GTSAC	1 cut(s)	24
Tsp45I	GTSAC	1 cut(s)	24
TspDTI	ATGAA	3 cut(s)	42, 214, 383
TspRI	CASTG	2 cut(s)	340, 549
VpaK11BI	GGWCC	1 cut(s)	444
XspI	CTAG	3 cut(s)	77, 323, 414
ZraI	GACGTC	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.