Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002364

Physical Location & Seq

Genomic Coordinates Reverse (-)

35846249 .. 35865506

Gene Structure 19258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG326500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGATCAAGAGTGAGAAAATTTCTCAACTCCTGGATTGCATTTTGCATTCTAAGCAAAAGCAGAAAGGAGCTCAGCGCGTGGTGCTTCCCACTGTTGAAGGGCAAGAGGGAGGCAAGTGGATTGTCATTGACTCTGGGAAAGTGATAGTTCATGCTCTTGATGAGAATGCTAAAGCTTACTACAATCTGGAGACTCTTTGGACAACAAAGCCGTCTGAGAAAGAACCAATTCAGCCTGCATTTTTGGAGGATAAATCACTAATTCCTGTCAACCTCTGGATGAACAATGCTCAAGCTAGATCAAGCACTCACTATGATCCACACCATAACCTTCTCTGCTTAGTTTCTGGCTGTAAACAAGTGCTTCACAGAGCTGATCTATTCGGTGCGCCTACAAAAAATTGGCATTGGGTGGATGGAACTTATAACTCTGTTGCTATGGCCAAGAGAAGAAGTGAGAACATCCTCTGTTATTTTTCTCTTTATGTGACAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

165

Amino Acids

18.76

Weight (kDa)

8.31

Isoelectric Point (pI)

51.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsfS	PF02410	17 - 67	5.3e-11	Ribosomal silencing factor during starvation
Cupin_8	PF13621	73 - 121	7.4e-10	Cupin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67620
fragaria_vesca	FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330
malus_domestica	MD13G1112100.v1.1 MD16G1111700.v1.1
prunus_persica	Prupe.1G233300_v2.0.a1
pyrus_communis	pycom13g09750 pycom16g09470
rosa_chinensis	RchiOBHm_Chr1g0343341 RchiOBHm_Chr1g0366581 RchiOBHm_Chr3g0456071 RchiOBHm_Chr4g0431131 RchiOBHm_Chr7g0183971 RchiOBHm_Chr7g0198741
rosa_laevigata	RLG00000006921
rosa_multiflora	Rmu_sc0005258.1_g000002 Rmu_sc0014629.1_g000007 Rmu_sc0023228.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015160 Rroxscaffold_5G00372730 Rroxscaffold_7G00210320
rosa_rugosa	Rorug04G0248600
rosa_samantha	Rh1CG146700 Rh1CG169800 Rh3AG217500 Rh3DG326500 Rh4AG304900 Rh4BG312100 Rh4CG328400 Rh4DG308700 Rh5AG537300 Rh6BG131200 Rh6DG116800
rosa_wichuraiana	Rw1G009740 Rw4G026500 Rw5G039480 Rw6G009530 Rw6G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	426
AccII	CGCG	1 cut(s)	78
AclWI	GGATC	1 cut(s)	311
AcoI	YGGCCR	1 cut(s)	441
AcsI	RAATTY	1 cut(s)	18
AgsI	TTSAA	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	4 cut(s)	71, 176, 296, 374
AluI	AGCT	4 cut(s)	71, 176, 296, 374
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	1 cut(s)	185
AlwI	GGATC	1 cut(s)	311
AoxI	GGCC	1 cut(s)	441
ApoI	RAATTY	1 cut(s)	18
Asp700I	GAANNNNTTC	1 cut(s)	228
AspLEI	GCGC	2 cut(s)	78, 391
BalI	TGGCCA	1 cut(s)	443
BanII	GRGCYC	1 cut(s)	73
Bbv12I	GWGCWC	1 cut(s)	73
BccI	CCATC	1 cut(s)	410
BceAI	ACGGC	1 cut(s)	196
BciT130I	CCWGG	1 cut(s)	32
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	1 cut(s)	297
BlpI	GCTNAGC	1 cut(s)	72
Bme1390I	CCNGG	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	32
BpmI	CTGGAG	1 cut(s)	209
Bpu1102I	GCTNAGC	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	32
BseGI	GGATG	3 cut(s)	285, 421, 462
BseMII	CTCAG	2 cut(s)	86, 207
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	443
BsiHKAI	GWGCWC	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	185
BsmI	GAATGC	2 cut(s)	46, 172
BsnI	GGCC	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp143I	GATC	4 cut(s)	3, 299, 316, 376
Bsp1720I	GCTNAGC	1 cut(s)	72
BspANI	GGCC	1 cut(s)	443
BspCNI	CTCAG	2 cut(s)	85, 208
BspFNI	CGCG	1 cut(s)	78
BspPI	GGATC	1 cut(s)	311
BssMI	GATC	4 cut(s)	3, 299, 316, 376
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	94
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	4 cut(s)	51, 72, 216, 340
BstF5I	GGATG	3 cut(s)	285, 421, 462
BstFNI	CGCG	1 cut(s)	78
BstHHI	GCGC	2 cut(s)	78, 391
BstKTI	GATC	4 cut(s)	6, 302, 319, 379
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	4 cut(s)	3, 299, 316, 376
BstMWI	GCNNNNNNNGC	2 cut(s)	52, 82
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	30
BstUI	CGCG	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	443
BtsCI	GGATG	3 cut(s)	285, 421, 462
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	1 cut(s)	237
CfoI	GCGC	2 cut(s)	78, 391
CviAII	CATG	1 cut(s)	152
CviJI	RGCY	8 cut(s)	71, 176, 211, 235, 296, 351, 374, 443
CviKI_1	RGCY	8 cut(s)	71, 176, 211, 235, 296, 351, 374, 443
DdeI	CTNAG	4 cut(s)	51, 72, 216, 340
DpnI	GATC	4 cut(s)	5, 301, 318, 378
DpnII	GATC	4 cut(s)	3, 299, 316, 376
EaeI	YGGCCR	1 cut(s)	441
Ecl136II	GAGCTC	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	73
Eco53kI	GAGCTC	1 cut(s)	71
EcoICRI	GAGCTC	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	30
EcoT38I	GRGCYC	1 cut(s)	73
FaeI	CATG	1 cut(s)	155
FaiI	YATR	6 cut(s)	153, 315, 327, 426, 440, 486
FatI	CATG	1 cut(s)	151
FbaI	TGATCA	1 cut(s)	3
FokI	GGATG	3 cut(s)	292, 428, 449
FriOI	GRGCYC	1 cut(s)	73
FspBI	CTAG	1 cut(s)	297
GlaI	GCGC	2 cut(s)	77, 390
GsuI	CTGGAG	1 cut(s)	209
HaeIII	GGCC	1 cut(s)	443
HhaI	GCGC	2 cut(s)	78, 391
Hin1II	CATG	1 cut(s)	155
Hin6I	GCGC	2 cut(s)	76, 389
HinP1I	GCGC	2 cut(s)	76, 389
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	2 cut(s)	131, 193
Hpy166II	GTNNAC	2 cut(s)	271, 356
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	4 cut(s)	7, 158, 188, 277
Hpy8I	GTNNAC	2 cut(s)	271, 356
HpyAV	CCTTC	2 cut(s)	92, 341
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4V	TGCA	3 cut(s)	39, 46, 239
HpyF10VI	GCNNNNNNNGC	2 cut(s)	52, 82
HpyF3I	CTNAG	4 cut(s)	51, 72, 216, 340
Hsp92II	CATG	1 cut(s)	155
HspAI	GCGC	2 cut(s)	76, 389
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 299, 316, 376
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	8 cut(s)	17, 44, 120, 173, 249, 262, 279, 333
MaeI	CTAG	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	487
MalI	GATC	4 cut(s)	5, 301, 318, 378
MboI	GATC	4 cut(s)	3, 299, 316, 376
MboII	GAAGA	1 cut(s)	462
MhlI	GDGCHC	1 cut(s)	73
MlsI	TGGCCA	1 cut(s)	443
MluCI	AATT	4 cut(s)	18, 228, 261, 400
MluNI	TGGCCA	1 cut(s)	443
MlyI	GAGTC	2 cut(s)	125, 187
MnlI	CCTC	5 cut(s)	100, 104, 241, 284, 476
Mox20I	TGGCCA	1 cut(s)	443
MroXI	GAANNNNTTC	1 cut(s)	228
MscI	TGGCCA	1 cut(s)	443
Msp20I	TGGCCA	1 cut(s)	443
MspR9I	CCNGG	1 cut(s)	32
Mva1269I	GAATGC	2 cut(s)	46, 172
MvaI	CCWGG	1 cut(s)	32
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	52, 82
NdeII	GATC	4 cut(s)	3, 299, 316, 376
NlaIII	CATG	1 cut(s)	155
NmuCI	GTSAC	1 cut(s)	487
PctI	GAATGC	2 cut(s)	46, 172
PdmI	GAANNNNTTC	1 cut(s)	228
PfoI	TCCNGGA	1 cut(s)	30
PleI	GAGTC	2 cut(s)	125, 187
PpsI	GAGTC	2 cut(s)	125, 187
PsiI	TTATAA	1 cut(s)	426
Psp124BI	GAGCTC	1 cut(s)	73
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
SacI	GAGCTC	1 cut(s)	73
Sau3AI	GATC	4 cut(s)	3, 299, 316, 376
SchI	GAGTC	2 cut(s)	125, 187
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	1 cut(s)	73
SetI	ASST	6 cut(s)	73, 178, 276, 298, 333, 376
SmlI	CTYRAG	1 cut(s)	291
SmoI	CTYRAG	1 cut(s)	291
Sse9I	AATT	4 cut(s)	18, 228, 261, 400
SspMI	CTAG	1 cut(s)	297
SstI	GAGCTC	1 cut(s)	73
StyD4I	CCNGG	1 cut(s)	30
TaaI	ACNGT	1 cut(s)	94
TasI	AATT	4 cut(s)	18, 228, 261, 400
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	1 cut(s)	487
Tsp45I	GTSAC	1 cut(s)	487
TspDTI	ATGAA	2 cut(s)	140, 296
TspRI	CASTG	1 cut(s)	97
XapI	RAATTY	1 cut(s)	18
XmnI	GAANNNNTTC	1 cut(s)	228
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.