Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002364

Physical Location & Seq

Genomic Coordinates Forward (+)

54099440 .. 54101301

Gene Structure 1862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00372730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTTGGCCGCTCTACGCTCCCGATCGTCGTCCTCACAGCTTCTTCAACAATGGAGGCTAGGGTTTCCATCTCTGCACCAGGCCTTCTCCTCCTCCGCCAAGGAAGGCCTGCTTGATCTCCAGGAGGTCGAGACGGTTCTCAGCGACGTCAAGGCCGACGACGTCAAGGTCATACCGGCGAACAAGCACTGCGAGTGGGCCGATTTCATGGTCCTCGCCACCGGAAGGTCCACCTGGCACGTCAAGAACATCGCCCAAGCCCTAATTTACAAGTCTAAGCAAAAGCAGAAAGGAGCTCAGCGCTTGGTGCTTCCCACTGTTGAAGGGCAGGAGGGAGGAAAGTGGATTGTCATTGACTCTGGGAAAGTGATAGTTCATGCTCTTGATGAGAATGCTAGAGCTTACTACAATCTGGAGACTCTTTGGACAACAAAGCCATCTGAGAAAGAACCAATTCAGGATTTGGAAAAGGCTTTTGTGAAGGTTCGTCCTAAGAACAACTCCAAGAGGAAACCAGCACAGAAAAGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

177

Amino Acids

19.88

Weight (kDa)

9.59

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsfS	PF02410	42 - 142	2.1e-25	Ribosomal silencing factor during starvation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67620
fragaria_vesca	FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330
malus_domestica	MD13G1112100.v1.1 MD16G1111700.v1.1
prunus_persica	Prupe.1G233300_v2.0.a1
pyrus_communis	pycom13g09750 pycom16g09470
rosa_chinensis	RchiOBHm_Chr1g0343341 RchiOBHm_Chr1g0366581 RchiOBHm_Chr3g0456071 RchiOBHm_Chr4g0431131 RchiOBHm_Chr7g0183971 RchiOBHm_Chr7g0198741
rosa_laevigata	RLG00000006921
rosa_multiflora	Rmu_sc0005258.1_g000002 Rmu_sc0014629.1_g000007 Rmu_sc0023228.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015160 Rroxscaffold_5G00372730 Rroxscaffold_7G00210320
rosa_rugosa	Rorug04G0248600
rosa_samantha	Rh1CG146700 Rh1CG169800 Rh3AG217500 Rh3DG326500 Rh4AG304900 Rh4BG312100 Rh4CG328400 Rh4DG308700 Rh5AG537300 Rh6BG131200 Rh6DG116800
rosa_wichuraiana	Rw1G009740 Rw4G026500 Rw5G039480 Rw6G009530 Rw6G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	167
AatII	GACGTC	2 cut(s)	150, 165
AccBSI	CCGCTC	1 cut(s)	11
AciI	CCGC	2 cut(s)	9, 96
AcoI	YGGCCR	1 cut(s)	6
AcyI	GRCGYC	2 cut(s)	147, 162
AfeI	AGCGCT	1 cut(s)	302
AfiI	CCNNNNNNNGG	1 cut(s)	225
AgsI	TTSAA	2 cut(s)	47, 323
AjiI	CACGTC	1 cut(s)	241
AjnI	CCWGG	3 cut(s)	78, 120, 233
AluBI	AGCT	3 cut(s)	40, 296, 401
AluI	AGCT	3 cut(s)	40, 296, 401
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	2 cut(s)	125, 410
Aor51HI	AGCGCT	1 cut(s)	302
AoxI	GGCC	5 cut(s)	6, 81, 106, 153, 198
Asp700I	GAANNNNTTC	1 cut(s)	453
AspLEI	GCGC	1 cut(s)	303
AspS9I	GGNCC	3 cut(s)	198, 211, 228
AvaII	GGWCC	2 cut(s)	211, 228
BanII	GRGCYC	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	298
BccI	CCATC	2 cut(s)	76, 445
BciT130I	CCWGG	3 cut(s)	80, 122, 235
BcoDI	GTCTC	2 cut(s)	125, 410
BfaI	CTAG	2 cut(s)	59, 396
BfoI	RGCGCY	1 cut(s)	304
BisI	GCNGC	1 cut(s)	9
BlpI	GCTNAGC	1 cut(s)	297
BlsI	GCNGC	1 cut(s)	10
Bme1390I	CCNGG	3 cut(s)	80, 122, 235
Bme18I	GGWCC	2 cut(s)	211, 228
BmgBI	CACGTC	1 cut(s)	241
BmgT120I	GGNCC	3 cut(s)	198, 211, 228
BmrFI	CCNGG	3 cut(s)	80, 122, 235
BpmI	CTGGAG	2 cut(s)	104, 434
Bpu1102I	GCTNAGC	1 cut(s)	297
BsaHI	GRCGYC	2 cut(s)	147, 162
BsaJI	CCNNGG	1 cut(s)	99
BsaWI	WCCGGW	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse118I	RCCGGY	1 cut(s)	175
BseBI	CCWGG	3 cut(s)	80, 122, 235
BseDI	CCNNGG	1 cut(s)	99
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseMII	CTCAG	3 cut(s)	154, 311, 432
BseRI	GAGGAG	2 cut(s)	79, 82
BsgI	GTGCAG	1 cut(s)	59
Bsh1285I	CGRYCG	1 cut(s)	26
BshFI	GGCC	5 cut(s)	8, 83, 108, 155, 200
BsiEI	CGRYCG	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	298
BsiSI	CCGG	2 cut(s)	176, 222
BslI	CCNNNNNNNGG	1 cut(s)	225
BsmAI	GTCTC	2 cut(s)	125, 410
BsmBI	CGTCTC	1 cut(s)	125
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	5 cut(s)	8, 83, 108, 155, 200
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	2 cut(s)	23, 115
Bsp1720I	GCTNAGC	1 cut(s)	297
BspACI	CCGC	2 cut(s)	9, 96
BspANI	GGCC	5 cut(s)	8, 83, 108, 155, 200
BspCNI	CTCAG	3 cut(s)	153, 310, 433
BsrBI	CCGCTC	1 cut(s)	11
BsrFI	RCCGGY	1 cut(s)	175
BssAI	RCCGGY	1 cut(s)	175
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	2 cut(s)	23, 115
BssNI	GRCGYC	2 cut(s)	147, 162
BssT1I	CCWWGG	1 cut(s)	99
Bst2UI	CCWGG	3 cut(s)	80, 122, 235
Bst4CI	ACNGT	2 cut(s)	136, 319
BstACI	GRCGYC	2 cut(s)	147, 162
BstC8I	GCNNGC	1 cut(s)	110
BstDEI	CTNAG	5 cut(s)	140, 276, 297, 441, 492
BstH2I	RGCGCY	1 cut(s)	304
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	2 cut(s)	26, 118
BstMAI	GTCTC	2 cut(s)	125, 410
BstMBI	GATC	2 cut(s)	23, 115
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	1 cut(s)	307
BstNI	CCWGG	3 cut(s)	80, 122, 235
BstSCI	CCNGG	3 cut(s)	78, 120, 233
BsuRI	GGCC	5 cut(s)	8, 83, 108, 155, 200
BtgZI	GCGATG	1 cut(s)	235
BtrI	CACGTC	1 cut(s)	241
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	2 cut(s)	187, 315
Cac8I	GCNNGC	1 cut(s)	110
CfoI	GCGC	1 cut(s)	303
Cfr10I	RCCGGY	1 cut(s)	175
Cfr13I	GGNCC	3 cut(s)	198, 211, 228
CviAII	CATG	2 cut(s)	208, 377
DdeI	CTNAG	5 cut(s)	140, 276, 297, 441, 492
DpnI	GATC	2 cut(s)	25, 117
DpnII	GATC	2 cut(s)	23, 115
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
EaeI	YGGCCR	1 cut(s)	6
EciI	GGCGGA	1 cut(s)	85
Ecl136II	GAGCTC	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	99
Eco147I	AGGCCT	2 cut(s)	83, 108
Eco24I	GRGCYC	1 cut(s)	298
Eco47I	GGWCC	2 cut(s)	211, 228
Eco47III	AGCGCT	1 cut(s)	302
Eco53kI	GAGCTC	1 cut(s)	296
EcoICRI	GAGCTC	1 cut(s)	296
EcoRII	CCWGG	3 cut(s)	78, 120, 233
EcoT14I	CCWWGG	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	99
Esp3I	CGTCTC	1 cut(s)	125
FaeI	CATG	2 cut(s)	211, 380
FaiI	YATR	3 cut(s)	173, 209, 378
FalI	AAGNNNNNCTT	2 cut(s)	96, 128
FatI	CATG	2 cut(s)	207, 376
Fnu4HI	GCNGC	1 cut(s)	9
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	1 cut(s)	9
FspBI	CTAG	2 cut(s)	59, 396
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	1 cut(s)	9
GsuI	CTGGAG	2 cut(s)	104, 434
HaeII	RGCGCY	1 cut(s)	304
HaeIII	GGCC	5 cut(s)	8, 83, 108, 155, 200
HapII	CCGG	2 cut(s)	176, 222
HhaI	GCGC	1 cut(s)	303
Hin1I	GRCGYC	2 cut(s)	147, 162
Hin1II	CATG	2 cut(s)	211, 380
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HinfI	GANTC	2 cut(s)	356, 418
HpaII	CCGG	2 cut(s)	176, 222
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188I	TCNGA	1 cut(s)	442
Hpy188III	TCNNGA	6 cut(s)	21, 130, 244, 383, 413, 458
Hpy8I	GTNNAC	1 cut(s)	231
Hpy99I	CGWCG	4 cut(s)	31, 149, 161, 164
HpyAV	CCTTC	5 cut(s)	94, 98, 219, 317, 475
HpyCH4III	ACNGT	2 cut(s)	136, 319
HpyCH4IV	ACGT	3 cut(s)	147, 162, 240
HpyCH4V	TGCA	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	1 cut(s)	307
HpyF3I	CTNAG	5 cut(s)	140, 276, 297, 441, 492
HpySE526I	ACGT	3 cut(s)	147, 162, 240
Hsp92I	GRCGYC	2 cut(s)	147, 162
Hsp92II	CATG	2 cut(s)	211, 380
HspAI	GCGC	1 cut(s)	301
Kzo9I	GATC	2 cut(s)	23, 115
LmnI	GCTCC	2 cut(s)	23, 293
MaeI	CTAG	2 cut(s)	59, 396
MaeII	ACGT	3 cut(s)	147, 162, 240
MalI	GATC	2 cut(s)	25, 117
MbiI	CCGCTC	1 cut(s)	11
MboI	GATC	2 cut(s)	23, 115
MboII	GAAGA	1 cut(s)	35
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	2 cut(s)	264, 453
MlyI	GAGTC	2 cut(s)	350, 412
MnlI	CCTC	9 cut(s)	43, 48, 100, 103, 118, 224, 325, 329, 501
MroXI	GAANNNNTTC	1 cut(s)	453
MseI	TTAA	1 cut(s)	532
MspI	CCGG	2 cut(s)	176, 222
MspR9I	CCNGG	3 cut(s)	80, 122, 235
Mva1269I	GAATGC	1 cut(s)	397
MvaI	CCWGG	3 cut(s)	80, 122, 235
MwoI	GCNNNNNNNGC	1 cut(s)	307
NdeII	GATC	2 cut(s)	23, 115
NlaIII	CATG	2 cut(s)	211, 380
PceI	AGGCCT	2 cut(s)	83, 108
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PctI	GAATGC	1 cut(s)	397
PdmI	GAANNNNTTC	1 cut(s)	453
PflFI	GACNNNGTC	1 cut(s)	161
PfoI	TCCNGGA	1 cut(s)	120
PkrI	GCNGC	1 cut(s)	10
Ple19I	CGATCG	1 cut(s)	26
PleI	GAGTC	2 cut(s)	350, 412
PpsI	GAGTC	2 cut(s)	350, 412
Psp124BI	GAGCTC	1 cut(s)	298
Psp6I	CCWGG	3 cut(s)	78, 120, 233
PspGI	CCWGG	3 cut(s)	78, 120, 233
PspPI	GGNCC	3 cut(s)	198, 211, 228
PsyI	GACNNNGTC	1 cut(s)	161
PvuI	CGATCG	1 cut(s)	26
SacI	GAGCTC	1 cut(s)	298
SaqAI	TTAA	1 cut(s)	532
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	2 cut(s)	23, 115
Sau96I	GGNCC	3 cut(s)	198, 211, 228
SchI	GAGTC	2 cut(s)	350, 412
ScrFI	CCNGG	3 cut(s)	80, 122, 235
SduI	GDGCHC	1 cut(s)	298
SinI	GGWCC	2 cut(s)	211, 228
Sse9I	AATT	2 cut(s)	264, 453
SseBI	AGGCCT	2 cut(s)	83, 108
SsiI	CCGC	2 cut(s)	9, 96
SspMI	CTAG	2 cut(s)	59, 396
SstI	GAGCTC	1 cut(s)	298
StuI	AGGCCT	2 cut(s)	83, 108
StyD4I	CCNGG	3 cut(s)	78, 120, 233
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	2 cut(s)	136, 319
TaiI	ACGT	3 cut(s)	150, 165, 243
TaqI	TCGA	1 cut(s)	129
TasI	AATT	2 cut(s)	264, 453
TauI	GCSGC	1 cut(s)	11
Tru1I	TTAA	1 cut(s)	532
Tru9I	TTAA	1 cut(s)	532
TscAI	CASTG	2 cut(s)	194, 322
TspDTI	ATGAA	2 cut(s)	196, 365
TspRI	CASTG	2 cut(s)	194, 322
Tth111I	GACNNNGTC	1 cut(s)	161
VpaK11BI	GGWCC	2 cut(s)	211, 228
XmnI	GAANNNNTTC	1 cut(s)	453
XspI	CTAG	2 cut(s)	59, 396
ZraI	GACGTC	2 cut(s)	148, 163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.