Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002364

Physical Location & Seq

Genomic Coordinates Reverse (-)

15460068 .. 15484251

Gene Structure 24184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG116800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGTTGCTGAAATTAGTAGAGTACTACGACCTGGTGGGGTGTTTGTTGCAACAACTTATATACTTGACGGTACTTTTTCTTTTGTCCCATTTTTTAGGGAAGGTACCAAGTCTAAGCAAAAGCAGAAAGGAGCTCAGCGCGTGGTGCTTCCCACTGTTGAAGGGCAAGAGGGAGGCAAGTGGATTGTCATTGACTCTGGGAAAGTGATAGTTCATGCTCTTGATGAGAATGCTAAAGCTTACTACAATCTGGAGACTCTTTGGACAACAAAGCCGTCTGAGAAAGTACCAATTCAGCCTGCATTTTTGGAGGATAAATCACTAATTCCTGTCAACCTCTGGATGAACAATGCTCAAGCTAGATCAAGCACTCACTATGATCCACACCATAACCTTCTCTGCTTAGTTTCTGGCTGTAAACAAGGAAGCAGATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

145

Amino Acids

16.12

Weight (kDa)

9.14

Isoelectric Point (pI)

53.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsfS	PF02410	40 - 88	7.5e-11	Ribosomal silencing factor during starvation
Cupin_8	PF13621	87 - 141	4.6e-10	Cupin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67620
fragaria_vesca	FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330
malus_domestica	MD13G1112100.v1.1 MD16G1111700.v1.1
prunus_persica	Prupe.1G233300_v2.0.a1
pyrus_communis	pycom13g09750 pycom16g09470
rosa_chinensis	RchiOBHm_Chr1g0343341 RchiOBHm_Chr1g0366581 RchiOBHm_Chr3g0456071 RchiOBHm_Chr4g0431131 RchiOBHm_Chr7g0183971 RchiOBHm_Chr7g0198741
rosa_laevigata	RLG00000006921
rosa_multiflora	Rmu_sc0005258.1_g000002 Rmu_sc0014629.1_g000007 Rmu_sc0023228.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015160 Rroxscaffold_5G00372730 Rroxscaffold_7G00210320
rosa_rugosa	Rorug04G0248600
rosa_samantha	Rh1CG146700 Rh1CG169800 Rh3AG217500 Rh3DG326500 Rh4AG304900 Rh4BG312100 Rh4CG328400 Rh4DG308700 Rh5AG537300 Rh6BG131200 Rh6DG116800
rosa_wichuraiana	Rw1G009740 Rw4G026500 Rw5G039480 Rw6G009530 Rw6G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	104
AccB1I	GGYRCC	1 cut(s)	104
AccII	CGCG	1 cut(s)	141
AclWI	GGATC	2 cut(s)	374, 426
AfaI	GTAC	4 cut(s)	24, 73, 106, 288
AgsI	TTSAA	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	3 cut(s)	134, 239, 359
AluI	AGCT	3 cut(s)	134, 239, 359
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	2 cut(s)	374, 426
AlwNI	CAGNNNCTG	1 cut(s)	435
Asp718I	GGTACC	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	141
BanI	GGYRCC	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	136
BceAI	ACGGC	1 cut(s)	259
BciT130I	CCWGG	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	248
BfaI	CTAG	1 cut(s)	360
BlpI	GCTNAGC	1 cut(s)	135
BmcAI	AGTACT	1 cut(s)	24
Bme1390I	CCNGG	1 cut(s)	33
BmiI	GGNNCC	1 cut(s)	106
BmrFI	CCNGG	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	272
Bpu1102I	GCTNAGC	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	348
BseMII	CTCAG	2 cut(s)	149, 270
Bsh1236I	CGCG	1 cut(s)	141
BshNI	GGYRCC	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	136
BslFI	GGGAC	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	71
BsmI	GAATGC	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp143I	GATC	3 cut(s)	362, 379, 431
Bsp1720I	GCTNAGC	1 cut(s)	135
BspCNI	CTCAG	2 cut(s)	148, 271
BspFNI	CGCG	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	106
BspPI	GGATC	2 cut(s)	374, 426
BspT107I	GGYRCC	1 cut(s)	104
BssMI	GATC	3 cut(s)	362, 379, 431
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	2 cut(s)	71, 157
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	4 cut(s)	114, 135, 279, 403
BstF5I	GGATG	1 cut(s)	348
BstFNI	CGCG	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	3 cut(s)	365, 382, 434
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	3 cut(s)	362, 379, 431
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	31
BstUI	CGCG	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	431
BstYI	RGATCY	1 cut(s)	431
BtsCI	GGATG	1 cut(s)	348
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	1 cut(s)	300
CaiI	CAGNNNCTG	1 cut(s)	435
CfoI	GCGC	1 cut(s)	141
CsiI	ACCWGGT	1 cut(s)	31
Csp6I	GTAC	4 cut(s)	23, 72, 105, 287
CviAII	CATG	1 cut(s)	215
CviJI	RGCY	6 cut(s)	134, 239, 274, 298, 359, 414
CviKI_1	RGCY	6 cut(s)	134, 239, 274, 298, 359, 414
CviQI	GTAC	4 cut(s)	23, 72, 105, 287
DdeI	CTNAG	4 cut(s)	114, 135, 279, 403
DpnI	GATC	3 cut(s)	364, 381, 433
DpnII	GATC	3 cut(s)	362, 379, 431
Ecl136II	GAGCTC	1 cut(s)	134
Eco24I	GRGCYC	1 cut(s)	136
Eco53kI	GAGCTC	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	136
FaeI	CATG	1 cut(s)	218
FaiI	YATR	5 cut(s)	60, 62, 216, 378, 390
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	1 cut(s)	214
FokI	GGATG	1 cut(s)	355
FriOI	GRGCYC	1 cut(s)	136
FspBI	CTAG	1 cut(s)	360
GlaI	GCGC	1 cut(s)	140
GsuI	CTGGAG	1 cut(s)	272
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	218
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HindIII	AAGCTT	1 cut(s)	237
HinfI	GANTC	2 cut(s)	194, 256
Hpy166II	GTNNAC	2 cut(s)	334, 419
Hpy188I	TCNGA	1 cut(s)	280
Hpy188III	TCNNGA	4 cut(s)	221, 251, 340, 435
Hpy8I	GTNNAC	2 cut(s)	334, 419
HpyAV	CCTTC	3 cut(s)	95, 155, 404
HpyCH4III	ACNGT	2 cut(s)	71, 157
HpyCH4V	TGCA	2 cut(s)	50, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HpyF3I	CTNAG	4 cut(s)	114, 135, 279, 403
Hsp92II	CATG	1 cut(s)	218
HspAI	GCGC	1 cut(s)	139
KpnI	GGTACC	1 cut(s)	108
Kzo9I	GATC	3 cut(s)	362, 379, 431
LmnI	GCTCC	1 cut(s)	131
LpnPI	CCDG	8 cut(s)	18, 45, 183, 236, 312, 325, 342, 396
MabI	ACCWGGT	1 cut(s)	31
MaeI	CTAG	1 cut(s)	360
MalI	GATC	3 cut(s)	364, 381, 433
MboI	GATC	3 cut(s)	362, 379, 431
MflI	RGATCY	1 cut(s)	431
MhlI	GDGCHC	1 cut(s)	136
MluCI	AATT	3 cut(s)	12, 291, 324
MlyI	GAGTC	2 cut(s)	188, 250
MnlI	CCTC	4 cut(s)	163, 167, 304, 347
MspR9I	CCNGG	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	235
MvaI	CCWGG	1 cut(s)	33
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	145
NdeII	GATC	3 cut(s)	362, 379, 431
NlaIII	CATG	1 cut(s)	218
NlaIV	GGNNCC	1 cut(s)	106
PctI	GAATGC	1 cut(s)	235
PleI	GAGTC	2 cut(s)	188, 250
PpsI	GAGTC	2 cut(s)	188, 250
Psp124BI	GAGCTC	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	1 cut(s)	106
PstNI	CAGNNNCTG	1 cut(s)	435
PsuI	RGATCY	1 cut(s)	431
RsaI	GTAC	4 cut(s)	24, 73, 106, 288
RsaNI	GTAC	4 cut(s)	23, 72, 105, 287
SacI	GAGCTC	1 cut(s)	136
Sau3AI	GATC	3 cut(s)	362, 379, 431
ScaI	AGTACT	1 cut(s)	24
SchI	GAGTC	2 cut(s)	188, 250
ScrFI	CCNGG	1 cut(s)	33
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	7 cut(s)	34, 106, 136, 241, 339, 361, 396
SexAI	ACCWGGT	1 cut(s)	31
SmlI	CTYRAG	1 cut(s)	354
SmoI	CTYRAG	1 cut(s)	354
Sse9I	AATT	3 cut(s)	12, 291, 324
SspMI	CTAG	1 cut(s)	360
SstI	GAGCTC	1 cut(s)	136
StyD4I	CCNGG	1 cut(s)	31
TaaI	ACNGT	2 cut(s)	71, 157
TasI	AATT	3 cut(s)	12, 291, 324
TatI	WGTACW	1 cut(s)	22
TscAI	CASTG	1 cut(s)	160
TspDTI	ATGAA	2 cut(s)	203, 359
TspRI	CASTG	1 cut(s)	160
XspI	CTAG	1 cut(s)	360
ZrmI	AGTACT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.