Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002364

Physical Location & Seq

Genomic Coordinates Reverse (-)

15990199 .. 15991223

Gene Structure 1025 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G009530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTTGGCCGCTCTACGGTTTCCATCTCTGCAACAGGCCTTCTCCTCCTCCGCCGCCGCCGCCGCCAAGGAAGGCCTGCTTGATCTCCAGGAGGTCGAGACGGTTCTCAGCGACGTCAAGGTCATACCGGCGAACAAGCACTGCGAGTCCACCTGGCACATCAAGAACATCACCCAAGCCCTAATTTACAAGTCTAAGCAAAAGCAGAAAGGAGCTCAGCGCGTGGTGCTTCCCACTGTTGAAGGGCAAGAGGGAGGCAAGTGGATTGTCATTGACTCTAGGAAAGTGATAGTTCATGCTCTTGATGAGAATGCTAAAGCTTACTACAATCTGGAGACTCGATATCGACCAAGGAACCGATGTCCAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

123

Amino Acids

13.78

Weight (kDa)

9.48

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsfS	PF02410	26 - 114	8.4e-13	Ribosomal silencing factor during starvation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67620
fragaria_vesca	FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330
malus_domestica	MD13G1112100.v1.1 MD16G1111700.v1.1
prunus_persica	Prupe.1G233300_v2.0.a1
pyrus_communis	pycom13g09750 pycom16g09470
rosa_chinensis	RchiOBHm_Chr1g0343341 RchiOBHm_Chr1g0366581 RchiOBHm_Chr3g0456071 RchiOBHm_Chr4g0431131 RchiOBHm_Chr7g0183971 RchiOBHm_Chr7g0198741
rosa_laevigata	RLG00000006921
rosa_multiflora	Rmu_sc0005258.1_g000002 Rmu_sc0014629.1_g000007 Rmu_sc0023228.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015160 Rroxscaffold_5G00372730 Rroxscaffold_7G00210320
rosa_rugosa	Rorug04G0248600
rosa_samantha	Rh1CG146700 Rh1CG169800 Rh3AG217500 Rh3DG326500 Rh4AG304900 Rh4BG312100 Rh4CG328400 Rh4DG308700 Rh5AG537300 Rh6BG131200 Rh6DG116800
rosa_wichuraiana	Rw1G009740 Rw4G026500 Rw5G039480 Rw6G009530 Rw6G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
AatII	GACGTC	1 cut(s)	117
AccBSI	CCGCTC	1 cut(s)	11
AccII	CGCG	1 cut(s)	222
AciI	CCGC	6 cut(s)	9, 51, 54, 57, 60, 63
AcoI	YGGCCR	1 cut(s)	6
AcyI	GRCGYC	1 cut(s)	114
AfiI	CCNNNNNNNGG	1 cut(s)	15
AgsI	TTSAA	1 cut(s)	242
AjnI	CCWGG	2 cut(s)	87, 152
AluBI	AGCT	2 cut(s)	215, 320
AluI	AGCT	2 cut(s)	215, 320
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	2 cut(s)	92, 329
AoxI	GGCC	3 cut(s)	6, 36, 73
AspLEI	GCGC	1 cut(s)	222
AsuHPI	GGTGA	1 cut(s)	163
BanII	GRGCYC	1 cut(s)	217
Bbv12I	GWGCWC	1 cut(s)	217
BccI	CCATC	1 cut(s)	31
BciT130I	CCWGG	2 cut(s)	89, 154
BcoDI	GTCTC	2 cut(s)	92, 329
BfaI	CTAG	1 cut(s)	279
BisI	GCNGC	5 cut(s)	9, 54, 57, 60, 63
BlpI	GCTNAGC	1 cut(s)	216
BlsI	GCNGC	5 cut(s)	10, 55, 58, 61, 64
Bme1390I	CCNGG	2 cut(s)	89, 154
BmiI	GGNNCC	1 cut(s)	356
BmrFI	CCNGG	2 cut(s)	89, 154
BpmI	CTGGAG	2 cut(s)	71, 353
Bpu1102I	GCTNAGC	1 cut(s)	216
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	2 cut(s)	66, 350
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse118I	RCCGGY	1 cut(s)	127
BseBI	CCWGG	2 cut(s)	89, 154
BseDI	CCNNGG	2 cut(s)	66, 350
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseMII	CTCAG	2 cut(s)	121, 230
BseRI	GAGGAG	2 cut(s)	34, 37
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	3 cut(s)	8, 38, 75
BsiHKAI	GWGCWC	1 cut(s)	217
BsiSI	CCGG	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmAI	GTCTC	2 cut(s)	92, 329
BsmBI	CGTCTC	1 cut(s)	92
BsmI	GAATGC	1 cut(s)	316
BsnI	GGCC	3 cut(s)	8, 38, 75
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	1 cut(s)	82
Bsp1720I	GCTNAGC	1 cut(s)	216
BspACI	CCGC	6 cut(s)	9, 51, 54, 57, 60, 63
BspANI	GGCC	3 cut(s)	8, 38, 75
BspCNI	CTCAG	2 cut(s)	120, 229
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	356
BsrBI	CCGCTC	1 cut(s)	11
BsrFI	RCCGGY	1 cut(s)	127
BssAI	RCCGGY	1 cut(s)	127
BssECI	CCNNGG	2 cut(s)	66, 350
BssMI	GATC	1 cut(s)	82
BssNI	GRCGYC	1 cut(s)	114
BssT1I	CCWWGG	2 cut(s)	66, 350
Bst2UI	CCWGG	2 cut(s)	89, 154
Bst4CI	ACNGT	3 cut(s)	18, 103, 238
BstACI	GRCGYC	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	77
BstDEI	CTNAG	3 cut(s)	107, 195, 216
BstFNI	CGCG	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	222
BstKTI	GATC	1 cut(s)	85
BstMAI	GTCTC	2 cut(s)	92, 329
BstMBI	GATC	1 cut(s)	82
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 62, 226
BstNI	CCWGG	2 cut(s)	89, 154
BstSCI	CCNGG	2 cut(s)	87, 152
BstUI	CGCG	1 cut(s)	222
BsuRI	GGCC	3 cut(s)	8, 38, 75
BtsI	GCAGTG	1 cut(s)	139
BtsIMutI	CAGTG	2 cut(s)	139, 234
Cac8I	GCNNGC	1 cut(s)	77
CfoI	GCGC	1 cut(s)	222
Cfr10I	RCCGGY	1 cut(s)	127
CviAII	CATG	1 cut(s)	296
CviJI	RGCY	6 cut(s)	8, 38, 75, 179, 215, 320
CviKI_1	RGCY	6 cut(s)	8, 38, 75, 179, 215, 320
DdeI	CTNAG	3 cut(s)	107, 195, 216
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
EaeI	YGGCCR	1 cut(s)	6
EciI	GGCGGA	1 cut(s)	40
Ecl136II	GAGCTC	1 cut(s)	215
Eco130I	CCWWGG	2 cut(s)	66, 350
Eco147I	AGGCCT	2 cut(s)	38, 75
Eco24I	GRGCYC	1 cut(s)	217
Eco32I	GATATC	1 cut(s)	344
Eco53kI	GAGCTC	1 cut(s)	215
EcoICRI	GAGCTC	1 cut(s)	215
EcoRII	CCWGG	2 cut(s)	87, 152
EcoRV	GATATC	1 cut(s)	344
EcoT14I	CCWWGG	2 cut(s)	66, 350
EcoT38I	GRGCYC	1 cut(s)	217
ErhI	CCWWGG	2 cut(s)	66, 350
Esp3I	CGTCTC	1 cut(s)	92
FaeI	CATG	1 cut(s)	299
FaiI	YATR	3 cut(s)	125, 297, 370
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FatI	CATG	1 cut(s)	295
Fnu4HI	GCNGC	5 cut(s)	9, 54, 57, 60, 63
FriOI	GRGCYC	1 cut(s)	217
Fsp4HI	GCNGC	5 cut(s)	9, 54, 57, 60, 63
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	5 cut(s)	9, 54, 57, 60, 63
GsuI	CTGGAG	2 cut(s)	71, 353
HaeIII	GGCC	3 cut(s)	8, 38, 75
HapII	CCGG	1 cut(s)	128
HhaI	GCGC	1 cut(s)	222
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	1 cut(s)	299
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	318
HinfI	GANTC	3 cut(s)	146, 275, 337
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188III	TCNNGA	4 cut(s)	97, 163, 302, 332
Hpy8I	GTNNAC	1 cut(s)	150
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	3 cut(s)	49, 65, 236
HpyCH4III	ACNGT	3 cut(s)	18, 103, 238
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	1 cut(s)	31
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 62, 226
HpyF3I	CTNAG	3 cut(s)	107, 195, 216
HpySE526I	ACGT	1 cut(s)	114
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	299
HspAI	GCGC	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	82
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	8 cut(s)	20, 74, 89, 101, 139, 141, 166, 317
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	1 cut(s)	114
MalI	GATC	1 cut(s)	84
MbiI	CCGCTC	1 cut(s)	11
MboI	GATC	1 cut(s)	82
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	1 cut(s)	183
MlyI	GAGTC	3 cut(s)	155, 269, 331
MnlI	CCTC	5 cut(s)	55, 58, 85, 244, 248
MspI	CCGG	1 cut(s)	128
MspR9I	CCNGG	2 cut(s)	89, 154
Mva1269I	GAATGC	1 cut(s)	316
MvaI	CCWGG	2 cut(s)	89, 154
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	3 cut(s)	59, 62, 226
NdeII	GATC	1 cut(s)	82
NlaIII	CATG	1 cut(s)	299
NlaIV	GGNNCC	1 cut(s)	356
PceI	AGGCCT	2 cut(s)	38, 75
PctI	GAATGC	1 cut(s)	316
PfoI	TCCNGGA	1 cut(s)	87
PkrI	GCNGC	5 cut(s)	10, 55, 58, 61, 64
PleI	GAGTC	3 cut(s)	154, 269, 331
PpsI	GAGTC	3 cut(s)	154, 269, 331
Psp124BI	GAGCTC	1 cut(s)	217
Psp6I	CCWGG	2 cut(s)	87, 152
PspGI	CCWGG	2 cut(s)	87, 152
PspN4I	GGNNCC	1 cut(s)	356
SacI	GAGCTC	1 cut(s)	217
SatI	GCNGC	5 cut(s)	9, 54, 57, 60, 63
Sau3AI	GATC	1 cut(s)	82
SchI	GAGTC	3 cut(s)	155, 269, 331
ScrFI	CCNGG	2 cut(s)	89, 154
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	6 cut(s)	96, 117, 123, 155, 217, 322
Sse9I	AATT	1 cut(s)	183
SseBI	AGGCCT	2 cut(s)	38, 75
SsiI	CCGC	6 cut(s)	9, 51, 54, 57, 60, 63
SspMI	CTAG	1 cut(s)	279
SstI	GAGCTC	1 cut(s)	217
StuI	AGGCCT	2 cut(s)	38, 75
StyD4I	CCNGG	2 cut(s)	87, 152
StyI	CCWWGG	2 cut(s)	66, 350
TaaI	ACNGT	3 cut(s)	18, 103, 238
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	3 cut(s)	96, 340, 346
TasI	AATT	1 cut(s)	183
TauI	GCSGC	5 cut(s)	11, 56, 59, 62, 65
TscAI	CASTG	2 cut(s)	146, 241
TspDTI	ATGAA	1 cut(s)	284
TspRI	CASTG	2 cut(s)	146, 241
XspI	CTAG	1 cut(s)	279
ZraI	GACGTC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.