Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002364

Physical Location & Seq

Genomic Coordinates Forward (+)

41971102 .. 41971713

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0248600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCAAACCCTACTCCTAGGGTTTTGCATTTTCCTGGACCATCGGCATCTGGAGGTTCGTTCTCTTTCTCGGCAAAGGACAAGACTGATCTTTTCACTGCCTCTTCTTCCATCCCTTTGAAGAGGAAACCCGTTATTCGTCGTTTGGAGAGGCCAATTTCCCCTACTTCTCCTTCGGTCCCTGCAGGGGATGTTACTGAGACTGCTGCTCCTTTGGAGCACGAGTTAGAGAAGGACCAGAGTCCCACGATCGAACCTCCCATAGAGACTGTTGATTTGGATGGTTCTGCAGGTATGCAGTTGGTTCAAGATGCTGGTTTGTCTTCTACGAAACGAAATCTTACCAGTGTGGGTAACCCTTCCCCCAAGAAATTCAAAACTATATTGGGTGGAAAAATTCCAACCCTGCAGGCTGATGCGTTGGGATTGATTGAAGATGATAGTGATGTTGTTTTGCTAACTTTGAAGAAGAAGACTGGTAGGCCTCTTGGCAGCAAGAATAAGATTCAGCGCACTAGTACGAAGACTAAGGGTAGTCTTCTAAAGCTCACCTATCCTTCACCTACTGGATCTGCTTCCAGCCCTAGAGATAAGGGCAAAGGAAAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

203

Amino Acids

21.42

Weight (kDa)

9.84

Isoelectric Point (pI)

51.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67620
fragaria_vesca	FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330
malus_domestica	MD13G1112100.v1.1 MD16G1111700.v1.1
prunus_persica	Prupe.1G233300_v2.0.a1
pyrus_communis	pycom13g09750 pycom16g09470
rosa_chinensis	RchiOBHm_Chr1g0343341 RchiOBHm_Chr1g0366581 RchiOBHm_Chr3g0456071 RchiOBHm_Chr4g0431131 RchiOBHm_Chr7g0183971 RchiOBHm_Chr7g0198741
rosa_laevigata	RLG00000006921
rosa_multiflora	Rmu_sc0005258.1_g000002 Rmu_sc0014629.1_g000007 Rmu_sc0023228.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015160 Rroxscaffold_5G00372730 Rroxscaffold_7G00210320
rosa_rugosa	Rorug04G0248600
rosa_samantha	Rh1CG146700 Rh1CG169800 Rh3AG217500 Rh3DG326500 Rh4AG304900 Rh4BG312100 Rh4CG328400 Rh4DG308700 Rh5AG537300 Rh6BG131200 Rh6DG116800
rosa_wichuraiana	Rw1G009740 Rw4G026500 Rw5G039480 Rw6G009530 Rw6G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	281
AclWI	GGATC	1 cut(s)	577
AcsI	RAATTY	2 cut(s)	371, 396
AfaI	GTAC	1 cut(s)	520
AfiI	CCNNNNNNNGG	1 cut(s)	187
AgsI	TTSAA	5 cut(s)	121, 308, 376, 434, 466
AhlI	ACTAGT	1 cut(s)	515
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	1 cut(s)	547
AluI	AGCT	1 cut(s)	547
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	2 cut(s)	194, 260
AlwI	GGATC	1 cut(s)	577
AoxI	GGCC	2 cut(s)	152, 482
ApeKI	GCWGC	2 cut(s)	206, 492
ApoI	RAATTY	2 cut(s)	371, 396
ArsI	GACNNNNNNTTYG	2 cut(s)	259, 291
AspA2I	CCTAGG	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	513
AspS9I	GGNCC	3 cut(s)	38, 178, 235
AsuHPI	GGTGA	2 cut(s)	541, 552
AvaII	GGWCC	3 cut(s)	38, 178, 235
AvrII	CCTAGG	1 cut(s)	17
BauI	CACGAG	1 cut(s)	221
BbsI	GAAGAC	4 cut(s)	315, 479, 530, 530
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	2 cut(s)	193, 504
BccI	CCATC	3 cut(s)	49, 119, 275
BciT130I	CCWGG	1 cut(s)	36
BcoDI	GTCTC	2 cut(s)	194, 260
BcuI	ACTAGT	1 cut(s)	515
BfaI	CTAG	3 cut(s)	18, 516, 585
BfmI	CTRYAG	3 cut(s)	183, 288, 407
BfuAI	ACCTGC	1 cut(s)	281
BisI	GCNGC	2 cut(s)	207, 493
BlnI	CCTAGG	1 cut(s)	17
BlsI	GCNGC	2 cut(s)	208, 494
Bme1390I	CCNGG	1 cut(s)	36
Bme18I	GGWCC	3 cut(s)	38, 178, 235
BmgT120I	GGNCC	3 cut(s)	38, 178, 235
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	1 cut(s)	36
BmsI	GCATC	3 cut(s)	56, 301, 406
BoxI	GACNNNNGTC	1 cut(s)	240
BpiI	GAAGAC	4 cut(s)	315, 479, 530, 530
BpmI	CTGGAG	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	17
BsaXI	ACNNNNNCTCC	4 cut(s)	193, 209, 223, 239
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse1I	ACTGG	3 cut(s)	345, 481, 571
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	17
BseGI	GGATG	3 cut(s)	111, 196, 286
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	3 cut(s)	345, 481, 571
BseXI	GCAGC	2 cut(s)	193, 504
Bsh1285I	CGRYCG	1 cut(s)	252
BshFI	GGCC	2 cut(s)	154, 484
BsiEI	CGRYCG	1 cut(s)	252
BsiHKAI	GWGCWC	1 cut(s)	222
BslFI	GGGAC	2 cut(s)	164, 228
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmAI	GTCTC	2 cut(s)	194, 260
BsmFI	GGGAC	2 cut(s)	164, 228
BsnI	GGCC	2 cut(s)	154, 484
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	3 cut(s)	88, 249, 569
BspANI	GGCC	2 cut(s)	154, 484
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	180
BspMAI	CTGCAG	3 cut(s)	187, 292, 411
BspMI	ACCTGC	1 cut(s)	281
BspPI	GGATC	1 cut(s)	577
BsrI	ACTGG	3 cut(s)	345, 481, 571
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	3 cut(s)	88, 249, 569
BssSI	CACGAG	1 cut(s)	221
BssT1I	CCWWGG	1 cut(s)	17
Bst2BI	CACGAG	1 cut(s)	221
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	2 cut(s)	109, 116
BstC8I	GCNNGC	1 cut(s)	411
BstDEI	CTNAG	2 cut(s)	198, 528
BstEII	GGTNACC	1 cut(s)	353
BstF5I	GGATG	3 cut(s)	111, 196, 286
BstHHI	GCGC	1 cut(s)	513
BstKTI	GATC	3 cut(s)	91, 252, 572
BstMAI	GTCTC	2 cut(s)	194, 260
BstMBI	GATC	3 cut(s)	88, 249, 569
BstMCI	CGRYCG	1 cut(s)	252
BstNI	CCWGG	1 cut(s)	36
BstPAI	GACNNNNGTC	1 cut(s)	240
BstPI	GGTNACC	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	34
BstSFI	CTRYAG	3 cut(s)	183, 288, 407
BstV1I	GCAGC	2 cut(s)	193, 504
BstV2I	GAAGAC	4 cut(s)	315, 479, 530, 530
BstX2I	RGATCY	1 cut(s)	569
BstYI	RGATCY	1 cut(s)	569
BsuRI	GGCC	2 cut(s)	154, 484
BtsCI	GGATG	3 cut(s)	111, 196, 286
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	2 cut(s)	96, 352
BveI	ACCTGC	1 cut(s)	281
Cac8I	GCNNGC	1 cut(s)	411
CfoI	GCGC	1 cut(s)	513
Cfr13I	GGNCC	3 cut(s)	38, 178, 235
Csp6I	GTAC	1 cut(s)	519
CviJI	RGCY	5 cut(s)	154, 413, 484, 547, 582
CviKI_1	RGCY	5 cut(s)	154, 413, 484, 547, 582
CviQI	GTAC	1 cut(s)	519
DdeI	CTNAG	2 cut(s)	198, 528
DpnI	GATC	3 cut(s)	90, 251, 571
DpnII	GATC	3 cut(s)	88, 249, 569
Eam1104I	CTCTTC	2 cut(s)	109, 116
EarI	CTCTTC	2 cut(s)	109, 116
Eco130I	CCWWGG	1 cut(s)	17
Eco147I	AGGCCT	1 cut(s)	484
Eco47I	GGWCC	3 cut(s)	38, 178, 235
Eco91I	GGTNACC	1 cut(s)	353
EcoO65I	GGTNACC	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	34
EcoT14I	CCWWGG	1 cut(s)	17
ErhI	CCWWGG	1 cut(s)	17
FaiI	YATR	3 cut(s)	263, 296, 383
FalI	AAGNNNNNCTT	1 cut(s)	591
FaqI	GGGAC	2 cut(s)	164, 228
Fnu4HI	GCNGC	2 cut(s)	207, 493
FokI	GGATG	3 cut(s)	98, 203, 293
Fsp4HI	GCNGC	2 cut(s)	207, 493
FspBI	CTAG	3 cut(s)	18, 516, 585
GlaI	GCGC	1 cut(s)	512
GluI	GCNGC	2 cut(s)	207, 493
GsuI	CTGGAG	1 cut(s)	72
HaeIII	GGCC	2 cut(s)	154, 484
HhaI	GCGC	1 cut(s)	513
Hin6I	GCGC	1 cut(s)	511
HinP1I	GCGC	1 cut(s)	511
HinfI	GANTC	2 cut(s)	241, 505
HphI	GGTGA	2 cut(s)	541, 552
Hpy188III	TCNNGA	2 cut(s)	51, 308
Hpy99I	CGWCG	1 cut(s)	144
HpyAV	CCTTC	4 cut(s)	183, 226, 369, 567
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4V	TGCA	5 cut(s)	28, 185, 290, 298, 409
HpyF3I	CTNAG	2 cut(s)	198, 528
HspAI	GCGC	1 cut(s)	511
Kzo9I	GATC	3 cut(s)	88, 249, 569
LmnI	GCTCC	2 cut(s)	214, 217
Lsp1109I	GCAGC	2 cut(s)	193, 504
LweI	GCATC	3 cut(s)	56, 301, 406
MaeI	CTAG	3 cut(s)	18, 516, 585
MaeIII	GTNAC	2 cut(s)	193, 353
MalI	GATC	3 cut(s)	90, 251, 571
MboI	GATC	3 cut(s)	88, 249, 569
MflI	RGATCY	1 cut(s)	569
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	3 cut(s)	156, 371, 396
MlyI	GAGTC	1 cut(s)	250
MmeI	TCCRAC	1 cut(s)	425
MnlI	CCTC	6 cut(s)	47, 112, 117, 144, 267, 495
MseI	TTAA	1 cut(s)	610
MspR9I	CCNGG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	36
NdeII	GATC	3 cut(s)	88, 249, 569
NlaIV	GGNNCC	1 cut(s)	180
NmeAIII	GCCGAG	1 cut(s)	50
PceI	AGGCCT	1 cut(s)	484
PfeI	GAWTC	1 cut(s)	505
PfoI	TCCNGGA	1 cut(s)	34
PkrI	GCNGC	2 cut(s)	208, 494
Ple19I	CGATCG	1 cut(s)	252
PleI	GAGTC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	249
PshAI	GACNNNNGTC	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	34
PspEI	GGTNACC	1 cut(s)	353
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	3 cut(s)	38, 178, 235
PstI	CTGCAG	3 cut(s)	187, 292, 411
PsuI	RGATCY	1 cut(s)	569
PvuI	CGATCG	1 cut(s)	252
RsaI	GTAC	1 cut(s)	520
RsaNI	GTAC	1 cut(s)	519
SaqAI	TTAA	1 cut(s)	610
SatI	GCNGC	2 cut(s)	207, 493
Sau3AI	GATC	3 cut(s)	88, 249, 569
Sau96I	GGNCC	3 cut(s)	38, 178, 235
SbfI	CCTGCAGG	2 cut(s)	187, 411
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	1 cut(s)	36
SdaI	CCTGCAGG	2 cut(s)	187, 411
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	6 cut(s)	58, 259, 295, 549, 554, 565
SfaNI	GCATC	3 cut(s)	56, 301, 406
SfcI	CTRYAG	3 cut(s)	183, 288, 407
SinI	GGWCC	3 cut(s)	38, 178, 235
SpeI	ACTAGT	1 cut(s)	515
Sse8387I	CCTGCAGG	2 cut(s)	187, 411
Sse9I	AATT	3 cut(s)	156, 371, 396
SseBI	AGGCCT	1 cut(s)	484
SspMI	CTAG	3 cut(s)	18, 516, 585
StuI	AGGCCT	1 cut(s)	484
StyD4I	CCNGG	1 cut(s)	34
StyI	CCWWGG	1 cut(s)	17
TaaI	ACNGT	1 cut(s)	271
TaqI	TCGA	1 cut(s)	252
TaqII	GACCGA	1 cut(s)	166
TasI	AATT	3 cut(s)	156, 371, 396
TfiI	GAWTC	1 cut(s)	505
Tru1I	TTAA	1 cut(s)	610
Tru9I	TTAA	1 cut(s)	610
TscAI	CASTG	2 cut(s)	103, 352
TseI	GCWGC	2 cut(s)	206, 492
TspRI	CASTG	2 cut(s)	103, 352
VpaK11BI	GGWCC	3 cut(s)	38, 178, 235
XapI	RAATTY	2 cut(s)	371, 396
XmaJI	CCTAGG	1 cut(s)	17
XspI	CTAG	3 cut(s)	18, 516, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.