Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002364

Physical Location & Seq

Genomic Coordinates Reverse (-)

18919710 .. 18923727

Gene Structure 4018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00015160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAAAGGACCAGCACGTGCGATCTCATGTTGGCCGCTCTACGCTCCCGATCATCGTTCTCACTGCCTTCTTCGACAATGGAGGCCAGGGTTTCCATCTCTGCACCAGGCCTTCTCCTCCTCCGCCGCCACCGCCGCCAAGGAAGGCTTGCTTGATCTCCAGGAGGTCGAGACGGTTCTCAGCGAAGTCAAGGCCGACGACGTCAAGGTCAGACCGGCGAACCAGCACTGCGAGTGGGCCGATTTCATGGTCCTCGCCACCGGAAGGTCCACCTGGCACGTCAAGAACATCGCCCAAGCCCTAATTTACAAGTCTAAGCAAAAGCAGAAAGGAGCTCAGCGCGTGGTGCTTCCCACTGTTGAAGGGCAAGAGGGAGGCAAGTGGATTGTCATTGACTCTGGGAAAGTGATAGTTCATGCTCTTGATGAGAATGCTAAAGCTTACTACAATCTGGAGACTCTTTGGACAACAAAGCCGTCTGAGAAAGAACCAATTCAGCTTGGAATGCTAAAAGTTTTGGTGGTGTTACTTGTGGTAAAATTGAGCAGCAGCATGAGCTCCAATTATTGGAACAGCAGTCTGCTTCTAGTGACCGTTGATCTGCGCTGGTCAATGAGACATTGCAGTTATATGACCGAAACTCTTTTCACGAGATGTTCCAGGGAAGCATGGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

225

Amino Acids

25.4

Weight (kDa)

9.07

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsfS	PF02410	55 - 155	8.6e-23	Ribosomal silencing factor during starvation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67620
fragaria_vesca	FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330
malus_domestica	MD13G1112100.v1.1 MD16G1111700.v1.1
prunus_persica	Prupe.1G233300_v2.0.a1
pyrus_communis	pycom13g09750 pycom16g09470
rosa_chinensis	RchiOBHm_Chr1g0343341 RchiOBHm_Chr1g0366581 RchiOBHm_Chr3g0456071 RchiOBHm_Chr4g0431131 RchiOBHm_Chr7g0183971 RchiOBHm_Chr7g0198741
rosa_laevigata	RLG00000006921
rosa_multiflora	Rmu_sc0005258.1_g000002 Rmu_sc0014629.1_g000007 Rmu_sc0023228.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015160 Rroxscaffold_5G00372730 Rroxscaffold_7G00210320
rosa_rugosa	Rorug04G0248600
rosa_samantha	Rh1CG146700 Rh1CG169800 Rh3AG217500 Rh3DG326500 Rh4AG304900 Rh4BG312100 Rh4CG328400 Rh4DG308700 Rh5AG537300 Rh6BG131200 Rh6DG116800
rosa_wichuraiana	Rw1G009740 Rw4G026500 Rw5G039480 Rw6G009530 Rw6G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AatII	GACGTC	1 cut(s)	204
AccB7I	CCANNNNNTGG	1 cut(s)	567
AccBSI	CCGCTC	1 cut(s)	37
AccII	CGCG	1 cut(s)	342
AciI	CCGC	5 cut(s)	35, 123, 126, 132, 135
AcoI	YGGCCR	1 cut(s)	32
AcvI	CACGTG	1 cut(s)	17
AcyI	GRCGYC	1 cut(s)	201
AfiI	CCNNNNNNNGG	2 cut(s)	264, 567
AgsI	TTSAA	1 cut(s)	362
AjiI	CACGTC	1 cut(s)	280
AjnI	CCWGG	5 cut(s)	85, 105, 159, 272, 659
AluBI	AGCT	4 cut(s)	335, 440, 499, 558
AluI	AGCT	4 cut(s)	335, 440, 499, 558
Alw21I	GWGCWC	2 cut(s)	337, 560
Alw26I	GTCTC	3 cut(s)	164, 449, 610
AoxI	GGCC	5 cut(s)	32, 83, 108, 192, 237
ApeKI	GCWGC	2 cut(s)	546, 549
Asp700I	GAANNNNTTC	1 cut(s)	492
AspLEI	GCGC	2 cut(s)	342, 606
AspS9I	GGNCC	4 cut(s)	8, 237, 250, 267
AvaII	GGWCC	3 cut(s)	8, 250, 267
BanII	GRGCYC	2 cut(s)	337, 560
BauI	CACGAG	1 cut(s)	649
BbrPI	CACGTG	1 cut(s)	17
Bbv12I	GWGCWC	2 cut(s)	337, 560
BbvI	GCAGC	2 cut(s)	558, 561
BccI	CCATC	1 cut(s)	103
BceAI	ACGGC	1 cut(s)	460
BciT130I	CCWGG	5 cut(s)	87, 107, 161, 274, 661
BcoDI	GTCTC	3 cut(s)	164, 449, 610
BfaI	CTAG	1 cut(s)	587
BisI	GCNGC	5 cut(s)	35, 126, 135, 547, 550
BlpI	GCTNAGC	1 cut(s)	336
BlsI	GCNGC	5 cut(s)	36, 127, 136, 548, 551
Bme1390I	CCNGG	5 cut(s)	87, 107, 161, 274, 661
Bme18I	GGWCC	3 cut(s)	8, 250, 267
BmgBI	CACGTC	1 cut(s)	280
BmgT120I	GGNCC	4 cut(s)	8, 237, 250, 267
BmrFI	CCNGG	5 cut(s)	87, 107, 161, 274, 661
BpmI	CTGGAG	2 cut(s)	143, 473
Bpu1102I	GCTNAGC	1 cut(s)	336
BsaAI	YACGTR	1 cut(s)	17
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	3 cut(s)	86, 138, 660
BsaWI	WCCGGW	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 567
Bse118I	RCCGGY	1 cut(s)	214
Bse3DI	GCAATG	1 cut(s)	619
BseBI	CCWGG	5 cut(s)	87, 107, 161, 274, 661
BseDI	CCNNGG	3 cut(s)	86, 138, 660
BseLI	CCNNNNNNNGG	2 cut(s)	264, 567
BseMI	GCAATG	1 cut(s)	619
BseMII	CTCAG	3 cut(s)	193, 350, 471
BseRI	GAGGAG	2 cut(s)	106, 109
BseXI	GCAGC	2 cut(s)	558, 561
BsgI	GTGCAG	1 cut(s)	86
Bsh1236I	CGCG	1 cut(s)	342
BshFI	GGCC	5 cut(s)	34, 85, 110, 194, 239
BsiHKAI	GWGCWC	2 cut(s)	337, 560
BsiSI	CCGG	2 cut(s)	215, 261
BslI	CCNNNNNNNGG	2 cut(s)	264, 567
BsmAI	GTCTC	3 cut(s)	164, 449, 610
BsmBI	CGTCTC	1 cut(s)	164
BsmI	GAATGC	2 cut(s)	436, 510
BsnI	GGCC	5 cut(s)	34, 85, 110, 194, 239
Bsp1286I	GDGCHC	2 cut(s)	337, 560
Bsp143I	GATC	4 cut(s)	21, 49, 154, 598
Bsp1720I	GCTNAGC	1 cut(s)	336
BspACI	CCGC	5 cut(s)	35, 123, 126, 132, 135
BspANI	GGCC	5 cut(s)	34, 85, 110, 194, 239
BspCNI	CTCAG	3 cut(s)	192, 349, 472
BspFNI	CGCG	1 cut(s)	342
BsrBI	CCGCTC	1 cut(s)	37
BsrDI	GCAATG	1 cut(s)	619
BsrFI	RCCGGY	1 cut(s)	214
BssAI	RCCGGY	1 cut(s)	214
BssECI	CCNNGG	3 cut(s)	86, 138, 660
BssMI	GATC	4 cut(s)	21, 49, 154, 598
BssNI	GRCGYC	1 cut(s)	201
BssSI	CACGAG	1 cut(s)	649
BssT1I	CCWWGG	1 cut(s)	138
Bst2BI	CACGAG	1 cut(s)	649
Bst2UI	CCWGG	5 cut(s)	87, 107, 161, 274, 661
Bst4CI	ACNGT	3 cut(s)	175, 358, 595
BstACI	GRCGYC	1 cut(s)	201
BstBAI	YACGTR	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	149
BstDEI	CTNAG	4 cut(s)	179, 315, 336, 480
BstFNI	CGCG	1 cut(s)	342
BstHHI	GCGC	2 cut(s)	342, 606
BstKTI	GATC	4 cut(s)	24, 52, 157, 601
BstMAI	GTCTC	3 cut(s)	164, 449, 610
BstMBI	GATC	4 cut(s)	21, 49, 154, 598
BstMWI	GCNNNNNNNGC	5 cut(s)	131, 134, 346, 505, 555
BstNI	CCWGG	5 cut(s)	87, 107, 161, 274, 661
BstSCI	CCNGG	5 cut(s)	85, 105, 159, 272, 659
BstUI	CGCG	1 cut(s)	342
BstV1I	GCAGC	2 cut(s)	558, 561
BsuRI	GGCC	5 cut(s)	34, 85, 110, 194, 239
BtgZI	GCGATG	1 cut(s)	274
BtrI	CACGTC	1 cut(s)	280
BtsI	GCAGTG	2 cut(s)	61, 226
BtsIMutI	CAGTG	3 cut(s)	61, 226, 354
Cac8I	GCNNGC	1 cut(s)	149
CfoI	GCGC	2 cut(s)	342, 606
Cfr10I	RCCGGY	1 cut(s)	214
Cfr13I	GGNCC	4 cut(s)	8, 237, 250, 267
CviAII	CATG	5 cut(s)	27, 247, 416, 553, 669
DdeI	CTNAG	4 cut(s)	179, 315, 336, 480
DpnI	GATC	4 cut(s)	23, 51, 156, 600
DpnII	GATC	4 cut(s)	21, 49, 154, 598
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
EaeI	YGGCCR	1 cut(s)	32
EciI	GGCGGA	1 cut(s)	112
Ecl136II	GAGCTC	2 cut(s)	335, 558
Eco130I	CCWWGG	1 cut(s)	138
Eco147I	AGGCCT	1 cut(s)	110
Eco24I	GRGCYC	2 cut(s)	337, 560
Eco47I	GGWCC	3 cut(s)	8, 250, 267
Eco53kI	GAGCTC	2 cut(s)	335, 558
Eco72I	CACGTG	1 cut(s)	17
EcoICRI	GAGCTC	2 cut(s)	335, 558
EcoRII	CCWGG	5 cut(s)	85, 105, 159, 272, 659
EcoT14I	CCWWGG	1 cut(s)	138
EcoT38I	GRGCYC	2 cut(s)	337, 560
ErhI	CCWWGG	1 cut(s)	138
Esp3I	CGTCTC	1 cut(s)	164
FaeI	CATG	5 cut(s)	30, 250, 419, 556, 672
FaiI	YATR	7 cut(s)	28, 248, 417, 554, 630, 632, 670
FalI	AAGNNNNNCTT	4 cut(s)	131, 163, 135, 167
FatI	CATG	5 cut(s)	26, 246, 415, 552, 668
Fnu4HI	GCNGC	5 cut(s)	35, 126, 135, 547, 550
FriOI	GRGCYC	2 cut(s)	337, 560
Fsp4HI	GCNGC	5 cut(s)	35, 126, 135, 547, 550
FspBI	CTAG	1 cut(s)	587
GlaI	GCGC	2 cut(s)	341, 605
GluI	GCNGC	5 cut(s)	35, 126, 135, 547, 550
GsuI	CTGGAG	2 cut(s)	143, 473
HaeIII	GGCC	5 cut(s)	34, 85, 110, 194, 239
HapII	CCGG	2 cut(s)	215, 261
HhaI	GCGC	2 cut(s)	342, 606
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	5 cut(s)	30, 250, 419, 556, 672
Hin6I	GCGC	2 cut(s)	340, 604
HinP1I	GCGC	2 cut(s)	340, 604
HindIII	AAGCTT	1 cut(s)	438
HinfI	GANTC	2 cut(s)	395, 457
HpaII	CCGG	2 cut(s)	215, 261
Hpy166II	GTNNAC	1 cut(s)	270
Hpy188I	TCNGA	2 cut(s)	212, 481
Hpy188III	TCNNGA	6 cut(s)	47, 169, 283, 422, 452, 649
Hpy8I	GTNNAC	1 cut(s)	270
Hpy99I	CGWCG	2 cut(s)	200, 203
HpyAV	CCTTC	5 cut(s)	77, 121, 137, 258, 356
HpyCH4III	ACNGT	3 cut(s)	175, 358, 595
HpyCH4IV	ACGT	3 cut(s)	16, 201, 279
HpyCH4V	TGCA	2 cut(s)	103, 624
HpyF10VI	GCNNNNNNNGC	5 cut(s)	131, 134, 346, 505, 555
HpyF3I	CTNAG	4 cut(s)	179, 315, 336, 480
HpySE526I	ACGT	3 cut(s)	16, 201, 279
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	5 cut(s)	30, 250, 419, 556, 672
HspAI	GCGC	2 cut(s)	340, 604
Kzo9I	GATC	4 cut(s)	21, 49, 154, 598
LmnI	GCTCC	3 cut(s)	49, 332, 563
Lsp1109I	GCAGC	2 cut(s)	558, 561
MaeI	CTAG	1 cut(s)	587
MaeII	ACGT	3 cut(s)	16, 201, 279
MaeIII	GTNAC	2 cut(s)	525, 589
MalI	GATC	4 cut(s)	23, 51, 156, 600
MbiI	CCGCTC	1 cut(s)	37
MboI	GATC	4 cut(s)	21, 49, 154, 598
MboII	GAAGA	1 cut(s)	62
MhlI	GDGCHC	2 cut(s)	337, 560
MluCI	AATT	4 cut(s)	303, 492, 539, 562
MlyI	GAGTC	2 cut(s)	389, 451
MnlI	CCTC	7 cut(s)	75, 127, 130, 157, 263, 364, 368
MroXI	GAANNNNTTC	1 cut(s)	492
MspI	CCGG	2 cut(s)	215, 261
MspR9I	CCNGG	5 cut(s)	87, 107, 161, 274, 661
Mva1269I	GAATGC	2 cut(s)	436, 510
MvaI	CCWGG	5 cut(s)	87, 107, 161, 274, 661
MvnI	CGCG	1 cut(s)	342
MwoI	GCNNNNNNNGC	5 cut(s)	131, 134, 346, 505, 555
NdeII	GATC	4 cut(s)	21, 49, 154, 598
NlaIII	CATG	5 cut(s)	30, 250, 419, 556, 672
NmuCI	GTSAC	1 cut(s)	589
PceI	AGGCCT	1 cut(s)	110
PctI	GAATGC	2 cut(s)	436, 510
PdmI	GAANNNNTTC	1 cut(s)	492
PflFI	GACNNNGTC	1 cut(s)	200
PflMI	CCANNNNNTGG	1 cut(s)	567
PfoI	TCCNGGA	1 cut(s)	159
PkrI	GCNGC	5 cut(s)	36, 127, 136, 548, 551
PleI	GAGTC	2 cut(s)	389, 451
PmaCI	CACGTG	1 cut(s)	17
PmlI	CACGTG	1 cut(s)	17
PpsI	GAGTC	2 cut(s)	389, 451
Ppu21I	YACGTR	1 cut(s)	17
Psp124BI	GAGCTC	2 cut(s)	337, 560
Psp6I	CCWGG	5 cut(s)	85, 105, 159, 272, 659
PspCI	CACGTG	1 cut(s)	17
PspGI	CCWGG	5 cut(s)	85, 105, 159, 272, 659
PspPI	GGNCC	4 cut(s)	8, 237, 250, 267
PsyI	GACNNNGTC	1 cut(s)	200
SacI	GAGCTC	2 cut(s)	337, 560
SatI	GCNGC	5 cut(s)	35, 126, 135, 547, 550
Sau3AI	GATC	4 cut(s)	21, 49, 154, 598
Sau96I	GGNCC	4 cut(s)	8, 237, 250, 267
SchI	GAGTC	2 cut(s)	389, 451
ScrFI	CCNGG	5 cut(s)	87, 107, 161, 274, 661
SduI	GDGCHC	2 cut(s)	337, 560
SinI	GGWCC	3 cut(s)	8, 250, 267
Sse9I	AATT	4 cut(s)	303, 492, 539, 562
SseBI	AGGCCT	1 cut(s)	110
SsiI	CCGC	5 cut(s)	35, 123, 126, 132, 135
SspMI	CTAG	1 cut(s)	587
SstI	GAGCTC	2 cut(s)	337, 560
StuI	AGGCCT	1 cut(s)	110
StyD4I	CCNGG	5 cut(s)	85, 105, 159, 272, 659
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	3 cut(s)	175, 358, 595
TaiI	ACGT	3 cut(s)	19, 204, 282
TaqI	TCGA	2 cut(s)	73, 168
TaqII	GACCGA	1 cut(s)	650
TasI	AATT	4 cut(s)	303, 492, 539, 562
TauI	GCSGC	3 cut(s)	37, 128, 137
TscAI	CASTG	3 cut(s)	68, 233, 361
TseFI	GTSAC	1 cut(s)	589
TseI	GCWGC	2 cut(s)	546, 549
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	3 cut(s)	17, 235, 404
TspRI	CASTG	3 cut(s)	68, 233, 361
Tth111I	GACNNNGTC	1 cut(s)	200
Van91I	CCANNNNNTGG	1 cut(s)	567
VpaK11BI	GGWCC	3 cut(s)	8, 250, 267
XmnI	GAANNNNTTC	1 cut(s)	492
XspI	CTAG	1 cut(s)	587
ZraI	GACGTC	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.