Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002364

Physical Location & Seq

Genomic Coordinates Forward (+)

48023595 .. 48026165

Gene Structure 2571 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG312100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGTTGGCCGCTCTACGCTCCCGATCGTCGTCCTCACTGCTTCTTCAACAATGGAGGCTAGGGTTTCCATCTCTGCACCAAGCCTTCTCCTCCTCCACCGCCGCCAAGGAAGGCCTGCTTGATCTCCAGGAGGTCGAGACGGTTCTCAGCGACGTCAAGGCCGACGACGTCAAGGTCATACCGGCGAACAAGCACTGCGAGTGGGCCGATTTCATGGTCCTCGCCACCGGAAGGTCCACCTGGCACGTCAAGAACATCGCCCAAGCCCTAATTTACAAGTCTAAGCAAAAGCAGAAAGGAGCTCAGCGCTTGGTGGTTCCCACTGTTGAAGGACAAGAGGGAGGAAAGTGGATTGTCATCGACTCTGGGAAAGTGATAGTTCATGCCCTTGATGAGAATGCTAGAGCTTACTACAATTTGGAGACTCTTTGGACAACAAAGCCATCTGAGAAAGAACCAATTCAGGATTTGGAAAAGGCTTTTGTGAAGGTTCGTCCTAAGAACAACTCCAAGAGGAAACCAGCACAGAAATGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

179

Amino Acids

20.04

Weight (kDa)

9.52

Isoelectric Point (pI)

44.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsfS	PF02410	44 - 144	1.7e-25	Ribosomal silencing factor during starvation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67620
fragaria_vesca	FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330
malus_domestica	MD13G1112100.v1.1 MD16G1111700.v1.1
prunus_persica	Prupe.1G233300_v2.0.a1
pyrus_communis	pycom13g09750 pycom16g09470
rosa_chinensis	RchiOBHm_Chr1g0343341 RchiOBHm_Chr1g0366581 RchiOBHm_Chr3g0456071 RchiOBHm_Chr4g0431131 RchiOBHm_Chr7g0183971 RchiOBHm_Chr7g0198741
rosa_laevigata	RLG00000006921
rosa_multiflora	Rmu_sc0005258.1_g000002 Rmu_sc0014629.1_g000007 Rmu_sc0023228.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015160 Rroxscaffold_5G00372730 Rroxscaffold_7G00210320
rosa_rugosa	Rorug04G0248600
rosa_samantha	Rh1CG146700 Rh1CG169800 Rh3AG217500 Rh3DG326500 Rh4AG304900 Rh4BG312100 Rh4CG328400 Rh4DG308700 Rh5AG537300 Rh6BG131200 Rh6DG116800
rosa_wichuraiana	Rw1G009740 Rw4G026500 Rw5G039480 Rw6G009530 Rw6G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	173
AatII	GACGTC	2 cut(s)	156, 171
AccBSI	CCGCTC	1 cut(s)	11
AciI	CCGC	3 cut(s)	9, 99, 102
AcoI	YGGCCR	1 cut(s)	6
AcyI	GRCGYC	2 cut(s)	153, 168
AfeI	AGCGCT	1 cut(s)	308
AfiI	CCNNNNNNNGG	1 cut(s)	231
AgsI	TTSAA	2 cut(s)	47, 329
AjiI	CACGTC	1 cut(s)	247
AjnI	CCWGG	2 cut(s)	126, 239
AluBI	AGCT	2 cut(s)	302, 407
AluI	AGCT	2 cut(s)	302, 407
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	2 cut(s)	131, 416
Aor51HI	AGCGCT	1 cut(s)	308
AoxI	GGCC	4 cut(s)	6, 112, 159, 204
Asp700I	GAANNNNTTC	1 cut(s)	459
AspLEI	GCGC	1 cut(s)	309
AspS9I	GGNCC	3 cut(s)	204, 217, 234
AvaII	GGWCC	2 cut(s)	217, 234
BanII	GRGCYC	1 cut(s)	304
Bbv12I	GWGCWC	1 cut(s)	304
BccI	CCATC	2 cut(s)	76, 451
BciT130I	CCWGG	2 cut(s)	128, 241
BcoDI	GTCTC	2 cut(s)	131, 416
BfaI	CTAG	2 cut(s)	59, 402
BfoI	RGCGCY	1 cut(s)	310
BisI	GCNGC	2 cut(s)	9, 102
BlpI	GCTNAGC	1 cut(s)	303
BlsI	GCNGC	2 cut(s)	10, 103
Bme1390I	CCNGG	2 cut(s)	128, 241
Bme18I	GGWCC	2 cut(s)	217, 234
BmgBI	CACGTC	1 cut(s)	247
BmgT120I	GGNCC	3 cut(s)	204, 217, 234
BmiI	GGNNCC	1 cut(s)	318
BmrFI	CCNGG	2 cut(s)	128, 241
BpmI	CTGGAG	1 cut(s)	110
Bpu1102I	GCTNAGC	1 cut(s)	303
BsaBI	GATNNNNATC	1 cut(s)	356
BsaHI	GRCGYC	2 cut(s)	153, 168
BsaJI	CCNNGG	1 cut(s)	105
BsaWI	WCCGGW	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse118I	RCCGGY	1 cut(s)	181
Bse8I	GATNNNNATC	1 cut(s)	356
BseBI	CCWGG	2 cut(s)	128, 241
BseDI	CCNNGG	1 cut(s)	105
BseJI	GATNNNNATC	1 cut(s)	356
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMII	CTCAG	3 cut(s)	160, 317, 438
BseRI	GAGGAG	2 cut(s)	79, 82
BsgI	GTGCAG	1 cut(s)	59
Bsh1285I	CGRYCG	1 cut(s)	26
BshFI	GGCC	4 cut(s)	8, 114, 161, 206
BsiEI	CGRYCG	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	304
BsiSI	CCGG	2 cut(s)	182, 228
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmAI	GTCTC	2 cut(s)	131, 416
BsmBI	CGTCTC	1 cut(s)	131
BsmI	GAATGC	1 cut(s)	403
BsnI	GGCC	4 cut(s)	8, 114, 161, 206
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	2 cut(s)	23, 121
Bsp1720I	GCTNAGC	1 cut(s)	303
BspACI	CCGC	3 cut(s)	9, 99, 102
BspANI	GGCC	4 cut(s)	8, 114, 161, 206
BspCNI	CTCAG	3 cut(s)	159, 316, 439
BspLI	GGNNCC	1 cut(s)	318
BsrBI	CCGCTC	1 cut(s)	11
BsrFI	RCCGGY	1 cut(s)	181
BssAI	RCCGGY	1 cut(s)	181
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	2 cut(s)	23, 121
BssNI	GRCGYC	2 cut(s)	153, 168
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	2 cut(s)	128, 241
Bst4CI	ACNGT	2 cut(s)	142, 325
BstACI	GRCGYC	2 cut(s)	153, 168
BstC8I	GCNNGC	1 cut(s)	116
BstDEI	CTNAG	5 cut(s)	146, 282, 303, 447, 498
BstH2I	RGCGCY	1 cut(s)	310
BstHHI	GCGC	1 cut(s)	309
BstKTI	GATC	2 cut(s)	26, 124
BstMAI	GTCTC	2 cut(s)	131, 416
BstMBI	GATC	2 cut(s)	23, 121
BstMCI	CGRYCG	1 cut(s)	26
BstNI	CCWGG	2 cut(s)	128, 241
BstSCI	CCNGG	2 cut(s)	126, 239
BsuRI	GGCC	4 cut(s)	8, 114, 161, 206
BtgZI	GCGATG	1 cut(s)	241
BtrI	CACGTC	1 cut(s)	247
BtsI	GCAGTG	2 cut(s)	35, 193
BtsIMutI	CAGTG	3 cut(s)	35, 193, 321
Cac8I	GCNNGC	1 cut(s)	116
CfoI	GCGC	1 cut(s)	309
Cfr10I	RCCGGY	1 cut(s)	181
Cfr13I	GGNCC	3 cut(s)	204, 217, 234
CviAII	CATG	2 cut(s)	214, 383
DdeI	CTNAG	5 cut(s)	146, 282, 303, 447, 498
DpnI	GATC	2 cut(s)	25, 123
DpnII	GATC	2 cut(s)	23, 121
DrdI	GACNNNNNNGTC	1 cut(s)	173
DseDI	GACNNNNNNGTC	1 cut(s)	173
EaeI	YGGCCR	1 cut(s)	6
Ecl136II	GAGCTC	1 cut(s)	302
Eco130I	CCWWGG	1 cut(s)	105
Eco147I	AGGCCT	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	304
Eco47I	GGWCC	2 cut(s)	217, 234
Eco47III	AGCGCT	1 cut(s)	308
Eco53kI	GAGCTC	1 cut(s)	302
EcoICRI	GAGCTC	1 cut(s)	302
EcoRII	CCWGG	2 cut(s)	126, 239
EcoT14I	CCWWGG	1 cut(s)	105
EcoT38I	GRGCYC	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	105
Esp3I	CGTCTC	1 cut(s)	131
FaeI	CATG	2 cut(s)	217, 386
FaiI	YATR	3 cut(s)	179, 215, 384
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FatI	CATG	2 cut(s)	213, 382
Fnu4HI	GCNGC	2 cut(s)	9, 102
FriOI	GRGCYC	1 cut(s)	304
Fsp4HI	GCNGC	2 cut(s)	9, 102
FspBI	CTAG	2 cut(s)	59, 402
GlaI	GCGC	1 cut(s)	308
GluI	GCNGC	2 cut(s)	9, 102
GsuI	CTGGAG	1 cut(s)	110
HaeII	RGCGCY	1 cut(s)	310
HaeIII	GGCC	4 cut(s)	8, 114, 161, 206
HapII	CCGG	2 cut(s)	182, 228
HhaI	GCGC	1 cut(s)	309
Hin1I	GRCGYC	2 cut(s)	153, 168
Hin1II	CATG	2 cut(s)	217, 386
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HinfI	GANTC	2 cut(s)	362, 424
HpaII	CCGG	2 cut(s)	182, 228
Hpy166II	GTNNAC	1 cut(s)	237
Hpy188I	TCNGA	1 cut(s)	448
Hpy188III	TCNNGA	4 cut(s)	21, 136, 250, 464
Hpy8I	GTNNAC	1 cut(s)	237
Hpy99I	CGWCG	4 cut(s)	31, 155, 167, 170
HpyAV	CCTTC	5 cut(s)	94, 104, 225, 323, 481
HpyCH4III	ACNGT	2 cut(s)	142, 325
HpyCH4IV	ACGT	3 cut(s)	153, 168, 246
HpyCH4V	TGCA	1 cut(s)	76
HpyF3I	CTNAG	5 cut(s)	146, 282, 303, 447, 498
HpySE526I	ACGT	3 cut(s)	153, 168, 246
Hsp92I	GRCGYC	2 cut(s)	153, 168
Hsp92II	CATG	2 cut(s)	217, 386
HspAI	GCGC	1 cut(s)	307
Kzo9I	GATC	2 cut(s)	23, 121
LmnI	GCTCC	2 cut(s)	23, 299
MaeI	CTAG	2 cut(s)	59, 402
MaeII	ACGT	3 cut(s)	153, 168, 246
MalI	GATC	2 cut(s)	25, 123
MbiI	CCGCTC	1 cut(s)	11
MboI	GATC	2 cut(s)	23, 121
MboII	GAAGA	1 cut(s)	35
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	3 cut(s)	270, 415, 459
MlyI	GAGTC	2 cut(s)	356, 418
MnlI	CCTC	9 cut(s)	43, 48, 100, 103, 124, 230, 331, 335, 507
MroXI	GAANNNNTTC	1 cut(s)	459
MseI	TTAA	1 cut(s)	538
MslI	CAYNNNNRTG	1 cut(s)	529
MspI	CCGG	2 cut(s)	182, 228
MspR9I	CCNGG	2 cut(s)	128, 241
Mva1269I	GAATGC	1 cut(s)	403
MvaI	CCWGG	2 cut(s)	128, 241
NdeII	GATC	2 cut(s)	23, 121
NlaIII	CATG	2 cut(s)	217, 386
NlaIV	GGNNCC	1 cut(s)	318
PceI	AGGCCT	1 cut(s)	114
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PctI	GAATGC	1 cut(s)	403
PdmI	GAANNNNTTC	1 cut(s)	459
PflFI	GACNNNGTC	1 cut(s)	167
PfoI	TCCNGGA	1 cut(s)	126
PkrI	GCNGC	2 cut(s)	10, 103
Ple19I	CGATCG	1 cut(s)	26
PleI	GAGTC	2 cut(s)	356, 418
PpsI	GAGTC	2 cut(s)	356, 418
Psp124BI	GAGCTC	1 cut(s)	304
Psp6I	CCWGG	2 cut(s)	126, 239
PspGI	CCWGG	2 cut(s)	126, 239
PspN4I	GGNNCC	1 cut(s)	318
PspPI	GGNCC	3 cut(s)	204, 217, 234
PsyI	GACNNNGTC	1 cut(s)	167
PvuI	CGATCG	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	529
SacI	GAGCTC	1 cut(s)	304
SaqAI	TTAA	1 cut(s)	538
SatI	GCNGC	2 cut(s)	9, 102
Sau3AI	GATC	2 cut(s)	23, 121
Sau96I	GGNCC	3 cut(s)	204, 217, 234
SchI	GAGTC	2 cut(s)	356, 418
ScrFI	CCNGG	2 cut(s)	128, 241
SduI	GDGCHC	1 cut(s)	304
SinI	GGWCC	2 cut(s)	217, 234
SmiMI	CAYNNNNRTG	1 cut(s)	529
Sse9I	AATT	3 cut(s)	270, 415, 459
SseBI	AGGCCT	1 cut(s)	114
SsiI	CCGC	3 cut(s)	9, 99, 102
SspMI	CTAG	2 cut(s)	59, 402
SstI	GAGCTC	1 cut(s)	304
StuI	AGGCCT	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	126, 239
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	2 cut(s)	142, 325
TaiI	ACGT	3 cut(s)	156, 171, 249
TaqI	TCGA	2 cut(s)	135, 360
TasI	AATT	3 cut(s)	270, 415, 459
TauI	GCSGC	2 cut(s)	11, 104
Tru1I	TTAA	1 cut(s)	538
Tru9I	TTAA	1 cut(s)	538
TscAI	CASTG	3 cut(s)	42, 200, 328
TspDTI	ATGAA	2 cut(s)	202, 371
TspRI	CASTG	3 cut(s)	42, 200, 328
Tth111I	GACNNNGTC	1 cut(s)	167
VpaK11BI	GGWCC	2 cut(s)	217, 234
XmnI	GAANNNNTTC	1 cut(s)	459
XspI	CTAG	2 cut(s)	59, 402
ZraI	GACGTC	2 cut(s)	154, 169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.