Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002364

Physical Location & Seq

Genomic Coordinates Reverse (-)

60595198 .. 60601288

Gene Structure 6091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00210320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGCCCATTACAAGAGAGGTGCGATCTCATGTTGGCCGCTCTACGCTCCCGATCATCGTTCTCACCGCCTTCTTCGACAATGGAGGCCGGGGTTTCCATCTCTGCACCAGGCCTTCTCCTCCTCCGCCGCCGCCGCCGCCAAGGAAGGCTTGCTTGATCTCCGGAGGTCGAGACGGTTCTCGCCGAAGTCAAGGCCGACGACGTCAAGGTCGACCGGCGAATAAGCACCGCGAGTGGGCCGATTTCATGGTCCTCGCCACCGGAAGGTCCACCTGGTACGTCAAGAACATCGCCCAAGCCCTAATTTACAAGGCAGGGAAAGTGATAGTTCATGCTCTTGATGAGAATGCTAAAGCTTACTACAATCTGGAGACTCTTTGGACAACAAAGCCGTCTGAGAAAGAACCAATTCAGCCTGCATTTTTGGAGGATAAATCACTAATTCCTGTCAACCTCTGGATGAACAATGCTCAAGCTAGATCAAGCACTCACTATGATCCACACCATAACCTTCTCTGCTTAGTTTCTGGCTGTAAACAAGCTTGGAATGCTAAAAGTTTTGGTGGTATTACTTGTGGTAAAATTGAGCAGCAGCATGGTTCTAATTTTGGTAGCCATGACGAAAACAGCAAAGCTGAAGAAGCGAAACAGAATAAGACAGATAAGATCTACAACCGATACAAAGATTCATCTGTGATGAATGATAGCAATGGTAACAGCTATAAAATGTTCCTGATAGTCGGTGGTCTTGCAAGTGAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

254

Amino Acids

28.36

Weight (kDa)

9.64

Isoelectric Point (pI)

63.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_8	PF13621	134 - 180	3.9e-09	Cupin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67620
fragaria_vesca	FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330
malus_domestica	MD13G1112100.v1.1 MD16G1111700.v1.1
prunus_persica	Prupe.1G233300_v2.0.a1
pyrus_communis	pycom13g09750 pycom16g09470
rosa_chinensis	RchiOBHm_Chr1g0343341 RchiOBHm_Chr1g0366581 RchiOBHm_Chr3g0456071 RchiOBHm_Chr4g0431131 RchiOBHm_Chr7g0183971 RchiOBHm_Chr7g0198741
rosa_laevigata	RLG00000006921
rosa_multiflora	Rmu_sc0005258.1_g000002 Rmu_sc0014629.1_g000007 Rmu_sc0023228.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015160 Rroxscaffold_5G00372730 Rroxscaffold_7G00210320
rosa_rugosa	Rorug04G0248600
rosa_samantha	Rh1CG146700 Rh1CG169800 Rh3AG217500 Rh3DG326500 Rh4AG304900 Rh4BG312100 Rh4CG328400 Rh4DG308700 Rh5AG537300 Rh6BG131200 Rh6DG116800
rosa_wichuraiana	Rw1G009740 Rw4G026500 Rw5G039480 Rw6G009530 Rw6G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	207
AatII	GACGTC	1 cut(s)	205
AccBSI	CCGCTC	1 cut(s)	39
AccI	GTMKAC	1 cut(s)	211
AccII	CGCG	1 cut(s)	231
AccIII	TCCGGA	1 cut(s)	161
AciI	CCGC	8 cut(s)	37, 66, 125, 128, 131, 134, 137, 229
AclWI	GGATC	1 cut(s)	491
AcoI	YGGCCR	1 cut(s)	34
AcuI	CTGAAG	1 cut(s)	657
AcyI	GRCGYC	1 cut(s)	202
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	2 cut(s)	235, 264
AjnI	CCWGG	2 cut(s)	107, 272
AluBI	AGCT	5 cut(s)	356, 476, 542, 635, 720
AluI	AGCT	5 cut(s)	356, 476, 542, 635, 720
Alw26I	GTCTC	2 cut(s)	165, 365
AlwI	GGATC	1 cut(s)	491
Aor13HI	TCCGGA	1 cut(s)	161
AoxI	GGCC	5 cut(s)	34, 85, 110, 193, 237
ApeKI	GCWGC	2 cut(s)	589, 592
Asp700I	GAANNNNTTC	1 cut(s)	408
AspS9I	GGNCC	3 cut(s)	237, 250, 267
AsuC2I	CCSGG	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	55
AvaII	GGWCC	2 cut(s)	250, 267
BbvI	GCAGC	2 cut(s)	601, 604
BccI	CCATC	1 cut(s)	105
BceAI	ACGGC	1 cut(s)	376
BciT130I	CCWGG	2 cut(s)	109, 274
BcnI	CCSGG	1 cut(s)	89
BcoDI	GTCTC	2 cut(s)	165, 365
BfaI	CTAG	1 cut(s)	477
BglII	AGATCT	1 cut(s)	666
BisI	GCNGC	7 cut(s)	37, 128, 131, 134, 137, 590, 593
BlsI	GCNGC	7 cut(s)	38, 129, 132, 135, 138, 591, 594
Bme1390I	CCNGG	3 cut(s)	89, 109, 274
Bme18I	GGWCC	2 cut(s)	250, 267
BmgT120I	GGNCC	3 cut(s)	237, 250, 267
BmrFI	CCNGG	3 cut(s)	89, 109, 274
BpmI	CTGGAG	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	456
BpuMI	CCSGG	1 cut(s)	89
BsaHI	GRCGYC	1 cut(s)	202
BsaJI	CCNNGG	2 cut(s)	88, 140
BsaWI	WCCGGW	2 cut(s)	161, 260
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 264
Bse118I	RCCGGY	1 cut(s)	214
Bse3DI	GCAATG	1 cut(s)	715
BseAI	TCCGGA	1 cut(s)	161
BseBI	CCWGG	2 cut(s)	109, 274
BseDI	CCNNGG	2 cut(s)	88, 140
BseGI	GGATG	1 cut(s)	465
BseLI	CCNNNNNNNGG	2 cut(s)	235, 264
BseMI	GCAATG	1 cut(s)	715
BseMII	CTCAG	1 cut(s)	387
BseRI	GAGGAG	2 cut(s)	108, 111
BseXI	GCAGC	2 cut(s)	601, 604
BsgI	GTGCAG	1 cut(s)	88
Bsh1236I	CGCG	1 cut(s)	231
Bsh1285I	CGRYCG	1 cut(s)	215
BshFI	GGCC	5 cut(s)	36, 87, 112, 195, 239
BsiEI	CGRYCG	1 cut(s)	215
BsiSI	CCGG	4 cut(s)	88, 162, 215, 261
BslI	CCNNNNNNNGG	2 cut(s)	235, 264
BsmAI	GTCTC	2 cut(s)	165, 365
BsmBI	CGTCTC	1 cut(s)	165
BsmI	GAATGC	2 cut(s)	352, 553
BsnI	GGCC	5 cut(s)	36, 87, 112, 195, 239
Bsp13I	TCCGGA	1 cut(s)	161
Bsp143I	GATC	6 cut(s)	23, 51, 156, 479, 496, 666
BspACI	CCGC	8 cut(s)	37, 66, 125, 128, 131, 134, 137, 229
BspANI	GGCC	5 cut(s)	36, 87, 112, 195, 239
BspCNI	CTCAG	1 cut(s)	388
BspEI	TCCGGA	1 cut(s)	161
BspFNI	CGCG	1 cut(s)	231
BspPI	GGATC	1 cut(s)	491
BsrBI	CCGCTC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	715
BsrFI	RCCGGY	1 cut(s)	214
BssAI	RCCGGY	1 cut(s)	214
BssECI	CCNNGG	2 cut(s)	88, 140
BssMI	GATC	6 cut(s)	23, 51, 156, 479, 496, 666
BssNI	GRCGYC	1 cut(s)	202
BssT1I	CCWWGG	1 cut(s)	140
Bst2UI	CCWGG	2 cut(s)	109, 274
Bst4CI	ACNGT	1 cut(s)	176
BstACI	GRCGYC	1 cut(s)	202
BstC8I	GCNNGC	2 cut(s)	151, 417
BstDEI	CTNAG	2 cut(s)	396, 520
BstF5I	GGATG	1 cut(s)	465
BstFNI	CGCG	1 cut(s)	231
BstKTI	GATC	6 cut(s)	26, 54, 159, 482, 499, 669
BstMAI	GTCTC	2 cut(s)	165, 365
BstMBI	GATC	6 cut(s)	23, 51, 156, 479, 496, 666
BstMCI	CGRYCG	1 cut(s)	215
BstMWI	GCNNNNNNNGC	4 cut(s)	133, 136, 548, 641
BstNI	CCWGG	2 cut(s)	109, 274
BstSCI	CCNGG	3 cut(s)	87, 107, 272
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	2 cut(s)	601, 604
BstX2I	RGATCY	1 cut(s)	666
BstYI	RGATCY	1 cut(s)	666
BsuRI	GGCC	5 cut(s)	36, 87, 112, 195, 239
BtgZI	GCGATG	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	465
Cac8I	GCNNGC	2 cut(s)	151, 417
Cfr10I	RCCGGY	1 cut(s)	214
Cfr13I	GGNCC	3 cut(s)	237, 250, 267
CsiI	ACCWGGT	1 cut(s)	272
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	5 cut(s)	29, 247, 332, 596, 617
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	2 cut(s)	396, 520
DpnI	GATC	6 cut(s)	25, 53, 158, 481, 498, 668
DpnII	GATC	6 cut(s)	23, 51, 156, 479, 496, 666
DrdI	GACNNNNNNGTC	1 cut(s)	207
DseDI	GACNNNNNNGTC	1 cut(s)	207
EaeI	YGGCCR	1 cut(s)	34
EciI	GGCGGA	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	140
Eco147I	AGGCCT	1 cut(s)	112
Eco47I	GGWCC	2 cut(s)	250, 267
Eco57I	CTGAAG	1 cut(s)	657
EcoRII	CCWGG	2 cut(s)	107, 272
EcoT14I	CCWWGG	1 cut(s)	140
ErhI	CCWWGG	1 cut(s)	140
Esp3I	CGTCTC	1 cut(s)	165
FaeI	CATG	5 cut(s)	32, 250, 335, 599, 620
FaiI	YATR	8 cut(s)	30, 248, 333, 495, 507, 597, 618, 723
FalI	AAGNNNNNCTT	4 cut(s)	133, 165, 137, 169
FatI	CATG	5 cut(s)	28, 246, 331, 595, 616
FblI	GTMKAC	1 cut(s)	211
Fnu4HI	GCNGC	7 cut(s)	37, 128, 131, 134, 137, 590, 593
FokI	GGATG	1 cut(s)	472
Fsp4HI	GCNGC	7 cut(s)	37, 128, 131, 134, 137, 590, 593
FspBI	CTAG	1 cut(s)	477
GluI	GCNGC	7 cut(s)	37, 128, 131, 134, 137, 590, 593
GsuI	CTGGAG	1 cut(s)	389
HaeIII	GGCC	5 cut(s)	36, 87, 112, 195, 239
HapII	CCGG	4 cut(s)	88, 162, 215, 261
Hin1I	GRCGYC	1 cut(s)	202
Hin1II	CATG	5 cut(s)	32, 250, 335, 599, 620
HincII	GTYRAC	2 cut(s)	212, 451
HindII	GTYRAC	2 cut(s)	212, 451
HindIII	AAGCTT	2 cut(s)	354, 540
HinfI	GANTC	2 cut(s)	373, 686
HpaII	CCGG	4 cut(s)	88, 162, 215, 261
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	4 cut(s)	212, 270, 451, 536
Hpy188I	TCNGA	1 cut(s)	397
Hpy188III	TCNNGA	8 cut(s)	49, 162, 170, 283, 338, 368, 457, 733
Hpy8I	GTNNAC	4 cut(s)	212, 270, 451, 536
Hpy99I	CGWCG	2 cut(s)	201, 204
HpyAV	CCTTC	5 cut(s)	79, 123, 139, 258, 521
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4IV	ACGT	2 cut(s)	202, 279
HpyCH4V	TGCA	3 cut(s)	105, 419, 752
HpyF10VI	GCNNNNNNNGC	4 cut(s)	133, 136, 548, 641
HpyF3I	CTNAG	2 cut(s)	396, 520
HpySE526I	ACGT	2 cut(s)	202, 279
Hsp92I	GRCGYC	1 cut(s)	202
Hsp92II	CATG	5 cut(s)	32, 250, 335, 599, 620
Kpn2I	TCCGGA	1 cut(s)	161
Kzo9I	GATC	6 cut(s)	23, 51, 156, 479, 496, 666
LmnI	GCTCC	1 cut(s)	51
Lsp1109I	GCAGC	2 cut(s)	601, 604
MabI	ACCWGGT	1 cut(s)	272
MaeI	CTAG	1 cut(s)	477
MaeII	ACGT	2 cut(s)	202, 279
MaeIII	GTNAC	1 cut(s)	713
MalI	GATC	6 cut(s)	25, 53, 158, 481, 498, 668
MbiI	CCGCTC	1 cut(s)	39
MboI	GATC	6 cut(s)	23, 51, 156, 479, 496, 666
MboII	GAAGA	2 cut(s)	64, 650
MflI	RGATCY	1 cut(s)	666
MluCI	AATT	5 cut(s)	303, 408, 441, 582, 604
MlyI	GAGTC	1 cut(s)	367
MnlI	CCTC	8 cut(s)	10, 77, 129, 132, 158, 263, 421, 464
MroI	TCCGGA	1 cut(s)	161
MroXI	GAANNNNTTC	1 cut(s)	408
MseI	TTAA	1 cut(s)	763
MspI	CCGG	4 cut(s)	88, 162, 215, 261
MspR9I	CCNGG	3 cut(s)	89, 109, 274
Mva1269I	GAATGC	2 cut(s)	352, 553
MvaI	CCWGG	2 cut(s)	109, 274
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	4 cut(s)	133, 136, 548, 641
NciI	CCSGG	1 cut(s)	89
NdeII	GATC	6 cut(s)	23, 51, 156, 479, 496, 666
NlaIII	CATG	5 cut(s)	32, 250, 335, 599, 620
PceI	AGGCCT	1 cut(s)	112
PcsI	WCGNNNNNNNCGW	1 cut(s)	208
PctI	GAATGC	2 cut(s)	352, 553
PdmI	GAANNNNTTC	1 cut(s)	408
PfeI	GAWTC	1 cut(s)	686
PflFI	GACNNNGTC	1 cut(s)	201
PkrI	GCNGC	7 cut(s)	38, 129, 132, 135, 138, 591, 594
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
Psp6I	CCWGG	2 cut(s)	107, 272
PspGI	CCWGG	2 cut(s)	107, 272
PspPI	GGNCC	3 cut(s)	237, 250, 267
PsuI	RGATCY	1 cut(s)	666
PsyI	GACNNNGTC	1 cut(s)	201
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SalI	GTCGAC	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	763
SatI	GCNGC	7 cut(s)	37, 128, 131, 134, 137, 590, 593
Sau3AI	GATC	6 cut(s)	23, 51, 156, 479, 496, 666
Sau96I	GGNCC	3 cut(s)	237, 250, 267
SchI	GAGTC	1 cut(s)	367
ScrFI	CCNGG	3 cut(s)	89, 109, 274
SexAI	ACCWGGT	1 cut(s)	272
SinI	GGWCC	2 cut(s)	250, 267
SmlI	CTYRAG	1 cut(s)	471
SmoI	CTYRAG	1 cut(s)	471
Sse9I	AATT	5 cut(s)	303, 408, 441, 582, 604
SseBI	AGGCCT	1 cut(s)	112
SsiI	CCGC	8 cut(s)	37, 66, 125, 128, 131, 134, 137, 229
SspMI	CTAG	1 cut(s)	477
StuI	AGGCCT	1 cut(s)	112
StyD4I	CCNGG	3 cut(s)	87, 107, 272
StyI	CCWWGG	1 cut(s)	140
TaaI	ACNGT	1 cut(s)	176
TaiI	ACGT	2 cut(s)	205, 282
TaqI	TCGA	3 cut(s)	75, 169, 211
TasI	AATT	5 cut(s)	303, 408, 441, 582, 604
TauI	GCSGC	5 cut(s)	39, 130, 133, 136, 139
TfiI	GAWTC	1 cut(s)	686
Tru1I	TTAA	1 cut(s)	763
Tru9I	TTAA	1 cut(s)	763
TseI	GCWGC	2 cut(s)	589, 592
TspDTI	ATGAA	5 cut(s)	235, 320, 476, 678, 713
Tth111I	GACNNNGTC	1 cut(s)	201
VpaK11BI	GGWCC	2 cut(s)	250, 267
XmiI	GTMKAC	1 cut(s)	211
XmnI	GAANNNNTTC	1 cut(s)	408
XspI	CTAG	1 cut(s)	477
ZraI	GACGTC	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.