Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002364

Physical Location & Seq

Genomic Coordinates Forward (+)

58925128 .. 58927698

Gene Structure 2571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG328400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTTGGCCGCTCTACGCTCCCGATCGTCGTCCTCACTGCTTCTTCAACAATGGAGGCTAGGGTTTCCATCTCTGCACCAAGCCTTCTCCTCCTCCACCGCCGCCAAGGAAGGCCTGCTTGATCTCCAGGAGGTCGAGACGGTTCTCAGCGACGTCAAGGCCGACGACGTCAAGGTCATACCGGCGAACAAGCACTGCGAGTGGGCCGATTTCATGGTCCTCGCCACCGGAAGGTCCACCTGGCACGTCAAGAACATCGCCCAAGCCCTAATTTACAAGTCTAAGCAAAAGCAGAAAGGAGCTCAGCGCTTGGTGGTTCCCACTGTTGAAGGACAAGAGGGAGGAAAGTGGATTGTCATCGACTCTGGTTTGTGCTCTGCTCTTTGGTCTATCATCATCGTTGTTGGTGCTCTAAGAGCAATGTTGGTTTTAAATTATGCACAACTTTGCATAGACCCACATCAGAATACAAGTTCATATATTCACATGGCAGCAATCTTTTCTGGCCATCGATGTTGTGACTTTGAGACGGCATTAAATAATAGGATACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

184

Amino Acids

20.32

Weight (kDa)

8.63

Isoelectric Point (pI)

42.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsfS	PF02410	44 - 123	4.5e-14	Ribosomal silencing factor during starvation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67620
fragaria_vesca	FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330
malus_domestica	MD13G1112100.v1.1 MD16G1111700.v1.1
prunus_persica	Prupe.1G233300_v2.0.a1
pyrus_communis	pycom13g09750 pycom16g09470
rosa_chinensis	RchiOBHm_Chr1g0343341 RchiOBHm_Chr1g0366581 RchiOBHm_Chr3g0456071 RchiOBHm_Chr4g0431131 RchiOBHm_Chr7g0183971 RchiOBHm_Chr7g0198741
rosa_laevigata	RLG00000006921
rosa_multiflora	Rmu_sc0005258.1_g000002 Rmu_sc0014629.1_g000007 Rmu_sc0023228.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015160 Rroxscaffold_5G00372730 Rroxscaffold_7G00210320
rosa_rugosa	Rorug04G0248600
rosa_samantha	Rh1CG146700 Rh1CG169800 Rh3AG217500 Rh3DG326500 Rh4AG304900 Rh4BG312100 Rh4CG328400 Rh4DG308700 Rh5AG537300 Rh6BG131200 Rh6DG116800
rosa_wichuraiana	Rw1G009740 Rw4G026500 Rw5G039480 Rw6G009530 Rw6G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	173
AatII	GACGTC	2 cut(s)	156, 171
AccBSI	CCGCTC	1 cut(s)	11
AciI	CCGC	3 cut(s)	9, 99, 102
AcoI	YGGCCR	2 cut(s)	6, 505
AcyI	GRCGYC	2 cut(s)	153, 168
AfeI	AGCGCT	1 cut(s)	308
AfiI	CCNNNNNNNGG	1 cut(s)	231
AgsI	TTSAA	2 cut(s)	47, 329
AjiI	CACGTC	1 cut(s)	247
AjnI	CCWGG	2 cut(s)	126, 239
AluBI	AGCT	1 cut(s)	302
AluI	AGCT	1 cut(s)	302
Alw21I	GWGCWC	3 cut(s)	304, 377, 412
Alw26I	GTCTC	2 cut(s)	131, 521
Aor51HI	AGCGCT	1 cut(s)	308
AoxI	GGCC	5 cut(s)	6, 112, 159, 204, 505
ApeKI	GCWGC	1 cut(s)	491
AspLEI	GCGC	1 cut(s)	309
AspS9I	GGNCC	3 cut(s)	204, 217, 234
AvaII	GGWCC	2 cut(s)	217, 234
BalI	TGGCCA	1 cut(s)	507
BanII	GRGCYC	1 cut(s)	304
Bbv12I	GWGCWC	3 cut(s)	304, 377, 412
BbvI	GCAGC	1 cut(s)	503
BccI	CCATC	2 cut(s)	76, 516
BceAI	ACGGC	1 cut(s)	546
BciT130I	CCWGG	2 cut(s)	128, 241
BciVI	GTATCC	1 cut(s)	540
BcoDI	GTCTC	2 cut(s)	131, 521
BfaI	CTAG	1 cut(s)	59
BfoI	RGCGCY	1 cut(s)	310
BfuI	GTATCC	1 cut(s)	540
BisI	GCNGC	3 cut(s)	9, 102, 492
BlpI	GCTNAGC	1 cut(s)	303
BlsI	GCNGC	3 cut(s)	10, 103, 493
Bme1390I	CCNGG	2 cut(s)	128, 241
Bme18I	GGWCC	2 cut(s)	217, 234
BmgBI	CACGTC	1 cut(s)	247
BmgT120I	GGNCC	3 cut(s)	204, 217, 234
BmiI	GGNNCC	1 cut(s)	318
BmrFI	CCNGG	2 cut(s)	128, 241
BpmI	CTGGAG	1 cut(s)	110
Bpu1102I	GCTNAGC	1 cut(s)	303
Bsa29I	ATCGAT	1 cut(s)	511
BsaBI	GATNNNNATC	1 cut(s)	356
BsaHI	GRCGYC	2 cut(s)	153, 168
BsaJI	CCNNGG	1 cut(s)	105
BsaWI	WCCGGW	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse118I	RCCGGY	1 cut(s)	181
Bse3DI	GCAATG	1 cut(s)	426
Bse8I	GATNNNNATC	1 cut(s)	356
BseBI	CCWGG	2 cut(s)	128, 241
BseCI	ATCGAT	1 cut(s)	511
BseDI	CCNNGG	1 cut(s)	105
BseJI	GATNNNNATC	1 cut(s)	356
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	2 cut(s)	160, 317
BseRI	GAGGAG	2 cut(s)	79, 82
BseXI	GCAGC	1 cut(s)	503
BsgI	GTGCAG	1 cut(s)	59
Bsh1285I	CGRYCG	1 cut(s)	26
BshFI	GGCC	5 cut(s)	8, 114, 161, 206, 507
BshVI	ATCGAT	1 cut(s)	511
BsiEI	CGRYCG	1 cut(s)	26
BsiHKAI	GWGCWC	3 cut(s)	304, 377, 412
BsiSI	CCGG	2 cut(s)	182, 228
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmAI	GTCTC	2 cut(s)	131, 521
BsmBI	CGTCTC	2 cut(s)	131, 521
BsnI	GGCC	5 cut(s)	8, 114, 161, 206, 507
Bsp1286I	GDGCHC	3 cut(s)	304, 377, 412
Bsp143I	GATC	2 cut(s)	23, 121
Bsp1720I	GCTNAGC	1 cut(s)	303
BspACI	CCGC	3 cut(s)	9, 99, 102
BspANI	GGCC	5 cut(s)	8, 114, 161, 206, 507
BspCNI	CTCAG	2 cut(s)	159, 316
BspDI	ATCGAT	1 cut(s)	511
BspLI	GGNNCC	1 cut(s)	318
BsrBI	CCGCTC	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	426
BsrFI	RCCGGY	1 cut(s)	181
BssAI	RCCGGY	1 cut(s)	181
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	2 cut(s)	23, 121
BssNI	GRCGYC	2 cut(s)	153, 168
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	2 cut(s)	128, 241
Bst4CI	ACNGT	3 cut(s)	142, 325, 552
BstACI	GRCGYC	2 cut(s)	153, 168
BstC8I	GCNNGC	1 cut(s)	116
BstDEI	CTNAG	4 cut(s)	146, 282, 303, 413
BstH2I	RGCGCY	1 cut(s)	310
BstHHI	GCGC	1 cut(s)	309
BstKTI	GATC	2 cut(s)	26, 124
BstMAI	GTCTC	2 cut(s)	131, 521
BstMBI	GATC	2 cut(s)	23, 121
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstNI	CCWGG	2 cut(s)	128, 241
BstSCI	CCNGG	2 cut(s)	126, 239
BstV1I	GCAGC	1 cut(s)	503
Bsu15I	ATCGAT	1 cut(s)	511
BsuI	GTATCC	1 cut(s)	540
BsuRI	GGCC	5 cut(s)	8, 114, 161, 206, 507
BsuTUI	ATCGAT	1 cut(s)	511
BtgZI	GCGATG	1 cut(s)	241
BtrI	CACGTC	1 cut(s)	247
BtsI	GCAGTG	2 cut(s)	35, 193
BtsIMutI	CAGTG	3 cut(s)	35, 193, 321
Cac8I	GCNNGC	1 cut(s)	116
CfoI	GCGC	1 cut(s)	309
Cfr10I	RCCGGY	1 cut(s)	181
Cfr13I	GGNCC	3 cut(s)	204, 217, 234
ClaI	ATCGAT	1 cut(s)	511
CviAII	CATG	2 cut(s)	214, 487
CviJI	RGCY	9 cut(s)	8, 58, 83, 114, 161, 206, 266, 302, 507
CviKI_1	RGCY	9 cut(s)	8, 58, 83, 114, 161, 206, 266, 302, 507
DdeI	CTNAG	4 cut(s)	146, 282, 303, 413
DpnI	GATC	2 cut(s)	25, 123
DpnII	GATC	2 cut(s)	23, 121
DraI	TTTAAA	1 cut(s)	432
DrdI	GACNNNNNNGTC	1 cut(s)	173
DseDI	GACNNNNNNGTC	1 cut(s)	173
EaeI	YGGCCR	2 cut(s)	6, 505
Ecl136II	GAGCTC	1 cut(s)	302
Eco130I	CCWWGG	1 cut(s)	105
Eco147I	AGGCCT	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	304
Eco47I	GGWCC	2 cut(s)	217, 234
Eco47III	AGCGCT	1 cut(s)	308
Eco53kI	GAGCTC	1 cut(s)	302
EcoICRI	GAGCTC	1 cut(s)	302
EcoRII	CCWGG	2 cut(s)	126, 239
EcoT14I	CCWWGG	1 cut(s)	105
EcoT38I	GRGCYC	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	105
Esp3I	CGTCTC	2 cut(s)	131, 521
FaeI	CATG	2 cut(s)	217, 490
FaiI	YATR	7 cut(s)	179, 215, 438, 452, 478, 480, 488
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FatI	CATG	2 cut(s)	213, 486
Fnu4HI	GCNGC	3 cut(s)	9, 102, 492
FriOI	GRGCYC	1 cut(s)	304
Fsp4HI	GCNGC	3 cut(s)	9, 102, 492
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	1 cut(s)	308
GluI	GCNGC	3 cut(s)	9, 102, 492
GsuI	CTGGAG	1 cut(s)	110
HaeII	RGCGCY	1 cut(s)	310
HaeIII	GGCC	5 cut(s)	8, 114, 161, 206, 507
HapII	CCGG	2 cut(s)	182, 228
HhaI	GCGC	1 cut(s)	309
Hin1I	GRCGYC	2 cut(s)	153, 168
Hin1II	CATG	2 cut(s)	217, 490
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HinfI	GANTC	1 cut(s)	362
HpaII	CCGG	2 cut(s)	182, 228
Hpy166II	GTNNAC	1 cut(s)	237
Hpy188I	TCNGA	1 cut(s)	465
Hpy188III	TCNNGA	3 cut(s)	21, 136, 250
Hpy8I	GTNNAC	1 cut(s)	237
Hpy99I	CGWCG	4 cut(s)	31, 155, 167, 170
HpyAV	CCTTC	4 cut(s)	94, 104, 225, 323
HpyCH4III	ACNGT	3 cut(s)	142, 325, 552
HpyCH4IV	ACGT	3 cut(s)	153, 168, 246
HpyCH4V	TGCA	3 cut(s)	76, 440, 450
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpyF3I	CTNAG	4 cut(s)	146, 282, 303, 413
HpySE526I	ACGT	3 cut(s)	153, 168, 246
Hsp92I	GRCGYC	2 cut(s)	153, 168
Hsp92II	CATG	2 cut(s)	217, 490
HspAI	GCGC	1 cut(s)	307
Kzo9I	GATC	2 cut(s)	23, 121
LmnI	GCTCC	2 cut(s)	23, 299
LpnPI	CCDG	9 cut(s)	113, 128, 140, 195, 226, 241, 253, 351, 489
Lsp1109I	GCAGC	1 cut(s)	503
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	3 cut(s)	153, 168, 246
MaeIII	GTNAC	1 cut(s)	518
MalI	GATC	2 cut(s)	25, 123
MbiI	CCGCTC	1 cut(s)	11
MboI	GATC	2 cut(s)	23, 121
MboII	GAAGA	1 cut(s)	35
MhlI	GDGCHC	3 cut(s)	304, 377, 412
MlsI	TGGCCA	1 cut(s)	507
MluCI	AATT	2 cut(s)	270, 433
MluNI	TGGCCA	1 cut(s)	507
MlyI	GAGTC	1 cut(s)	356
MnlI	CCTC	8 cut(s)	43, 48, 100, 103, 124, 230, 331, 335
Mox20I	TGGCCA	1 cut(s)	507
MscI	TGGCCA	1 cut(s)	507
MseI	TTAA	2 cut(s)	431, 536
Msp20I	TGGCCA	1 cut(s)	507
MspI	CCGG	2 cut(s)	182, 228
MspR9I	CCNGG	2 cut(s)	128, 241
MvaI	CCWGG	2 cut(s)	128, 241
MwoI	GCNNNNNNNGC	1 cut(s)	416
NdeII	GATC	2 cut(s)	23, 121
NlaIII	CATG	2 cut(s)	217, 490
NlaIV	GGNNCC	1 cut(s)	318
NmuCI	GTSAC	1 cut(s)	518
PceI	AGGCCT	1 cut(s)	114
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PflFI	GACNNNGTC	1 cut(s)	167
PfoI	TCCNGGA	1 cut(s)	126
PkrI	GCNGC	3 cut(s)	10, 103, 493
Ple19I	CGATCG	1 cut(s)	26
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
Psp124BI	GAGCTC	1 cut(s)	304
Psp6I	CCWGG	2 cut(s)	126, 239
PspGI	CCWGG	2 cut(s)	126, 239
PspN4I	GGNNCC	1 cut(s)	318
PspPI	GGNCC	3 cut(s)	204, 217, 234
PsyI	GACNNNGTC	1 cut(s)	167
PvuI	CGATCG	1 cut(s)	26
SacI	GAGCTC	1 cut(s)	304
SaqAI	TTAA	2 cut(s)	431, 536
SatI	GCNGC	3 cut(s)	9, 102, 492
Sau3AI	GATC	2 cut(s)	23, 121
Sau96I	GGNCC	3 cut(s)	204, 217, 234
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	2 cut(s)	128, 241
SduI	GDGCHC	3 cut(s)	304, 377, 412
SetI	ASST	8 cut(s)	135, 156, 171, 177, 236, 242, 249, 304
SinI	GGWCC	2 cut(s)	217, 234
Sse9I	AATT	2 cut(s)	270, 433
SseBI	AGGCCT	1 cut(s)	114
SsiI	CCGC	3 cut(s)	9, 99, 102
SspMI	CTAG	1 cut(s)	59
SstI	GAGCTC	1 cut(s)	304
StuI	AGGCCT	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	126, 239
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	3 cut(s)	142, 325, 552
TaiI	ACGT	3 cut(s)	156, 171, 249
TaqI	TCGA	3 cut(s)	135, 360, 511
TasI	AATT	2 cut(s)	270, 433
TauI	GCSGC	2 cut(s)	11, 104
Tru1I	TTAA	2 cut(s)	431, 536
Tru9I	TTAA	2 cut(s)	431, 536
TscAI	CASTG	3 cut(s)	42, 200, 328
TseFI	GTSAC	1 cut(s)	518
TseI	GCWGC	1 cut(s)	491
Tsp45I	GTSAC	1 cut(s)	518
TspDTI	ATGAA	2 cut(s)	202, 465
TspRI	CASTG	3 cut(s)	42, 200, 328
Tth111I	GACNNNGTC	1 cut(s)	167
VpaK11BI	GGWCC	2 cut(s)	217, 234
XspI	CTAG	1 cut(s)	59
ZraI	GACGTC	2 cut(s)	154, 169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.