Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002364

Physical Location & Seq

Genomic Coordinates Reverse (-)

20393401 .. 20429971

Gene Structure 36571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG131200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGATTATGGAAGGGGAGATTTGCTGCAATGGTCGTCTGTTGACTTCTGGGAAATGGGTGCCTTTTTCCTGGAACAGTGTGCTTACACTCCAAGATTACTATGTTGCCTTGTTCCCGGCCTTCTCCTCCGCCGCCGCCGCCGCCGCCAAGGAAGGCCTGCTTGATCTCCAGGAGGTCGAGACGGTTCTCAGCGAAGTCAAGGCCGACGACGTCAAGGTCATACCGACGAACAAGCACTGCGAGTGGGCCGATTTCATGGTCCTCGCCACCGGAAGGTCCACCTGGCACGTCAAGAACATCGCCCAAGCCCTAATTTACAAGTCTAAGCAAAAGCAGAAAGGAGCTCAGCGCGTGGTGCTTCCCACTGTTGAAGGGCAAGAGGGAGGCAAGTGGATTGTCATTGACTCTGGGAAAGTGATAGTTCATGCTCTTGATGAGAATGCTAAAGCTTACTACAATCTGGAGACTCTTTGGACAACAAAGCCGTCTGAGAAAGTACCAATTCAGCCTGCATTTTTGGAGGATAAATCACTAATTCCTGTCAACCTCTGGATGAACAATGCTCAAGCTAGATCAAGCACTCACTATGATCCACACCATAACCTTCTCTGCTTAGTTTCTGGCTGTAAACAAGAGAATGGAAGGCAAGGGGAGGGATTATGGAAAATACATCAGATCGGGGGAGCATGTATGGTTCGTGAGAGAGACTGGGGATCACAGGAGCCACAAGCTCAGCCACGTCCCGAGGATGCTCCAACACAGCAGTCCTATTATCCTCACTCTGTTAACTCCCCGAGCTCTTCTCGTCCTTTAACTCCAAGTAGAACCTCTTCTTCTTCCAATTTGAGTTCTAGGGGTAACTCCCTATCACCTGTTTCTCCCACCGAAGCTGCCGGTGTGATTGCTTCTTTGAAGGACAAAAGACAGAGAACTCAGTTGCTTTCTCATGATGTTGAAGCTGTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

322

Amino Acids

35.53

Weight (kDa)

6.76

Isoelectric Point (pI)

54.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsfS	PF02410	58 - 158	1.4e-23	Ribosomal silencing factor during starvation
Cupin_8	PF13621	160 - 211	2.8e-09	Cupin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67620
fragaria_vesca	FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330
malus_domestica	MD13G1112100.v1.1 MD16G1111700.v1.1
prunus_persica	Prupe.1G233300_v2.0.a1
pyrus_communis	pycom13g09750 pycom16g09470
rosa_chinensis	RchiOBHm_Chr1g0343341 RchiOBHm_Chr1g0366581 RchiOBHm_Chr3g0456071 RchiOBHm_Chr4g0431131 RchiOBHm_Chr7g0183971 RchiOBHm_Chr7g0198741
rosa_laevigata	RLG00000006921
rosa_multiflora	Rmu_sc0005258.1_g000002 Rmu_sc0014629.1_g000007 Rmu_sc0023228.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015160 Rroxscaffold_5G00372730 Rroxscaffold_7G00210320
rosa_rugosa	Rorug04G0248600
rosa_samantha	Rh1CG146700 Rh1CG169800 Rh3AG217500 Rh3DG326500 Rh4AG304900 Rh4BG312100 Rh4CG328400 Rh4DG308700 Rh5AG537300 Rh6BG131200 Rh6DG116800
rosa_wichuraiana	Rw1G009740 Rw4G026500 Rw5G039480 Rw6G009530 Rw6G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	215
AatII	GACGTC	1 cut(s)	213
AccB1I	GGYRCC	1 cut(s)	58
AccII	CGCG	1 cut(s)	351
AciI	CCGC	6 cut(s)	129, 132, 135, 138, 141, 144
AclWI	GGATC	2 cut(s)	584, 721
AcyI	GRCGYC	1 cut(s)	210
AfaI	GTAC	1 cut(s)	498
AfiI	CCNNNNNNNGG	1 cut(s)	273
AgsI	TTSAA	3 cut(s)	371, 913, 956
AjiI	CACGTC	2 cut(s)	289, 740
AjnI	CCWGG	3 cut(s)	68, 168, 281
AluBI	AGCT	7 cut(s)	344, 449, 569, 731, 798, 890, 959
AluI	AGCT	7 cut(s)	344, 449, 569, 731, 798, 890, 959
Alw21I	GWGCWC	2 cut(s)	346, 800
Alw26I	GTCTC	3 cut(s)	173, 458, 699
AlwI	GGATC	2 cut(s)	584, 721
Ama87I	CYCGRG	2 cut(s)	743, 793
AoxI	GGCC	4 cut(s)	117, 154, 201, 246
ApeKI	GCWGC	2 cut(s)	24, 890
Asp700I	GAANNNNTTC	1 cut(s)	829
AspLEI	GCGC	1 cut(s)	351
AspS9I	GGNCC	3 cut(s)	246, 259, 276
AsuC2I	CCSGG	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	861
AvaI	CYCGRG	2 cut(s)	743, 793
AvaII	GGWCC	2 cut(s)	259, 276
BanI	GGYRCC	1 cut(s)	58
BanII	GRGCYC	2 cut(s)	346, 800
BarI	GAAGNNNNNNTAC	2 cut(s)	814, 846
Bbv12I	GWGCWC	2 cut(s)	346, 800
BbvI	GCAGC	2 cut(s)	11, 877
BceAI	ACGGC	1 cut(s)	469
BciT130I	CCWGG	3 cut(s)	70, 170, 283
BcnI	CCSGG	1 cut(s)	116
BcoDI	GTCTC	3 cut(s)	173, 458, 699
BfaI	CTAG	2 cut(s)	570, 852
BisI	GCNGC	7 cut(s)	25, 132, 135, 138, 141, 144, 891
BlpI	GCTNAGC	2 cut(s)	345, 732
BlsI	GCNGC	7 cut(s)	26, 133, 136, 139, 142, 145, 892
Bme1390I	CCNGG	4 cut(s)	70, 116, 170, 283
Bme18I	GGWCC	2 cut(s)	259, 276
BmeT110I	CYCGRG	2 cut(s)	743, 793
BmgBI	CACGTC	2 cut(s)	289, 740
BmgT120I	GGNCC	3 cut(s)	246, 259, 276
BmiI	GGNNCC	2 cut(s)	60, 723
BmrFI	CCNGG	4 cut(s)	70, 116, 170, 283
BmrI	ACTGGG	1 cut(s)	718
BmsI	GCATC	1 cut(s)	739
BmuI	ACTGGG	1 cut(s)	718
BplI	GAGNNNNNCTC	2 cut(s)	787, 819
BpmI	CTGGAG	2 cut(s)	152, 482
Bpu1102I	GCTNAGC	2 cut(s)	345, 732
BpuEI	CTTGAG	1 cut(s)	549
BpuMI	CCSGG	1 cut(s)	116
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	147, 744
BsaWI	WCCGGW	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	1 cut(s)	273
Bse118I	RCCGGY	1 cut(s)	893
Bse1I	ACTGG	1 cut(s)	713
Bse3DI	GCAATG	1 cut(s)	34
BseBI	CCWGG	3 cut(s)	70, 170, 283
BseDI	CCNNGG	2 cut(s)	147, 744
BseGI	GGATG	2 cut(s)	558, 754
BseLI	CCNNNNNNNGG	1 cut(s)	273
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	5 cut(s)	202, 359, 480, 746, 947
BseNI	ACTGG	1 cut(s)	713
BseRI	GAGGAG	1 cut(s)	115
BseXI	GCAGC	2 cut(s)	11, 877
Bsh1236I	CGCG	1 cut(s)	351
BshFI	GGCC	4 cut(s)	119, 156, 203, 248
BshNI	GGYRCC	1 cut(s)	58
BsiHKAI	GWGCWC	2 cut(s)	346, 800
BsiHKCI	CYCGRG	2 cut(s)	743, 793
BsiSI	CCGG	3 cut(s)	116, 270, 894
BslFI	GGGAC	1 cut(s)	726
BslI	CCNNNNNNNGG	1 cut(s)	273
BsmAI	GTCTC	3 cut(s)	173, 458, 699
BsmBI	CGTCTC	1 cut(s)	173
BsmFI	GGGAC	1 cut(s)	726
BsmI	GAATGC	1 cut(s)	445
BsnI	GGCC	4 cut(s)	119, 156, 203, 248
BsoBI	CYCGRG	2 cut(s)	743, 793
Bsp1286I	GDGCHC	2 cut(s)	346, 800
Bsp143I	GATC	5 cut(s)	163, 572, 589, 675, 713
Bsp1720I	GCTNAGC	2 cut(s)	345, 732
BspACI	CCGC	6 cut(s)	129, 132, 135, 138, 141, 144
BspANI	GGCC	4 cut(s)	119, 156, 203, 248
BspCNI	CTCAG	5 cut(s)	201, 358, 481, 745, 946
BspFNI	CGCG	1 cut(s)	351
BspHI	TCATGA	1 cut(s)	946
BspLI	GGNNCC	2 cut(s)	60, 723
BspPI	GGATC	2 cut(s)	584, 721
BspQI	GCTCTTC	1 cut(s)	805
BspT107I	GGYRCC	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	34
BsrFI	RCCGGY	1 cut(s)	893
BsrI	ACTGG	1 cut(s)	713
BssAI	RCCGGY	1 cut(s)	893
BssECI	CCNNGG	2 cut(s)	147, 744
BssMI	GATC	5 cut(s)	163, 572, 589, 675, 713
BssNI	GRCGYC	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	3 cut(s)	70, 170, 283
Bst4CI	ACNGT	3 cut(s)	77, 184, 367
Bst6I	CTCTTC	2 cut(s)	805, 835
BstACI	GRCGYC	1 cut(s)	210
BstC8I	GCNNGC	2 cut(s)	158, 510
BstDEI	CTNAG	7 cut(s)	188, 324, 345, 489, 613, 732, 933
BstF5I	GGATG	2 cut(s)	558, 754
BstFNI	CGCG	1 cut(s)	351
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	5 cut(s)	166, 575, 592, 678, 716
BstMAI	GTCTC	3 cut(s)	173, 458, 699
BstMBI	GATC	5 cut(s)	163, 572, 589, 675, 713
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 140, 143, 355
BstNI	CCWGG	3 cut(s)	70, 170, 283
BstNSI	RCATGY	1 cut(s)	690
BstSCI	CCNGG	4 cut(s)	68, 114, 168, 281
BstUI	CGCG	1 cut(s)	351
BstV1I	GCAGC	2 cut(s)	11, 877
BsuRI	GGCC	4 cut(s)	119, 156, 203, 248
BtgZI	GCGATG	1 cut(s)	283
BtrI	CACGTC	2 cut(s)	289, 740
BtsCI	GGATG	2 cut(s)	558, 754
BtsI	GCAGTG	1 cut(s)	235
BtsIMutI	CAGTG	3 cut(s)	82, 235, 363
Cac8I	GCNNGC	2 cut(s)	158, 510
CciI	TCATGA	1 cut(s)	946
CfoI	GCGC	1 cut(s)	351
Cfr10I	RCCGGY	1 cut(s)	893
Cfr13I	GGNCC	3 cut(s)	246, 259, 276
Csp6I	GTAC	1 cut(s)	497
CviAII	CATG	4 cut(s)	256, 425, 687, 947
CviQI	GTAC	1 cut(s)	497
DdeI	CTNAG	7 cut(s)	188, 324, 345, 489, 613, 732, 933
DpnI	GATC	5 cut(s)	165, 574, 591, 677, 715
DpnII	GATC	5 cut(s)	163, 572, 589, 675, 713
DrdI	GACNNNNNNGTC	1 cut(s)	215
DseDI	GACNNNNNNGTC	1 cut(s)	215
Eam1104I	CTCTTC	2 cut(s)	805, 835
EarI	CTCTTC	2 cut(s)	805, 835
EciI	GGCGGA	1 cut(s)	118
Ecl136II	GAGCTC	2 cut(s)	344, 798
Eco130I	CCWWGG	1 cut(s)	147
Eco147I	AGGCCT	1 cut(s)	156
Eco24I	GRGCYC	2 cut(s)	346, 800
Eco47I	GGWCC	2 cut(s)	259, 276
Eco53kI	GAGCTC	2 cut(s)	344, 798
Eco88I	CYCGRG	2 cut(s)	743, 793
EcoICRI	GAGCTC	2 cut(s)	344, 798
EcoRII	CCWGG	3 cut(s)	68, 168, 281
EcoT14I	CCWWGG	1 cut(s)	147
EcoT38I	GRGCYC	2 cut(s)	346, 800
ErhI	CCWWGG	1 cut(s)	147
Esp3I	CGTCTC	1 cut(s)	173
FaeI	CATG	4 cut(s)	259, 428, 690, 950
FalI	AAGNNNNNCTT	2 cut(s)	144, 176
FaqI	GGGAC	1 cut(s)	726
FatI	CATG	4 cut(s)	255, 424, 686, 946
Fnu4HI	GCNGC	7 cut(s)	25, 132, 135, 138, 141, 144, 891
FokI	GGATG	2 cut(s)	565, 761
FriOI	GRGCYC	2 cut(s)	346, 800
Fsp4HI	GCNGC	7 cut(s)	25, 132, 135, 138, 141, 144, 891
FspBI	CTAG	2 cut(s)	570, 852
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	7 cut(s)	25, 132, 135, 138, 141, 144, 891
GsuI	CTGGAG	2 cut(s)	152, 482
HaeIII	GGCC	4 cut(s)	119, 156, 203, 248
HapII	CCGG	3 cut(s)	116, 270, 894
HhaI	GCGC	1 cut(s)	351
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	4 cut(s)	259, 428, 690, 950
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HincII	GTYRAC	3 cut(s)	42, 544, 787
HindII	GTYRAC	3 cut(s)	42, 544, 787
HindIII	AAGCTT	1 cut(s)	447
HinfI	GANTC	2 cut(s)	404, 466
HpaI	GTTAAC	1 cut(s)	787
HpaII	CCGG	3 cut(s)	116, 270, 894
HphI	GGTGA	1 cut(s)	861
Hpy166II	GTNNAC	5 cut(s)	42, 279, 544, 629, 787
Hpy188I	TCNGA	2 cut(s)	490, 675
Hpy188III	TCNNGA	8 cut(s)	178, 292, 431, 461, 550, 698, 743, 947
Hpy8I	GTNNAC	5 cut(s)	42, 279, 544, 629, 787
Hpy99I	CGWCG	3 cut(s)	209, 212, 229
HpyAV	CCTTC	8 cut(s)	5, 130, 146, 267, 365, 614, 636, 907
HpyCH4III	ACNGT	3 cut(s)	77, 184, 367
HpyCH4IV	ACGT	3 cut(s)	210, 288, 739
HpyCH4V	TGCA	2 cut(s)	27, 512
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 140, 143, 355
HpyF3I	CTNAG	7 cut(s)	188, 324, 345, 489, 613, 732, 933
HpySE526I	ACGT	3 cut(s)	210, 288, 739
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	4 cut(s)	259, 428, 690, 950
HspAI	GCGC	1 cut(s)	349
KspAI	GTTAAC	1 cut(s)	787
Kzo9I	GATC	5 cut(s)	163, 572, 589, 675, 713
LguI	GCTCTTC	1 cut(s)	805
LmnI	GCTCC	4 cut(s)	341, 683, 721, 757
Lsp1109I	GCAGC	2 cut(s)	11, 877
LweI	GCATC	1 cut(s)	739
MaeI	CTAG	2 cut(s)	570, 852
MaeII	ACGT	3 cut(s)	210, 288, 739
MaeIII	GTNAC	1 cut(s)	857
MalI	GATC	5 cut(s)	165, 574, 591, 677, 715
MboI	GATC	5 cut(s)	163, 572, 589, 675, 713
MboII	GAAGA	4 cut(s)	792, 822, 825, 828
MhlI	GDGCHC	2 cut(s)	346, 800
MluCI	AATT	4 cut(s)	312, 501, 534, 841
MlyI	GAGTC	2 cut(s)	398, 460
MmeI	TCCRAC	1 cut(s)	779
MroXI	GAANNNNTTC	1 cut(s)	829
MseI	TTAA	2 cut(s)	786, 812
MspI	CCGG	3 cut(s)	116, 270, 894
MspR9I	CCNGG	4 cut(s)	70, 116, 170, 283
Mva1269I	GAATGC	1 cut(s)	445
MvaI	CCWGG	3 cut(s)	70, 170, 283
MvnI	CGCG	1 cut(s)	351
MwoI	GCNNNNNNNGC	4 cut(s)	137, 140, 143, 355
NciI	CCSGG	1 cut(s)	116
NdeII	GATC	5 cut(s)	163, 572, 589, 675, 713
NlaIII	CATG	4 cut(s)	259, 428, 690, 950
NlaIV	GGNNCC	2 cut(s)	60, 723
NspI	RCATGY	1 cut(s)	690
PagI	TCATGA	1 cut(s)	946
PceI	AGGCCT	1 cut(s)	156
PciSI	GCTCTTC	1 cut(s)	805
PctI	GAATGC	1 cut(s)	445
PdmI	GAANNNNTTC	1 cut(s)	829
PflFI	GACNNNGTC	1 cut(s)	209
PfoI	TCCNGGA	2 cut(s)	68, 168
PkrI	GCNGC	7 cut(s)	26, 133, 136, 139, 142, 145, 892
PleI	GAGTC	2 cut(s)	398, 460
PpsI	GAGTC	2 cut(s)	398, 460
Psp124BI	GAGCTC	2 cut(s)	346, 800
Psp6I	CCWGG	3 cut(s)	68, 168, 281
PspGI	CCWGG	3 cut(s)	68, 168, 281
PspN4I	GGNNCC	2 cut(s)	60, 723
PspPI	GGNCC	3 cut(s)	246, 259, 276
PsyI	GACNNNGTC	1 cut(s)	209
RsaI	GTAC	1 cut(s)	498
RsaNI	GTAC	1 cut(s)	497
SacI	GAGCTC	2 cut(s)	346, 800
SapI	GCTCTTC	1 cut(s)	805
SaqAI	TTAA	2 cut(s)	786, 812
SatI	GCNGC	7 cut(s)	25, 132, 135, 138, 141, 144, 891
Sau3AI	GATC	5 cut(s)	163, 572, 589, 675, 713
Sau96I	GGNCC	3 cut(s)	246, 259, 276
SchI	GAGTC	2 cut(s)	398, 460
ScrFI	CCNGG	4 cut(s)	70, 116, 170, 283
SduI	GDGCHC	2 cut(s)	346, 800
SfaNI	GCATC	1 cut(s)	739
SinI	GGWCC	2 cut(s)	259, 276
SmlI	CTYRAG	1 cut(s)	564
SmoI	CTYRAG	1 cut(s)	564
Sse9I	AATT	4 cut(s)	312, 501, 534, 841
SseBI	AGGCCT	1 cut(s)	156
SsiI	CCGC	6 cut(s)	129, 132, 135, 138, 141, 144
SspMI	CTAG	2 cut(s)	570, 852
SstI	GAGCTC	2 cut(s)	346, 800
StuI	AGGCCT	1 cut(s)	156
StyD4I	CCNGG	4 cut(s)	68, 114, 168, 281
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	3 cut(s)	77, 184, 367
TaiI	ACGT	3 cut(s)	213, 291, 742
TaqI	TCGA	1 cut(s)	177
TasI	AATT	4 cut(s)	312, 501, 534, 841
TauI	GCSGC	5 cut(s)	134, 137, 140, 143, 146
Tru1I	TTAA	2 cut(s)	786, 812
Tru9I	TTAA	2 cut(s)	786, 812
TscAI	CASTG	3 cut(s)	82, 242, 370
TseI	GCWGC	2 cut(s)	24, 890
TspDTI	ATGAA	3 cut(s)	244, 413, 569
TspRI	CASTG	3 cut(s)	82, 242, 370
Tth111I	GACNNNGTC	1 cut(s)	209
VpaK11BI	GGWCC	2 cut(s)	259, 276
XceI	RCATGY	1 cut(s)	690
XmnI	GAANNNNTTC	1 cut(s)	829
XspI	CTAG	2 cut(s)	570, 852
ZraI	GACGTC	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.