Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002364

Physical Location & Seq

Genomic Coordinates Reverse (-)

32002797 .. 32035486

Gene Structure 32690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG146700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGAAGCGGGGCCTGGATTTTGTTGTACAGATTGGACTGCAGTTGGTATTGGCCAGATACAAAAACATGTGGGTGTTCAAAATTCGAAAATAAACTCTATCGTACGAAACTATGGATCATGTGCAATACACGTCCCTCCTTACGTCACTAAGTCATTAAATACGGGAAAGTATGCTCCCACTGTAGGGTCGTCTAAGCAAAAGCAGAAAGGAGCTCAGCGCGTGGTGCTTCCCACTGTTGAAGGGCAAGAGGGAGGCAAGTGGATTGTCATTGACTCTGGGAAAGTGATAGTTCATGCTCTTGATGAGAATGCTAAAGCTTACTACAATCTGGAGACTCTTTGGACAACAAAGCCGTCTGAGAAAGAACCAATTCAGCCTGCATTTTTGGAGGATAAATCACTAATTCCTGTCAACCTCTGGATGAACAATGCTCAAGCTAGATCAAGCACTCACTATGATCCACACCATAACCTTCTCTGCTTAGTTTCTGGCTGTAAACAAGATCCTGAGGATTTAAGAGAAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

176

Amino Acids

19.31

Weight (kDa)

7.66

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsfS	PF02410	69 - 115	1.3e-10	Ribosomal silencing factor during starvation
Cupin_8	PF13621	122 - 168	2.9e-09	Cupin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67620
fragaria_vesca	FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330
malus_domestica	MD13G1112100.v1.1 MD16G1111700.v1.1
prunus_persica	Prupe.1G233300_v2.0.a1
pyrus_communis	pycom13g09750 pycom16g09470
rosa_chinensis	RchiOBHm_Chr1g0343341 RchiOBHm_Chr1g0366581 RchiOBHm_Chr3g0456071 RchiOBHm_Chr4g0431131 RchiOBHm_Chr7g0183971 RchiOBHm_Chr7g0198741
rosa_laevigata	RLG00000006921
rosa_multiflora	Rmu_sc0005258.1_g000002 Rmu_sc0014629.1_g000007 Rmu_sc0023228.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015160 Rroxscaffold_5G00372730 Rroxscaffold_7G00210320
rosa_rugosa	Rorug04G0248600
rosa_samantha	Rh1CG146700 Rh1CG169800 Rh3AG217500 Rh3DG326500 Rh4AG304900 Rh4BG312100 Rh4CG328400 Rh4DG308700 Rh5AG537300 Rh6BG131200 Rh6DG116800
rosa_wichuraiana	Rw1G009740 Rw4G026500 Rw5G039480 Rw6G009530 Rw6G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	222
AciI	CCGC	1 cut(s)	8
AclWI	GGATC	3 cut(s)	124, 455, 500
AcoI	YGGCCR	1 cut(s)	52
AcsI	RAATTY	1 cut(s)	82
AfaI	GTAC	2 cut(s)	28, 105
AfiI	CCNNNNNNNGG	2 cut(s)	185, 186
AflIII	ACRYGT	2 cut(s)	67, 130
AgsI	TTSAA	2 cut(s)	80, 242
AjiI	CACGTC	1 cut(s)	133
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	3 cut(s)	215, 320, 440
AluI	AGCT	3 cut(s)	215, 320, 440
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	329
AlwI	GGATC	3 cut(s)	124, 455, 500
AoxI	GGCC	2 cut(s)	11, 52
ApoI	RAATTY	1 cut(s)	82
Asp700I	GAANNNNTTC	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	222
AspS9I	GGNCC	1 cut(s)	11
AsuII	TTCGAA	1 cut(s)	86
AxyI	CCTNAGG	1 cut(s)	510
BalI	TGGCCA	1 cut(s)	54
BanII	GRGCYC	1 cut(s)	217
Bbv12I	GWGCWC	1 cut(s)	217
BceAI	ACGGC	1 cut(s)	340
BciT130I	CCWGG	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	329
BfaI	CTAG	1 cut(s)	441
BfmI	CTRYAG	2 cut(s)	39, 183
BlpI	GCTNAGC	1 cut(s)	216
Bme1390I	CCNGG	1 cut(s)	15
BmgBI	CACGTC	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	15
BpmI	CTGGAG	1 cut(s)	353
Bpu1102I	GCTNAGC	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	86
BpuEI	CTTGAG	1 cut(s)	420
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 186
Bse21I	CCTNAGG	1 cut(s)	510
BseBI	CCWGG	1 cut(s)	15
BseGI	GGATG	1 cut(s)	429
BseLI	CCNNNNNNNGG	2 cut(s)	185, 186
BseMII	CTCAG	3 cut(s)	230, 351, 501
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	2 cut(s)	13, 54
BsiHKAI	GWGCWC	1 cut(s)	217
BsiWI	CGTACG	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	2 cut(s)	185, 186
BsmAI	GTCTC	1 cut(s)	329
BsmFI	GGGAC	1 cut(s)	119
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	2 cut(s)	13, 54
Bsp119I	TTCGAA	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp1407I	TGTACA	1 cut(s)	26
Bsp143I	GATC	4 cut(s)	116, 443, 460, 505
Bsp1720I	GCTNAGC	1 cut(s)	216
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	2 cut(s)	13, 54
BspCNI	CTCAG	3 cut(s)	229, 352, 502
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	12
BspMAI	CTGCAG	1 cut(s)	43
BspPI	GGATC	3 cut(s)	124, 455, 500
BspT104I	TTCGAA	1 cut(s)	86
BsrGI	TGTACA	1 cut(s)	26
BssMI	GATC	4 cut(s)	116, 443, 460, 505
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	2 cut(s)	184, 238
BstAUI	TGTACA	1 cut(s)	26
BstBI	TTCGAA	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	6 cut(s)	150, 195, 216, 360, 484, 510
BstF5I	GGATG	1 cut(s)	429
BstFNI	CGCG	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	222
BstKTI	GATC	4 cut(s)	119, 446, 463, 508
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	4 cut(s)	116, 443, 460, 505
BstMWI	GCNNNNNNNGC	1 cut(s)	226
BstNI	CCWGG	1 cut(s)	15
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	13
BstSFI	CTRYAG	2 cut(s)	39, 183
BstUI	CGCG	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	505
Bsu36I	CCTNAGG	1 cut(s)	510
BsuRI	GGCC	2 cut(s)	13, 54
BtrI	CACGTC	1 cut(s)	133
BtsCI	GGATG	1 cut(s)	429
BtsIMutI	CAGTG	2 cut(s)	180, 234
Cac8I	GCNNGC	1 cut(s)	381
CfoI	GCGC	1 cut(s)	222
Cfr13I	GGNCC	1 cut(s)	11
Csp6I	GTAC	2 cut(s)	27, 104
CviAII	CATG	3 cut(s)	68, 120, 296
CviJI	RGCY	8 cut(s)	13, 54, 215, 320, 355, 379, 440, 495
CviKI_1	RGCY	8 cut(s)	13, 54, 215, 320, 355, 379, 440, 495
CviQI	GTAC	2 cut(s)	27, 104
DdeI	CTNAG	6 cut(s)	150, 195, 216, 360, 484, 510
DpnI	GATC	4 cut(s)	118, 445, 462, 507
DpnII	GATC	4 cut(s)	116, 443, 460, 505
EaeI	YGGCCR	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	215
Eco24I	GRGCYC	1 cut(s)	217
Eco53kI	GAGCTC	1 cut(s)	215
Eco81I	CCTNAGG	1 cut(s)	510
EcoICRI	GAGCTC	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	13
EcoT38I	GRGCYC	1 cut(s)	217
FaeI	CATG	3 cut(s)	71, 123, 299
FaiI	YATR	7 cut(s)	69, 114, 121, 174, 297, 459, 471
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	3 cut(s)	67, 119, 295
FokI	GGATG	1 cut(s)	436
FriOI	GRGCYC	1 cut(s)	217
FspBI	CTAG	1 cut(s)	441
GlaI	GCGC	1 cut(s)	221
GsuI	CTGGAG	1 cut(s)	353
HaeIII	GGCC	2 cut(s)	13, 54
HhaI	GCGC	1 cut(s)	222
Hin1II	CATG	3 cut(s)	71, 123, 299
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HindIII	AAGCTT	1 cut(s)	318
HinfI	GANTC	2 cut(s)	275, 337
Hpy166II	GTNNAC	2 cut(s)	415, 500
Hpy188I	TCNGA	1 cut(s)	361
Hpy188III	TCNNGA	4 cut(s)	302, 332, 421, 509
Hpy8I	GTNNAC	2 cut(s)	415, 500
HpyAV	CCTTC	3 cut(s)	236, 485, 518
HpyCH4III	ACNGT	2 cut(s)	184, 238
HpyCH4IV	ACGT	2 cut(s)	132, 144
HpyCH4V	TGCA	3 cut(s)	41, 125, 383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	226
HpyF3I	CTNAG	6 cut(s)	150, 195, 216, 360, 484, 510
HpySE526I	ACGT	2 cut(s)	132, 144
Hsp92II	CATG	3 cut(s)	71, 123, 299
HspAI	GCGC	1 cut(s)	220
Kzo9I	GATC	4 cut(s)	116, 443, 460, 505
LmnI	GCTCC	2 cut(s)	181, 212
LpnPI	CCDG	9 cut(s)	27, 68, 264, 317, 393, 406, 423, 477, 522
MaeI	CTAG	1 cut(s)	441
MaeII	ACGT	2 cut(s)	132, 144
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	4 cut(s)	118, 445, 462, 507
MboI	GATC	4 cut(s)	116, 443, 460, 505
MflI	RGATCY	1 cut(s)	505
MhlI	GDGCHC	1 cut(s)	217
MlsI	TGGCCA	1 cut(s)	54
MluCI	AATT	3 cut(s)	82, 372, 405
MluNI	TGGCCA	1 cut(s)	54
MlyI	GAGTC	2 cut(s)	269, 331
MnlI	CCTC	6 cut(s)	147, 244, 248, 385, 428, 505
Mox20I	TGGCCA	1 cut(s)	54
MroXI	GAANNNNTTC	1 cut(s)	372
MscI	TGGCCA	1 cut(s)	54
MseI	TTAA	2 cut(s)	158, 518
MslI	CAYNNNNRTG	1 cut(s)	72
Msp20I	TGGCCA	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	15
Mva1269I	GAATGC	1 cut(s)	316
MvaI	CCWGG	1 cut(s)	15
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	1 cut(s)	226
NdeII	GATC	4 cut(s)	116, 443, 460, 505
NlaIII	CATG	3 cut(s)	71, 123, 299
NlaIV	GGNNCC	1 cut(s)	12
NmuCI	GTSAC	1 cut(s)	145
NspI	RCATGY	1 cut(s)	71
NspV	TTCGAA	1 cut(s)	86
PciI	ACATGT	1 cut(s)	67
PctI	GAATGC	1 cut(s)	316
PdmI	GAANNNNTTC	1 cut(s)	372
Pfl23II	CGTACG	1 cut(s)	103
PleI	GAGTC	2 cut(s)	269, 331
PpsI	GAGTC	2 cut(s)	269, 331
PscI	ACATGT	1 cut(s)	67
Psp124BI	GAGCTC	1 cut(s)	217
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspLI	CGTACG	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	11
PstI	CTGCAG	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	505
RsaI	GTAC	2 cut(s)	28, 105
RsaNI	GTAC	2 cut(s)	27, 104
RseI	CAYNNNNRTG	1 cut(s)	72
SacI	GAGCTC	1 cut(s)	217
SaqAI	TTAA	2 cut(s)	158, 518
Sau3AI	GATC	4 cut(s)	116, 443, 460, 505
Sau96I	GGNCC	1 cut(s)	11
SchI	GAGTC	2 cut(s)	269, 331
ScrFI	CCNGG	1 cut(s)	15
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	8 cut(s)	135, 147, 217, 322, 420, 442, 477, 529
SfcI	CTRYAG	2 cut(s)	39, 183
SfuI	TTCGAA	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	435
SmoI	CTYRAG	1 cut(s)	435
Sse9I	AATT	3 cut(s)	82, 372, 405
SsiI	CCGC	1 cut(s)	8
SspMI	CTAG	1 cut(s)	441
SstI	GAGCTC	1 cut(s)	217
StyD4I	CCNGG	1 cut(s)	13
TaaI	ACNGT	2 cut(s)	184, 238
TaiI	ACGT	2 cut(s)	135, 147
TaqI	TCGA	1 cut(s)	86
TasI	AATT	3 cut(s)	82, 372, 405
TatI	WGTACW	1 cut(s)	26
Tru1I	TTAA	2 cut(s)	158, 518
Tru9I	TTAA	2 cut(s)	158, 518
TscAI	CASTG	2 cut(s)	187, 241
TseFI	GTSAC	1 cut(s)	145
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	2 cut(s)	284, 440
TspRI	CASTG	2 cut(s)	187, 241
XapI	RAATTY	1 cut(s)	82
XceI	RCATGY	1 cut(s)	71
XmnI	GAANNNNTTC	1 cut(s)	372
XspI	CTAG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.